The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	976940	985672	4869252	transposase,protease	Dickeya_phage(14.29%)	8	NA	NA
WP_001201751.1|976940_978059_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125877.1|978055_980002_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_000447499.1|980131_980353_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|980676_980997_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934063.1|981027_983304_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000502119.1|983495_983954_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_119920232.1|984126_984402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085983316.1|984416_985672_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
>prophage 2
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	1035765	1134574	4869252	tail,holin,terminase,integrase,tRNA,protease,lysis,portal	Salmonella_phage(44.64%)	102	1038674:1038693	1110462:1110481
WP_001154025.1|1035765_1036569_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|1036561_1037884_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|1037864_1038569_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_000572724.1|1038568_1043035_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
1038674:1038693	attL	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
WP_000925872.1|1043379_1045221_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|1045480_1046029_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|1046056_1046704_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|1046765_1047956_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_000977713.1|1048140_1049232_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
WP_000117870.1|1049838_1051239_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000762342.1|1051439_1051901_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000301921.1|1051897_1052131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000544849.1|1052217_1053432_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000893207.1|1053676_1055113_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000191399.1|1055190_1056393_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001262308.1|1056587_1057880_-|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.5	2.9e-252
WP_000065276.1|1057924_1058173_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|1058213_1058453_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001539618.1|1058495_1059653_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
WP_000017133.1|1059615_1062501_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	97.3	0.0e+00
WP_001668146.1|1062627_1062927_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
WP_000917564.1|1062948_1063107_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
WP_014344008.1|1063099_1063360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038966.1|1063409_1063820_-	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_000370145.1|1063939_1064179_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
WP_001574095.1|1064144_1064519_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000062941.1|1064603_1065587_+	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_000800013.1|1065589_1066339_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.2	1.1e-137
WP_000113629.1|1066349_1066697_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
WP_000065108.1|1066693_1067005_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
WP_014343823.1|1067082_1067373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217665.1|1067664_1067898_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
WP_000807548.1|1068009_1068231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000929805.1|1068313_1068916_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
WP_001241019.1|1068915_1069122_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
WP_001096552.1|1069124_1069736_+	hypothetical protein	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
WP_001617856.1|1069732_1069879_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047631.1|1069868_1070666_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
WP_010989004.1|1070732_1071050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001534733.1|1071223_1071349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798705.1|1071484_1071934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001141973.1|1072294_1072981_-|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
WP_001574216.1|1073256_1073586_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984586.1|1073569_1074022_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_001541990.1|1074039_1074519_+|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_000371784.1|1074726_1075260_+	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_000989241.1|1075216_1077355_+|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
WP_000196190.1|1077351_1077558_+	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_077679777.1|1077584_1079102_+|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	65.1	1.5e-175
WP_010989008.1|1079025_1081107_+|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
WP_001107908.1|1081197_1081521_+	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
WP_000774239.1|1081513_1081813_+	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_000453194.1|1081793_1082360_+|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
WP_000196702.1|1082356_1082758_+|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
