assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	1	230360-230445	1	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,DinG,WYL,cas3,cas9	Unclear	TAAGCGGCTTAACAAGTTTGAAA	23	1	1	230383-230422	NZ_CP042816.1_234053-234092	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|71aa|up_4|NZ_CP042816.1_226058_226271_-,NA|128aa|up_3|NZ_CP042816.1_226735_227119_+,NA|129aa|up_2|NZ_CP042816.1_227251_227638_+,NA|268aa|down_2|NZ_CP042816.1_232671_233475_+,NA|109aa|down_6|NZ_CP042816.1_236815_237142_+,NA|80aa|down_7|NZ_CP042816.1_237687_237927_+,NA|99aa|down_9|NZ_CP042816.1_238891_239188_+	NA|206aa|up_9|NZ_CP042816.1_220133_220751_-	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|388aa|up_8|NZ_CP042816.1_221467_222631_+	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|687aa|up_7|NZ_CP042816.1_222705_224766_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|168aa|up_6|NZ_CP042816.1_224719_225223_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|281aa|up_5|NZ_CP042816.1_225219_226062_+	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase	NA|71aa|up_4|NZ_CP042816.1_226058_226271_-	NA	NA|128aa|up_3|NZ_CP042816.1_226735_227119_+	NA	NA|129aa|up_2|NZ_CP042816.1_227251_227638_+	NA	NA|339aa|up_1|NZ_CP042816.1_227822_228839_+	COG5377, COG5377, Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair]	NA|427aa|up_0|NZ_CP042816.1_228854_230135_+	cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50	DEDDh|191aa|down_0|NZ_CP042816.1_231072_231645_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|321aa|down_1|NZ_CP042816.1_231693_232656_+	PRK09846, recT, recombination protein RecT	NA|268aa|down_2|NZ_CP042816.1_232671_233475_+	NA	NA|350aa|down_3|NZ_CP042816.1_234665_235715_+	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|260aa|down_4|NZ_CP042816.1_235728_236508_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|100aa|down_5|NZ_CP042816.1_236512_236812_+	pfam14359, DUF4406, Domain of unknown function (DUF4406)	NA|109aa|down_6|NZ_CP042816.1_236815_237142_+	NA	NA|80aa|down_7|NZ_CP042816.1_237687_237927_+	NA	NA|320aa|down_8|NZ_CP042816.1_237926_238886_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|99aa|down_9|NZ_CP042816.1_238891_239188_+	NA
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	2	376506-376619	2	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	GTGGTTCCAAACAGAAACGATGTTTTAAA	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|80aa|up_9|NZ_CP042816.1_358670_358910_+,NA|552aa|up_4|NZ_CP042816.1_366096_367752_+,NA|86aa|up_3|NZ_CP042816.1_367787_368045_-,NA|60aa|down_1|NZ_CP042816.1_378231_378411_+,NA|241aa|down_7|NZ_CP042816.1_388848_389571_+,NA|168aa|down_9|NZ_CP042816.1_391101_391605_+	NA|80aa|up_9|NZ_CP042816.1_358670_358910_+	NA	NA|223aa|up_8|NZ_CP042816.1_359440_360109_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|614aa|up_7|NZ_CP042816.1_360268_362110_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|186aa|up_6|NZ_CP042816.1_362166_362724_+	COG3945, COG3945, Uncharacterized conserved protein [Function unknown]	NA|756aa|up_5|NZ_CP042816.1_363659_365927_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|552aa|up_4|NZ_CP042816.1_366096_367752_+	NA	NA|86aa|up_3|NZ_CP042816.1_367787_368045_-	NA	NA|943aa|up_2|NZ_CP042816.1_368335_371164_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|423aa|up_1|NZ_CP042816.1_372038_373307_+	PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|818aa|up_0|NZ_CP042816.1_373762_376216_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|413aa|down_0|NZ_CP042816.1_376778_378017_-	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|60aa|down_1|NZ_CP042816.1_378231_378411_+	NA	NA|421aa|down_2|NZ_CP042816.1_378725_379988_+	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase	NA|251aa|down_3|NZ_CP042816.1_380068_380821_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|612aa|down_4|NZ_CP042816.1_380879_382715_+	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|392aa|down_5|NZ_CP042816.1_383520_384696_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|611aa|down_6|NZ_CP042816.1_385046_386879_+	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|241aa|down_7|NZ_CP042816.1_388848_389571_+	NA	NA|396aa|down_8|NZ_CP042816.1_389588_390776_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|168aa|down_9|NZ_CP042816.1_391101_391605_+	NA
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3	770905-771054	3	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	CTGCGTGGAACCACCGCACGGTATAATTTTGCCGTCCATGGCAAAA	46	1	1	770951-771008	NZ_CP042816.1_905568-905625	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|679aa|up_8|NZ_CP042816.1_757064_759101_+,NA|171aa|up_4|NZ_CP042816.1_763724_764237_+,NA|3353aa|down_0|NZ_CP042816.1_771321_781380_-,NA|89aa|down_6|NZ_CP042816.1_789122_789389_-,NA|201aa|down_9|NZ_CP042816.1_791406_792009_-	NA|453aa|up_9|NZ_CP042816.1_755639_756998_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|679aa|up_8|NZ_CP042816.1_757064_759101_+	NA	NA|569aa|up_7|NZ_CP042816.1_759087_760794_+	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|602aa|up_6|NZ_CP042816.1_760807_762613_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|242aa|up_5|NZ_CP042816.1_762990_763716_+	pfam13551, HTH_29, Winged helix-turn helix	NA|171aa|up_4|NZ_CP042816.1_763724_764237_+	NA	NA|335aa|up_3|NZ_CP042816.1_766100_767105_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|348aa|up_2|NZ_CP042816.1_767101_768145_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|251aa|up_1|NZ_CP042816.1_768141_768894_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|413aa|up_0|NZ_CP042816.1_769460_770699_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|3353aa|down_0|NZ_CP042816.1_771321_781380_-	NA	NA|183aa|down_1|NZ_CP042816.1_782060_782609_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|248aa|down_2|NZ_CP042816.1_782786_783530_-	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|493aa|down_3|NZ_CP042816.1_783592_785071_-	pfam07364, DUF1485, Metallopeptidase family M81	NA|592aa|down_4|NZ_CP042816.1_785603_787379_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|555aa|down_5|NZ_CP042816.1_787365_789030_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|89aa|down_6|NZ_CP042816.1_789122_789389_-	NA	NA|254aa|down_7|NZ_CP042816.1_789749_790511_-	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system	NA|263aa|down_8|NZ_CP042816.1_790621_791410_-	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]	NA|201aa|down_9|NZ_CP042816.1_791406_792009_-	NA
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	4	889548-889695	4	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	GAACCACGGGCATCCGTGCCCGTTACCATCGGAATGCTGAAGCCGTTA	48	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA,NA	NA|514aa|up_9|NZ_CP042816.1_874753_876295_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|298aa|up_8|NZ_CP042816.1_876403_877297_+	TIGR02024, FtcD, glutamate formiminotransferase	NA|559aa|up_7|NZ_CP042816.1_877298_878975_+	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|449aa|up_6|NZ_CP042816.1_879999_881346_+	pfam13941, MutL, MutL protein	NA|470aa|up_5|NZ_CP042816.1_881542_882952_+	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|222aa|up_4|NZ_CP042816.1_883080_883746_+	pfam08348, PAS_6, YheO-like PAS domain	NA|398aa|up_3|NZ_CP042816.1_883775_884969_+	TIGR03316, aspartate/ornithine_carbamoyltransferase, knotted carbamoyltransferase YgeW	NA|441aa|up_2|NZ_CP042816.1_884987_886310_+	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase	NA|401aa|up_1|NZ_CP042816.1_886417_887620_+	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional	NA|561aa|up_0|NZ_CP042816.1_887641_889324_+	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional	NA|441aa|down_0|NZ_CP042816.1_890073_891396_+	PRK07203, PRK07203, putative aminohydrolase SsnA	NA|459aa|down_1|NZ_CP042816.1_891962_893339_+	TIGR03173, pbuX, xanthine permease	NA|850aa|down_2|NZ_CP042816.1_893424_895974_+	TIGR03311, Se_dep_XDH, selenium-dependent xanthine dehydrogenase	NA|315aa|down_3|NZ_CP042816.1_896301_897246_+	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|324aa|down_4|NZ_CP042816.1_897276_898248_+	cd03522, MoeA_like, MoeA_like	NA|159aa|down_5|NZ_CP042816.1_898244_898721_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|323aa|down_6|NZ_CP042816.1_898701_899670_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|147aa|down_7|NZ_CP042816.1_899670_900111_+	PRK14499, PRK14499, cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein	NA|168aa|down_8|NZ_CP042816.1_900089_900593_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|112aa|down_9|NZ_CP042816.1_900589_900925_+	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only]
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	5	1402563-1402656	5	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	TCCGTGCCCGTTCTGAGTTTTGCCGTCC	28	1	2	1402591-1402628|1402591-1402628	NZ_CP042816.1_1242151-1242188|NZ_CP042816.1_2181879-2181842	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|88aa|up_4|NZ_CP042816.1_1396799_1397063_-,NA|375aa|down_6|NZ_CP042816.1_1410464_1411589_-	NA|412aa|up_9|NZ_CP042816.1_1390140_1391376_+	cd14728, Ere-like, Erythromycin esterase and succinoglycan biosynthesis related proteins	NA|429aa|up_8|NZ_CP042816.1_1391646_1392933_+	cd01116, P_permease, Permease P (pink-eyed dilution)	NA|395aa|up_7|NZ_CP042816.1_1392995_1394180_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|217aa|up_6|NZ_CP042816.1_1394731_1395382_+	pfam01832, Glucosaminidase, Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA|272aa|up_5|NZ_CP042816.1_1395833_1396649_-	COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion]	NA|88aa|up_4|NZ_CP042816.1_1396799_1397063_-	NA	NA|256aa|up_3|NZ_CP042816.1_1397216_1397984_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|629aa|up_2|NZ_CP042816.1_1398232_1400119_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|270aa|up_1|NZ_CP042816.1_1400115_1400925_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|478aa|up_0|NZ_CP042816.1_1400917_1402351_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|418aa|down_0|NZ_CP042816.1_1403134_1404388_+	pfam13551, HTH_29, Winged helix-turn helix	NA|563aa|down_1|NZ_CP042816.1_1404518_1406207_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|277aa|down_2|NZ_CP042816.1_1406565_1407396_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|164aa|down_3|NZ_CP042816.1_1407358_1407850_+	cd01948, EAL, EAL domain	NA|268aa|down_4|NZ_CP042816.1_1408620_1409424_-	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|234aa|down_5|NZ_CP042816.1_1409451_1410153_-	cd02869, PseudoU_synth_RluA_like, Pseudouridine synthase, RluA family	NA|375aa|down_6|NZ_CP042816.1_1410464_1411589_-	NA	NA|376aa|down_7|NZ_CP042816.1_1411585_1412713_-	pfam04551, GcpE, GcpE protein	NA|160aa|down_8|NZ_CP042816.1_1412775_1413255_-	pfam05130, FlgN, FlgN protein	NA|147aa|down_9|NZ_CP042816.1_1413257_1413698_-	pfam02561, FliS, Flagellar protein FliS