WP_000132756.1|1082769_1083519_+|tail	tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
WP_000478859.1|1083564_1083963_+|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_010989009.1|1083959_1084289_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_010989010.1|1084368_1087356_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
WP_000978296.1|1087352_1087685_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
WP_000725267.1|1087783_1088281_+	outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000877926.1|1088397_1088931_-	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_001152415.1|1089020_1089716_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
WP_000606351.1|1089725_1090463_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
WP_000246065.1|1090360_1091065_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
WP_000178849.1|1094525_1094768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144679.1|1094821_1097260_+|tail	tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
WP_000143167.1|1097259_1097841_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_001526469.1|1098316_1099285_+	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	100.0	7.1e-195
WP_000334547.1|1099932_1100559_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_010989011.1|1100627_1100927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001525490.1|1100911_1101598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497441.1|1101868_1102060_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_000193784.1|1102486_1105099_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
WP_000291723.1|1105306_1106317_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|1106482_1107025_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224069.1|1107021_1108131_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001086485.1|1108229_1110338_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000053044.1|1110350_1112258_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
1110462:1110481	attR	AACGGCGCCGGGAAATCCAC	NA	NA	NA	NA
WP_000333152.1|1112272_1113526_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433414.1|1113530_1115171_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|1115167_1115731_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|1115986_1116154_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|1116253_1116772_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156453.1|1116840_1118601_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|1118786_1119239_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001674965.1|1119310_1120363_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|1120719_1121229_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|1121445_1122051_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950880.1|1122037_1124191_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|1124209_1124656_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000420505.1|1124779_1126834_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_000424187.1|1126869_1127328_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|1127422_1128085_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000975203.1|1128255_1128672_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|1128716_1129034_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|1129091_1130303_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859419.1|1130517_1131066_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000548082.1|1131091_1131871_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000072884.1|1131919_1132201_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|1132197_1132527_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374050.1|1132613_1133273_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
WP_000938191.1|1133893_1134574_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
>prophage 3
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	1273021	1330129	4869252	transposase,tail,terminase,integrase,tRNA,head,portal,lysis,capsid	Enterobacteria_phage(32.69%)	73	1283749:1283763	1298147:1298161
WP_000502119.1|1273021_1273480_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_001113672.1|1273570_1274860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000456516.1|1274899_1276021_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_001031687.1|1276101_1277565_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
WP_000986522.1|1277564_1278239_-	two-component system response regulator PhoP	NA	NA	NA	NA	NA
WP_000423763.1|1278362_1279733_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	8.5e-109
WP_001519653.1|1279736_1280378_-	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_000004541.1|1280464_1281571_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000476067.1|1281624_1282086_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000825957.1|1282097_1282427_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_001249412.1|1282423_1283089_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000444507.1|1283260_1284511_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	1.1e-19
1283749:1283763	attL	TGAATGGAAAGCTGA	NA	NA	NA	NA
WP_000741325.1|1284623_1285766_-|integrase	tyrosine-type recombinase/integrase	integrase	O21929	Phage_21	80.3	8.2e-174
WP_000089141.1|1285755_1285992_-	excisionase	NA	NA	NA	NA	NA
WP_000069465.1|1286041_1286593_-	hypothetical protein	NA	A0A192Y7X3	Salmonella_phage	34.5	2.8e-10
WP_000066251.1|1286589_1286922_-	hypothetical protein	NA	S4TNP2	Salmonella_phage	81.8	8.8e-20
WP_001033922.1|1286914_1287235_-	hypothetical protein	NA	A0A222YY67	Escherichia_phage	59.2	1.8e-33
WP_001126029.1|1287270_1288101_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.3e-104
WP_022664343.1|1288093_1290805_-	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	39.6	1.2e-125
WP_000373340.1|1291515_1291722_+	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	67.6	7.4e-17
WP_000368620.1|1291829_1292915_-	ParA family protein	NA	H2BD62	Pseudomonas_phage	38.0	1.5e-60
WP_000169863.1|1293066_1293534_-	helix-turn-helix domain-containing protein	NA	K7PHG0	Enterobacteria_phage	86.9	3.2e-68
WP_000145711.1|1293547_1293775_+	Rha family transcriptional regulator	NA	K7PKS2	Enterobacteria_phage	95.9	1.5e-34
WP_072143007.1|1293740_1294115_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	97.6	2.8e-62
WP_000024048.1|1294206_1295112_+	replication protein	NA	A0A0M5M7Y1	Salmonella_phage	96.3	4.4e-170
WP_000788827.1|1295108_1295801_+	Replication protein 14	NA	G8C7U6	Escherichia_phage	60.2	1.8e-78
WP_000065092.1|1295815_1296481_+	ead/Ea22-like family protein	NA	A0A1V0E5L5	Salmonella_phage	44.9	2.8e-25
WP_000852188.1|1296482_1296953_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.1e-68
WP_000208067.1|1296955_1297609_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	52.0	6.3e-62
WP_000002116.1|1297601_1297883_+	ASCH domain-containing protein	NA	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	95.7	3.2e-47
WP_014344025.1|1297994_1298186_+	hypothetical protein	NA	G8C7S2	Escherichia_phage	68.9	1.1e-17
1298147:1298161	attR	TGAATGGAAAGCTGA	NA	NA	NA	NA
WP_001217669.1|1298444_1298678_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_014343878.1|1298794_1299043_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_000929785.1|1299077_1299677_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	81.0	1.7e-93
WP_000784702.1|1299673_1299868_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	61.5	1.4e-12
WP_000926953.1|1299849_1300146_+	DUF1364 family protein	NA	K7P7Q1	Enterobacteria_phage	79.1	3.9e-35
WP_000639984.1|1300142_1300697_+	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	65.3	3.4e-64
WP_014344026.1|1300693_1300882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000211401.1|1300963_1301524_+	ORF6N domain-containing protein	NA	A0A2R2Z302	Escherichia_phage	71.1	1.1e-41
WP_024132423.1|1301443_1301632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000658040.1|1301766_1301955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000690097.1|1302108_1302327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001533418.1|1302338_1302806_-	DUF2441 domain-containing protein	NA	NA	NA	NA	NA
WP_001533331.1|1303055_1303358_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001208107.1|1303335_1303875_+	lysozyme	NA	S5MQK2	Escherichia_phage	74.1	5.7e-77
WP_086015771.1|1304192_1304648_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	78.8	8.0e-56
WP_000669689.1|1304874_1305276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001102153.1|1305561_1306107_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000623088.1|1306078_1308010_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.9	1.3e-259
WP_000201415.1|1307993_1308197_+|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_000831821.1|1308193_1309774_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_001189503.1|1309763_1311260_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
WP_000011260.1|1311272_1311620_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_000522566.1|1311674_1312703_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000201486.1|1312760_1313120_+	DNA packaging protein	NA	NA	NA	NA	NA
WP_000083294.1|1313130_1313514_+|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
WP_000677089.1|1313541_1314120_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000817263.1|1314168_1315299_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
WP_000033885.1|1315407_1315809_+|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000971954.1|1315816_1316563_+|tail	tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000479607.1|1316613_1317009_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_010989052.1|1317005_1317344_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000372072.1|1317315_1320411_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
WP_000447369.1|1320413_1320743_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_001152689.1|1320752_1321451_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_000662739.1|1321457_1322195_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
WP_000246126.1|1322092_1322740_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000514918.1|1322801_1326164_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.9	0.0e+00
WP_000178849.1|1326202_1326445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038407301.1|1326498_1328940_+|tail	tail protein	tail	A0A0K2FIZ6	Escherichia_phage	62.0	2.5e-87
WP_000143179.1|1328939_1329524_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	84.8	1.7e-87
WP_014344029.1|1329621_1329822_-	PagJ	NA	NA	NA	NA	NA
WP_071531834.1|1330012_1330129_-|tail	phage tail protein	tail	NA	NA	NA	NA
>prophage 4
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	1974875	1981684	4869252	tail,integrase	Salmonella_phage(33.33%)	11	1969738:1969760	1979453:1979475
1969738:1969760	attL	AAAAAGAGACCGAATACGATTCC	NA	NA	NA	NA