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	6	1588273-1588435	6	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	TTTTGACATGGACGTCAAAAACTCAGAACCGCCACGGACGGCGGTGGTTCCA	52	1	1	1588325-1588383	NZ_CP042816.1_226181-226123	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|435aa|up_9|NZ_CP042816.1_1573081_1574386_-,NA|393aa|up_5|NZ_CP042816.1_1577286_1578465_-,NA|65aa|down_4|NZ_CP042816.1_1597013_1597208_-,NA|151aa|down_8|NZ_CP042816.1_1601870_1602323_-,NA|60aa|down_9|NZ_CP042816.1_1602709_1602889_+	NA|435aa|up_9|NZ_CP042816.1_1573081_1574386_-	NA	NA|285aa|up_8|NZ_CP042816.1_1574378_1575233_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|71aa|up_7|NZ_CP042816.1_1575246_1575459_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|260aa|up_6|NZ_CP042816.1_1575623_1576403_-	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|393aa|up_5|NZ_CP042816.1_1577286_1578465_-	NA	NA|690aa|up_4|NZ_CP042816.1_1578909_1580979_-	COG3586, COG3586, Uncharacterized conserved protein [Function unknown]	NA|414aa|up_3|NZ_CP042816.1_1581553_1582795_+	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|429aa|up_2|NZ_CP042816.1_1582968_1584255_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|710aa|up_1|NZ_CP042816.1_1584551_1586681_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|311aa|up_0|NZ_CP042816.1_1586673_1587606_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|600aa|down_0|NZ_CP042816.1_1588718_1590518_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|603aa|down_1|NZ_CP042816.1_1590575_1592384_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|840aa|down_2|NZ_CP042816.1_1592948_1595468_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|94aa|down_3|NZ_CP042816.1_1595708_1595990_+	pfam01527, HTH_Tnp_1, Transposase	NA|65aa|down_4|NZ_CP042816.1_1597013_1597208_-	NA	NA|199aa|down_5|NZ_CP042816.1_1597424_1598021_-	COG1437, CyaB, Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]	NA|260aa|down_6|NZ_CP042816.1_1598017_1598797_-	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|950aa|down_7|NZ_CP042816.1_1598859_1601709_-	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	NA|151aa|down_8|NZ_CP042816.1_1601870_1602323_-	NA	NA|60aa|down_9|NZ_CP042816.1_1602709_1602889_+	NA
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	7	1698110-1698245	7	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	TGACGTGTTATTGTAAACAGGCAAAACTCGTAGGCGAACCAA	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|88aa|up_7|NZ_CP042816.1_1690185_1690449_+,NA|393aa|up_5|NZ_CP042816.1_1691927_1693106_-,NA|65aa|up_3|NZ_CP042816.1_1693901_1694096_-,NA|102aa|up_1|NZ_CP042816.1_1695622_1695928_+,NA|267aa|down_8|NZ_CP042816.1_1708047_1708848_-	NA|670aa|up_9|NZ_CP042816.1_1687557_1689567_+	PRK06664, fliD, flagellar hook-associated protein FliD; Validated	NA|199aa|up_8|NZ_CP042816.1_1689573_1690170_+	COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and metabolism]	NA|88aa|up_7|NZ_CP042816.1_1690185_1690449_+	NA	NA|209aa|up_6|NZ_CP042816.1_1690757_1691384_+	sd00006, TPR, Tetratricopeptide repeat	NA|393aa|up_5|NZ_CP042816.1_1691927_1693106_-	NA	NA|229aa|up_4|NZ_CP042816.1_1693121_1693808_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|65aa|up_3|NZ_CP042816.1_1693901_1694096_-	NA	NA|268aa|up_2|NZ_CP042816.1_1694819_1695623_+	TIGR00713, Glutamate-1-semialdehyde_21-aminomutase, glutamate-1-semialdehyde-2,1-aminomutase	NA|102aa|up_1|NZ_CP042816.1_1695622_1695928_+	NA	NA|526aa|up_0|NZ_CP042816.1_1696102_1697680_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|266aa|down_0|NZ_CP042816.1_1698326_1699124_+	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|658aa|down_1|NZ_CP042816.1_1699136_1701110_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|513aa|down_2|NZ_CP042816.1_1701306_1702845_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|359aa|down_3|NZ_CP042816.1_1703149_1704226_-	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|175aa|down_4|NZ_CP042816.1_1704215_1704740_-	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|449aa|down_5|NZ_CP042816.1_1704736_1706083_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|227aa|down_6|NZ_CP042816.1_1706079_1706760_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|428aa|down_7|NZ_CP042816.1_1706752_1708036_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|267aa|down_8|NZ_CP042816.1_1708047_1708848_-	