WP_000275418.1|1974875_1975757_-|tail	tail assembly protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
WP_001521334.1|1976229_1976418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789530.1|1976482_1976650_+	lytic enzyme	NA	NA	NA	NA	NA
WP_001050882.1|1976906_1977440_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
WP_001013467.1|1977493_1977724_-	hypothetical protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
WP_010989030.1|1977913_1978408_+	hypothetical protein	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
WP_001520095.1|1978467_1979322_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
WP_000722368.1|1979695_1980049_-	YebY family protein	NA	NA	NA	NA	NA
1979453:1979475	attR	AAAAAGAGACCGAATACGATTCC	NA	NA	NA	NA
WP_000979702.1|1980065_1980941_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000168393.1|1980941_1981316_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856224.1|1981453_1981684_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
>prophage 5
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	2057134	2136478	4869252	transposase,tail,holin,terminase,integrase,plate,head,protease,portal,lysis,capsid	Salmonella_phage(85.07%)	105	2063672:2063687	2138101:2138116
WP_000502119.1|2057134_2057593_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_000659236.1|2057773_2058979_-	lysine-N-methylase	NA	NA	NA	NA	NA
WP_000079805.1|2059057_2060545_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_000146802.1|2060801_2062205_+	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_000287764.1|2062219_2062627_+	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_000204899.1|2062626_2062995_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA	NA
WP_000795487.1|2063066_2064551_+	alpha-amylase	NA	NA	NA	NA	NA
2063672:2063687	attL	TGAAAATATCGATTTT	NA	NA	NA	NA
WP_000754695.1|2064590_2065016_-	lipoprotein	NA	NA	NA	NA	NA
WP_001535233.1|2065201_2066407_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA	NA
WP_000790504.1|2066403_2066637_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA	NA
WP_000639596.1|2066901_2067288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719036.1|2067407_2067722_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_001276834.1|2067938_2069621_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_000067735.1|2069613_2070609_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_000064163.1|2070601_2071309_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_000213257.1|2071308_2072679_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA	NA
WP_000046981.1|2072700_2073144_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA	NA
WP_000631669.1|2073140_2074358_+	flagellar hook length control protein FliK	NA	NA	NA	NA	NA
WP_000132169.1|2074462_2074930_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_000502811.1|2074934_2075939_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_001282115.1|2075935_2076349_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_000978276.1|2076348_2076726_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA	NA
WP_001253410.1|2076725_2077463_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_000187355.1|2077472_2077742_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_000616953.1|2077750_2078545_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
WP_000103974.1|2078826_2079450_+	transcriptional regulator RcsA	NA	NA	NA	NA	NA
WP_071524019.1|2079488_2079737_-	protein DsrB	NA	NA	NA	NA	NA
WP_000844798.1|2079811_2080039_+	YodD family peroxide/acid resistance protein	NA	NA	NA	NA	NA
WP_000948794.1|2080348_2081164_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA	NA
WP_001119821.1|2081142_2082855_-	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	37.4	1.2e-19
WP_001178599.1|2083019_2083265_-	YodC family protein	NA	NA	NA	NA	NA
WP_000929134.1|2083281_2084193_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_001212264.1|2084368_2085289_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_000785978.1|2085277_2085748_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
WP_001157322.1|2085728_2087159_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377041.1|2087232_2087928_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107430.1|2088019_2088319_-	membrane protein	NA	NA	NA	NA	NA
WP_001080680.1|2088968_2090165_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
WP_024131109.1|2090425_2090614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2090624_2090837_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457662.1|2091291_2092560_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
WP_000394196.1|2092562_2092982_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000500831.1|2093108_2093270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099112411.1|2093571_2093787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001526483.1|2093900_2094122_-	helix-turn-helix domain-containing protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
WP_000492926.1|2094334_2095342_+	type III secretion system effector arginine glycosyltransferase	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
WP_000760554.1|2095626_2096196_-|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	7.3e-107
WP_000554737.1|2096195_2097758_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	100.0	2.6e-287
WP_001207832.1|2097744_2098332_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
WP_014343855.1|2098334_2098856_-|plate	baseplate J/gp47 family protein	plate	Q8HAB6	Salmonella_phage	100.0	2.9e-94