NA	NA|293aa|down_9|NZ_CP042816.1_1708853_1709732_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	8	1808657-1808794	8	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	TAAATTTTCAAAACTTCGCCCCTGCTCAACTCCAAACGATGTTT	44	1	1	1808701-1808750	NZ_CP042816.1_1670796-1670747	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA,NA	NA|1850aa|up_9|NZ_CP042816.1_1789754_1795304_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|778aa|up_8|NZ_CP042816.1_1795320_1797654_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|255aa|up_7|NZ_CP042816.1_1798120_1798885_+	pfam13614, AAA_31, AAA domain	NA|304aa|up_6|NZ_CP042816.1_1798868_1799780_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|172aa|up_5|NZ_CP042816.1_1799833_1800349_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|351aa|up_4|NZ_CP042816.1_1800955_1802008_-	PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional	NA|299aa|up_3|NZ_CP042816.1_1803243_1804140_+	pfam13176, TPR_7, Tetratricopeptide repeat	NA|432aa|up_2|NZ_CP042816.1_1804136_1805432_+	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins	NA|438aa|up_1|NZ_CP042816.1_1805520_1806834_+	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|257aa|up_0|NZ_CP042816.1_1807685_1808456_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|309aa|down_0|NZ_CP042816.1_1809235_1810162_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|559aa|down_1|NZ_CP042816.1_1811231_1812908_+	cd13583, PBP2_AlgQ_like_4, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|736aa|down_2|NZ_CP042816.1_1813005_1815213_+	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain	NA|399aa|down_3|NZ_CP042816.1_1815561_1816758_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|443aa|down_4|NZ_CP042816.1_1817236_1818565_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|218aa|down_5|NZ_CP042816.1_1819240_1819894_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|228aa|down_6|NZ_CP042816.1_1820008_1820692_+	cd07392, MPP_PAE1087, Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain	NA|291aa|down_7|NZ_CP042816.1_1821094_1821967_-	sd00036, LRR_3, leucine-rich repeats	NA|501aa|down_8|NZ_CP042816.1_1822430_1823933_-	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional	NA|278aa|down_9|NZ_CP042816.1_1823978_1824812_-	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	9	1965072-1965167	9	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	CAGGGTTGGTTTTGCCACGGACGGCAAAA	29	1	45	1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138|1965101-1965138	NZ_CP042816.1_484697-484660|NZ_CP042816.1_806668-806705|NZ_CP042816.1_1254870-1254907|NZ_CP042816.1_1402580-1402543|NZ_CP042816.1_1802792-1802829|NZ_CP042816.1_2501601-2501564|NZ_CP042816.1_3149696-3149733|NZ_CP042816.1_424194-424157|NZ_CP042816.1_511144-511107|NZ_CP042816.1_552271-552308|NZ_CP042816.1_752808-752771|NZ_CP042816.1_802590-802553|NZ_CP042816.1_948655-948692|NZ_CP042816.1_1363112-1363149|NZ_CP042816.1_1363225-1363262|NZ_CP042816.1_1408336-1408373|NZ_CP042816.1_1408447-1408484|NZ_CP042816.1_1714376-1714413|NZ_CP042816.1_1756488-1756451|NZ_CP042816.1_2067096-2067059|NZ_CP042816.1_2131999-2132036|NZ_CP042816.1_2166049-2166012|NZ_CP042816.1_2269713-2269750|NZ_CP042816.1_2614531-2614494|NZ_CP042816.1_2758201-2758238|NZ_CP042816.1_2807455-2807418|NZ_CP042816.1_3012156-3012193|NZ_CP042816.1_3025033-3024996|NZ_CP042816.1_154165-154128|NZ_CP042816.1_211554-211517|NZ_CP042816.1_376483-376520|NZ_CP042816.1_442410-442373|NZ_CP042816.1_699182-699145|NZ_CP042816.1_753031-752994|NZ_CP042816.1_812565-812528|NZ_CP042816.1_1216944-1216981|NZ_CP042816.1_1234488-1234525|NZ_CP042816.1_2157105-2157142|NZ_CP042816.1_2262561-2262598|NZ_CP042816.1_2364668-2364631|NZ_CP042816.1_2459868-2459905|NZ_CP042816.1_2612874-2612837|NZ_CP042816.1_2740231-2740268|NZ_CP042816.1_2744019-2743982|NZ_CP042816.1_2830354-2830317	