WP_014343856.1|2098890_2099436_-	phage protein	NA	Q8HAB7	Salmonella_phage	100.0	9.2e-99
WP_000605050.1|2099407_2099821_-	hypothetical protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
WP_001273649.1|2099825_2100359_-|plate	phage baseplate assembly protein	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
WP_001066636.1|2100358_2101417_-	hypothetical protein	NA	Q8HAC0	Salmonella_phage	100.0	1.3e-202
WP_000863818.1|2101413_2102754_-	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.6	5.7e-251
WP_000785385.1|2102787_2104716_-|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.8	0.0e+00
WP_000588852.1|2104800_2105127_-|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
WP_000515952.1|2105123_2105480_-|tail	tail protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_001007991.1|2105479_2106976_-|tail	tail sheath protein	tail	Q8HAC5	Salmonella_phage	100.0	2.7e-278
WP_000497739.1|2106965_2107130_-	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
WP_000779218.1|2107133_2107694_-	hypothetical protein	NA	Q8HAC7	Salmonella_phage	100.0	3.0e-105
WP_001135697.1|2107690_2108203_-	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
WP_000702408.1|2108174_2108579_-|head	phage head closure protein	head	Q8HAC9	Salmonella_phage	100.0	1.4e-72
WP_000927378.1|2108575_2108899_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
WP_000601353.1|2108901_2109102_-	hypothetical protein	NA	Q8HAD1	Salmonella_phage	100.0	1.4e-28
WP_000257528.1|2109152_2110358_-|capsid	phage major capsid protein	capsid	Q8HAD2	Salmonella_phage	100.0	1.6e-223
WP_001193639.1|2110372_2111023_-|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	1.5e-119
WP_000466254.1|2111000_2112242_-|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.8	2.0e-242
WP_000605609.1|2112241_2112424_-	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
WP_000088182.1|2112435_2114169_-|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	100.0	0.0e+00
WP_000929191.1|2114165_2114660_-|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	4.6e-89
WP_001135225.1|2114785_2115136_-	HNH endonuclease	NA	Q8HA82	Salmonella_phage	100.0	2.5e-65
WP_001292890.1|2115196_2115499_-	hypothetical protein	NA	Q8HA83	Salmonella_phage	100.0	3.6e-52
WP_000877027.1|2115718_2116138_-	KilA-N domain-containing protein	NA	Q8HA84	Salmonella_phage	100.0	4.8e-71
WP_001050825.1|2116350_2116836_-|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	100.0	5.9e-81
WP_001005901.1|2116832_2117447_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	100.0	9.3e-116
WP_001527046.1|2117449_2117794_-|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	100.0	5.3e-44
WP_014343859.1|2117955_2118390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527054.1|2118319_2118577_-	hypothetical protein	NA	Q8HA88	Salmonella_phage	100.0	5.2e-44
WP_000188927.1|2118709_2119333_-	hypothetical protein	NA	Q8HA89	Salmonella_phage	100.0	9.1e-119
WP_001202278.1|2119343_2120333_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.6	9.2e-190
WP_001061457.1|2120340_2121201_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	100.0	2.9e-163
WP_001241579.1|2121217_2121607_-	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	100.0	3.7e-70
WP_000066908.1|2121603_2122497_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
WP_001684745.1|2122496_2122979_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	1.1e-87
WP_000061500.1|2122980_2123799_-	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
WP_000620702.1|2123795_2124020_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_001087402.1|2124016_2125174_-	peptidase	NA	Q8HA97	Salmonella_phage	100.0	4.2e-218
WP_000509731.1|2125170_2125725_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
WP_001191666.1|2125753_2125978_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_071529734.1|2125916_2126102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001020636.1|2126075_2126771_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
WP_000997190.1|2127585_2127957_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_000080415.1|2128014_2128842_+	YfdQ family protein	NA	Q8HAA2	Salmonella_phage	100.0	7.5e-153
WP_000008351.1|2128978_2129518_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000764235.1|2129588_2129819_+	hypothetical protein	NA	Q8HAA4	Salmonella_phage	100.0	2.0e-34
WP_000071070.1|2129815_2130331_+	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	100.0	7.4e-98
WP_000065095.1|2130327_2130945_+	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	100.0	2.6e-113
WP_000208068.1|2130941_2131775_+	hypothetical protein	NA	Q8HAA7	Salmonella_phage	100.0	4.7e-163
WP_001061334.1|2131778_2132348_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
WP_000414876.1|2132372_2132615_+	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	9.5e-40
WP_000532847.1|2132616_2133606_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
WP_000598920.1|2133897_2134695_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001738920.1|2135066_2135357_+	DUF4102 domain-containing protein	NA	H2BDA3	Pseudomonas_phage	49.1	3.0e-08
WP_001219015.1|2136004_2136478_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
2138101:2138116	attR	TGAAAATATCGATTTT	NA	NA	NA	NA
>prophage 6
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	2222472	2232978	4869252		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2222472_2223786_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565905.1|2223812_2224892_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
WP_000648784.1|2224896_2225670_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018226.1|2225666_2226659_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973708.1|2226664_2227216_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
WP_000857529.1|2227216_2228095_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
WP_001023662.1|2228142_2229042_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_000697840.1|2229041_2230127_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
WP_000981469.1|2230503_2231397_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111841.1|2231574_2232978_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
>prophage 7
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	2301286	2310457	4869252	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195332.1|2301286_2303320_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|2303560_2304019_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197952.1|2304190_2304721_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2304777_2305245_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2305291_2306011_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272845.1|2306007_2307693_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_001240418.1|2307915_2308647_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2308706_2308814_+	protein YohO	NA	NA	NA	NA	NA
WP_000824855.1|2308794_2309526_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2309509_2310457_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 8
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	2382508	2412101	4869252	holin,tail,protease	Salmonella_phage(38.46%)	33	NA	NA
WP_000806401.1|2382508_2383012_-	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
WP_000884778.1|2383039_2383330_+	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
WP_000639473.1|2383677_2385507_+	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
WP_000022213.1|2385560_2386004_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
WP_125572651.1|2386005_2386329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001215679.1|2386381_2386909_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
WP_000554739.1|2386911_2388153_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
WP_001120499.1|2388745_2389075_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
WP_000894640.1|2389371_2390703_+	AAA family ATPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
WP_010989045.1|2390731_2391100_-	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
WP_014344510.1|2391114_2392104_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	2.4e-190
WP_001115840.1|2392432_2394799_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
WP_001113462.1|2394967_2395171_-|tail	tail protein	tail	NA	NA	NA	NA
WP_000624225.1|2395467_2396259_-|tail	tail protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
WP_001653202.1|2396561_2396765_+	virulence protein MsgA	NA	NA	NA	NA	NA
WP_000281877.1|2396956_2397520_-	acyloxyacyl hydrolase	NA	NA	NA	NA	NA
WP_001115498.1|2398249_2398897_+	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA	NA
WP_149096560.1|2398940_2399984_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000828296.1|2399980_2400538_-	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA	NA
WP_000982518.1|2400534_2402466_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA	NA
WP_001053618.1|2402462_2402942_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA	NA
WP_000074110.1|2402938_2403151_-	heme exporter protein CcmD	NA	NA	NA	NA	NA
WP_000266008.1|2403147_2403885_-	heme ABC transporter permease	NA	NA	NA	NA	NA
WP_000990028.1|2403936_2404596_-	heme exporter protein CcmB	NA	NA	NA	NA	NA
WP_000888541.1|2404592_2405210_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A2H4PQG7	Staphylococcus_phage	27.2	2.2e-11
WP_000431778.1|2405230_2405833_-	cytochrome c-type protein NapC	NA	NA	NA	NA	NA
WP_000835182.1|2405842_2406292_-	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA	NA
WP_000013529.1|2406407_2407277_-	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA	NA
WP_000091673.1|2407263_2407959_-	ferredoxin-type protein NapG	NA	NA	NA	NA	NA
WP_000778094.1|2407965_2410452_-	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA	NA
WP_001260058.1|2410448_2410712_-	chaperone NapD	NA	NA	NA	NA	NA
WP_000228070.1|2410701_2411193_-	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
WP_000781589.1|2411606_2412101_+|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
>prophage 9
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	2735132	2836596	4869252	tail,transposase,holin,terminase,integrase,tRNA,head,portal,lysis,protease,capsid	Salmonella_phage(36.07%)	110	2761276:2761291	2831685:2831700
WP_000940032.1|2735132_2735864_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_000553467.1|2735982_2736786_+	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_000174944.1|2736930_2737809_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	3.5e-15
WP_000985204.1|2737990_2739034_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA	NA
WP_000017587.1|2739037_2739856_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA	NA
WP_000020685.1|2739866_2740880_+	sulfite reductase subunit C	NA	NA	NA	NA	NA
WP_000111027.1|2740880_2741867_-	nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000805728.1|2741857_2742496_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_000982961.1|2742621_2743899_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