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|272aa|up_5|NZ_CP042816.1_1955868_1956684_+,NA|248aa|down_4|NZ_CP042816.1_1971260_1972004_-,NA|72aa|down_6|NZ_CP042816.1_1974190_1974406_+,NA|488aa|down_8|NZ_CP042816.1_1976668_1978132_+	NA|117aa|up_9|NZ_CP042816.1_1952687_1953038_+	pfam00825, Ribonuclease_P, Ribonuclease P	NA|77aa|up_8|NZ_CP042816.1_1953043_1953274_+	pfam01809, Haemolytic, Haemolytic domain	NA|610aa|up_7|NZ_CP042816.1_1953310_1955140_+	PRK01318, PRK01318, membrane protein insertase; Provisional	NA|230aa|up_6|NZ_CP042816.1_1955136_1955826_+	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|272aa|up_5|NZ_CP042816.1_1955868_1956684_+	NA	NA|359aa|up_4|NZ_CP042816.1_1957004_1958081_+	cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases	NA|1235aa|up_3|NZ_CP042816.1_1958074_1961779_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|418aa|up_2|NZ_CP042816.1_1961744_1962998_-	pfam01882, DUF58, Protein of unknown function DUF58	NA|323aa|up_1|NZ_CP042816.1_1962994_1963963_-	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)	NA|265aa|up_0|NZ_CP042816.1_1963998_1964793_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|337aa|down_0|NZ_CP042816.1_1965516_1966527_+	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|349aa|down_1|NZ_CP042816.1_1966532_1967579_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|549aa|down_2|NZ_CP042816.1_1967575_1969222_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|458aa|down_3|NZ_CP042816.1_1969281_1970655_-	TIGR00792, Melibiose_carrier_protein, sugar (Glycoside-Pentoside-Hexuronide) transporter	NA|248aa|down_4|NZ_CP042816.1_1971260_1972004_-	NA	NA|447aa|down_5|NZ_CP042816.1_1972014_1973355_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|72aa|down_6|NZ_CP042816.1_1974190_1974406_+	NA	NA|551aa|down_7|NZ_CP042816.1_1974862_1976515_+	cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2	NA|488aa|down_8|NZ_CP042816.1_1976668_1978132_+	NA	NA|596aa|down_9|NZ_CP042816.1_1978871_1980659_+	COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	10	2109706-2109840	10	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	AAACTCGTTGGCGAAGTTGCTGTAAATTTTCAAAACTTCGCCC	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|139aa|up_4|NZ_CP042816.1_2102312_2102729_+,NA|179aa|down_3|NZ_CP042816.1_2113538_2114075_+,NA|63aa|down_6|NZ_CP042816.1_2115958_2116147_+,NA|403aa|down_7|NZ_CP042816.1_2116396_2117605_+,NA|104aa|down_9|NZ_CP042816.1_2119356_2119668_+	NA|802aa|up_9|NZ_CP042816.1_2096537_2098943_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|324aa|up_8|NZ_CP042816.1_2098939_2099911_-	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|268aa|up_7|NZ_CP042816.1_2099892_2100696_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|176aa|up_6|NZ_CP042816.1_2101192_2101720_+	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)	NA|198aa|up_5|NZ_CP042816.1_2101716_2102310_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|139aa|up_4|NZ_CP042816.1_2102312_2102729_+	NA	NA|70aa|up_3|NZ_CP042816.1_2103740_2103950_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|168aa|up_2|NZ_CP042816.1_2104046_2104550_+	PRK00150, def, peptide deformylase; Reviewed	NA|323aa|up_1|NZ_CP042816.1_2104549_2105518_+	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]	NA|1185aa|up_0|NZ_CP042816.1_2105850_2109405_-	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|80aa|down_0|NZ_CP042816.1_2110036_2110276_+	pfam04023, FeoA, FeoA domain	NA|77aa|down_1|NZ_CP042816.1_2110433_2110664_+	pfam04023, FeoA, FeoA domain	NA|942aa|down_2|NZ_CP042816.1_2110660_2113486_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|179aa|down_3|NZ_CP042816.1_2113538_2114075_+	NA	NA|343aa|down_4|NZ_CP042816.1_2114071_2115100_+	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|274aa|down_5|NZ_CP042816.1_2115128_2115950_+	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|63aa|down_6|NZ_CP042816.1_2115958_2116147_+	NA	NA|403aa|down_7|NZ_CP042816.1_2116396_2117605_+	NA	NA|400aa|down_8|NZ_CP042816.1_2117722_2118922_+	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|104aa|down_9|NZ_CP042816.1_2119356_2119668_+	NA