WP_001173729.1|2743893_2745033_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_000919178.1|2745228_2746482_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
WP_000883146.1|2746806_2747997_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_001187150.1|2748178_2749723_+	CadC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000100008.1|2750083_2751415_+	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
WP_001100652.1|2751497_2753642_+	lysine decarboxylase CadA	NA	NA	NA	NA	NA
WP_000856793.1|2753697_2755158_+	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	28.8	1.7e-46
WP_000717694.1|2755206_2755545_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_000625591.1|2755621_2756959_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
WP_001054236.1|2756955_2757720_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
WP_001670672.1|2757721_2759152_-	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	2.0e-15
WP_000970045.1|2759801_2763689_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	1.4e-127
2761276:2761291	attL	AACGCGGAAATCACCA	NA	NA	NA	NA
WP_001747289.1|2763710_2763944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000734258.1|2763944_2765489_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA	NA
WP_001134566.1|2765539_2766091_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
WP_000253558.1|2766115_2766751_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_000361663.1|2766754_2768116_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001048530.1|2768126_2769020_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_000995703.1|2769135_2769984_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000684022.1|2770022_2770940_-	oxidoreductase	NA	NA	NA	NA	NA
WP_001276370.1|2770961_2772158_-	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_001022463.1|2772273_2773200_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
WP_001196290.1|2773237_2773498_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_000986043.1|2773609_2773990_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_000818972.1|2773989_2774721_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000399380.1|2774732_2775461_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000102232.1|2775472_2776378_-	GTPase Era	NA	NA	NA	NA	NA
WP_001068341.1|2776374_2777055_-	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000002559.1|2777328_2778303_-	signal peptidase I	NA	NA	NA	NA	NA
WP_000790154.1|2778319_2780119_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_010989047.1|2780523_2782017_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
WP_001542312.1|2782495_2782633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015589559.1|2783345_2783510_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_015701342.1|2784089_2784155_-	DUF4113 domain-containing protein	NA	NA	NA	NA	NA
WP_001738443.1|2784217_2784430_-	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
WP_010989049.1|2784536_2784764_+	PagK-like protein	NA	NA	NA	NA	NA
WP_000143154.1|2784860_2785439_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
WP_000593433.1|2785428_2786253_-|tail	tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
WP_001144691.1|2786249_2788622_-|tail	tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
WP_000178853.1|2788675_2788918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000514917.1|2788956_2792319_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
WP_000246126.1|2792380_2793028_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000662739.1|2792925_2793663_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
WP_001152689.1|2793669_2794368_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_000447369.1|2794377_2794707_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_000372072.1|2794709_2797805_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
WP_010989052.1|2797776_2798115_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000479607.1|2798111_2798507_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_000971954.1|2798557_2799304_-|tail	tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000033885.1|2799311_2799713_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000817263.1|2799821_2800952_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
WP_000677089.1|2801000_2801579_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000083294.1|2801606_2801990_-|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
WP_000201486.1|2802000_2802360_-	DNA packaging protein	NA	NA	NA	NA	NA
WP_000522566.1|2802417_2803446_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000011260.1|2803500_2803848_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_001189503.1|2803860_2805357_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
WP_000831821.1|2805346_2806927_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_000201415.1|2806923_2807127_-|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_000623091.1|2807110_2809042_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
WP_001102153.1|2809013_2809559_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000669690.1|2809845_2810247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001533543.1|2810482_2810935_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_000984581.1|2810952_2811405_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
WP_001574216.1|2811388_2811718_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001110783.1|2811993_2812680_+|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
WP_000657897.1|2812894_2813083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000211410.1|2813589_2814153_-	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
WP_072095218.1|2814243_2814429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001097241.1|2814425_2815103_-	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
WP_000801757.1|2815099_2815240_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_001096550.1|2815236_2815848_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
WP_001241017.1|2815850_2816057_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
WP_000929791.1|2816056_2816659_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
WP_014343878.1|2816693_2816942_-	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_001217669.1|2817058_2817292_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_000877757.1|2817534_2818167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664368.1|2818274_2818973_-	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
WP_000801764.1|2818986_2819682_-	hypothetical protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
WP_000024044.1|2819678_2820563_-	replication protein	NA	K7PGT1	Enterobacteria_phage	47.2	1.3e-46
WP_010835408.1|2820654_2821029_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
WP_000643689.1|2820988_2821231_-	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
WP_000660736.1|2821330_2821726_+	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
WP_001111772.1|2821784_2822624_+	AAA family ATPase	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
WP_000356948.1|2822616_2823003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000950426.1|2823002_2823665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000917562.1|2824121_2824280_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
WP_001539619.1|2824301_2824652_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
WP_000017125.1|2824778_2827706_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
WP_077248255.1|2827668_2828826_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
WP_001237031.1|2828868_2829108_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001670787.1|2829148_2829433_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
WP_001007939.1|2829410_2830640_-|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.4	2.9e-233
WP_000589087.1|2831137_2831617_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_000812017.1|2831613_2832570_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
2831685:2831700	attR	TGGTGATTTCCGCGTT	NA	NA	NA	NA
WP_001168374.1|2832569_2833220_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000003307.1|2833251_2833827_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_014344135.1|2833823_2833988_-	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_001521719.1|2833987_2834167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000989177.1|2834251_2835874_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_000083343.1|2835858_2836596_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
>prophage 10
NZ_CP043402	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S substr. GXS254 chromosome, complete genome	4869252	4430443	4450863	4869252	plate,tail	Burkholderia_phage(45.0%)	26	NA	NA
WP_000587738.1|4430443_4431172_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
WP_010989092.1|4431368_4431659_-	membrane protein	NA	NA	NA	NA	NA
WP_000084331.1|4431907_4432363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001526208.1|4432359_4432965_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000368196.1|4432969_4434715_-|tail	tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
WP_000359500.1|4434717_4435350_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
WP_000951736.1|4435342_4436458_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
WP_001093501.1|4436448_4436808_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001095011.1|4436971_4438519_-	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_000703632.1|4438518_4439448_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
WP_000593182.1|4439444_4439807_-	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000679398.1|4440134_4440857_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
WP_000818154.1|4440866_4441910_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
WP_001269716.1|4441897_4442107_-	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000271423.1|4442106_4443060_-	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_001262500.1|4443059_4445414_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	6.9e-66
WP_001185654.1|4445510_4445639_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003642.1|4445598_4445916_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4445967_4446492_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729852.1|4446491_4447919_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000875314.1|4447908_4448106_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449433.1|4448102_4448558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777266.1|4448717_4449032_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270440.1|4449044_4449650_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.4	1.2e-59
WP_001226442.1|4449652_4449940_-	membrane protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
WP_000615248.1|4450515_4450863_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