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	11	2269200-2269348	11	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG	47	1	18	2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301|2269247-2269301	NZ_CP042816.1_805431-805485|NZ_CP042816.1_1046814-1046868|NZ_CP042816.1_2066535-2066481|NZ_CP042816.1_2081275-2081221|NZ_CP042816.1_2269852-2269906|NZ_CP042816.1_2613002-2612948|NZ_CP042816.1_428011-427957|NZ_CP042816.1_474272-474326|NZ_CP042816.1_1592672-1592726|NZ_CP042816.1_2181807-2181861|NZ_CP042816.1_2360582-2360636|NZ_CP042816.1_340329-340275|NZ_CP042816.1_1147700-1147646|NZ_CP042816.1_1242223-1242169|NZ_CP042816.1_1295015-1294961|NZ_CP042816.1_1761250-1761196|NZ_CP042816.1_2066733-2066679|NZ_CP042816.1_2600949-2601003	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|267aa|up_8|NZ_CP042816.1_2256585_2257386_-,NA|61aa|up_3|NZ_CP042816.1_2262367_2262550_-,NA|123aa|down_1|NZ_CP042816.1_2270663_2271032_+,NA|95aa|down_3|NZ_CP042816.1_2271859_2272144_+	NA|399aa|up_9|NZ_CP042816.1_2255388_2256585_-	pfam13023, HD_3, HD domain	NA|267aa|up_8|NZ_CP042816.1_2256585_2257386_-	NA	NA|563aa|up_7|NZ_CP042816.1_2257443_2259132_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|291aa|up_6|NZ_CP042816.1_2259721_2260594_-	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|327aa|up_5|NZ_CP042816.1_2260606_2261587_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|158aa|up_4|NZ_CP042816.1_2261632_2262106_-	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|61aa|up_3|NZ_CP042816.1_2262367_2262550_-	NA	NA|418aa|up_2|NZ_CP042816.1_2264296_2265550_-	pfam13551, HTH_29, Winged helix-turn helix	NA|679aa|up_1|NZ_CP042816.1_2265817_2267854_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|176aa|up_0|NZ_CP042816.1_2268227_2268755_+	pfam14343, PrcB_C, PrcB C-terminal	NA|154aa|down_0|NZ_CP042816.1_2270152_2270614_+	PRK06654, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|123aa|down_1|NZ_CP042816.1_2270663_2271032_+	NA	NA|220aa|down_2|NZ_CP042816.1_2271024_2271684_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|95aa|down_3|NZ_CP042816.1_2271859_2272144_+	NA	NA|161aa|down_4|NZ_CP042816.1_2272474_2272957_-	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|398aa|down_5|NZ_CP042816.1_2272953_2274147_-	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|654aa|down_6|NZ_CP042816.1_2274143_2276105_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|down_7|NZ_CP042816.1_2276213_2277932_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|down_8|NZ_CP042816.1_2279128_2279836_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|down_9|NZ_CP042816.1_2280630_2281923_-	PRK08637, PRK08637, hypothetical protein; Provisional
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	12	2288828-2288940	12	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	CTGCGTGGAACCACCGCCGTCCATGGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA,NA|85aa|down_6|NZ_CP042816.1_2300723_2300978_+	NA|654aa|up_9|NZ_CP042816.1_2274143_2276105_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|up_8|NZ_CP042816.1_2276213_2277932_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|up_7|NZ_CP042816.1_2279128_2279836_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|up_6|NZ_CP042816.1_2280630_2281923_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|331aa|up_5|NZ_CP042816.1_2281987_2282980_+	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)	NA|282aa|up_4|NZ_CP042816.1_2282942_2283788_-	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins	NA|135aa|up_3|NZ_CP042816.1_2283780_2284185_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|110aa|up_2|NZ_CP042816.1_2284181_2284511_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|711aa|up_1|NZ_CP042816.1_2284541_2286674_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|447aa|up_0|NZ_CP042816.1_2286677_2288018_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|495aa|down_0|NZ_CP042816.1_2289025_2290510_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|917aa|down_1|NZ_CP042816.1_2290919_2293670_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|592aa|down_2|NZ_CP042816.1_2294118_2295894_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|397aa|down_3|NZ_CP042816.1_2296547_2297738_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|400aa|down_4|NZ_CP042816.1_2297867_2299067_+	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|400aa|down_5|NZ_CP042816.1_2299216_2300416_-	PRK06234, PRK06234, methionine gamma-lyase; Provisional	NA|85aa|down_6|NZ_CP042816.1_2300723_2300978_+	NA	NA|1203aa|down_7|NZ_CP042816.1_2301059_2304668_-	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|499aa|down_8|NZ_CP042816.1_2305052_2306549_+	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism]	NA|515aa|down_9|NZ_CP042816.1_2306562_2308107_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter
GCF_008153055.1_ASM815305v1	NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	13	2348727-2348816	13	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,cas9	Orphan	TTTTGACACGGACGTCAAAAACT	23	1	1	2348750-2348793	NZ_CP042816.1_794385-794428	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,cas9	NA|72aa|up_4|NZ_CP042816.1_2341930_2342146_-,NA|72aa|up_1|NZ_CP042816.1_2346569_2346785_+,NA|82aa|down_5|NZ_CP042816.1_2360688_2360934_+,NA|509aa|down_6|NZ_CP042816.1_2361066_2362593_+	NA|243aa|up_9|NZ_CP042816.1_2338208_2338937_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|175aa|up_8|NZ_CP042816.1_2338933_2339458_-	COG0806, RimM, RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]	NA|78aa|up_7|NZ_CP042816.1_2339476_2339710_-	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only]	NA|83aa|up_6|NZ_CP042816.1_2339728_2339977_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|470aa|up_5|NZ_CP042816.1_2340588_2341998_+	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|72aa|up_4|NZ_CP042816.1_2341930_2342146_-	NA	NA|237aa|up_3|NZ_CP042816.1_2342219_2342930_-	cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins	NA|1092aa|up_2|NZ_CP042816.1_2343151_2346427_+	sd00006, TPR, Tetratricopeptide repeat	NA|72aa|up_1|NZ_CP042816.1_2346569_2346785_+	NA	NA|394aa|up_0|NZ_CP042816.1_2346881_2348063_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|502aa|down_0|NZ_CP042816.1_2348869_2350375_-	PRK07107, PRK07107, IMP dehydrogenase	NA|201aa|down_1|NZ_CP042816.1_2351196_2351799_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|572aa|down_2|NZ_CP042816.1_2351837_2353553_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|577aa|down_3|NZ_CP042816.1_2353552_2355283_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|421aa|down_4|NZ_CP042816.1_2359003_2360266_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|82aa|down_5|NZ_CP042816.1_2360688_2360934_+	NA	NA|509aa|down_6|NZ_CP042816.1_2361066_2362593_+	NA	NA|94aa|down_7|NZ_CP042816.1_2363224_2363506_-	pfam00708, Acylphosphatase, Acylphosphatase	NA|264aa|down_8|NZ_CP042816.1_2363498_2364290_-	cd12110, PHP_HisPPase_Hisj_like, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase of Hisj like	NA|546aa|down_9|NZ_CP042816.1_2365249_2366887_+	pfam13360, PQQ_2, PQQ-like domain
