The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3186808	80164	151461	3186808	transposase,tRNA	Salicola_phage(12.5%)	60	NA	NA
WP_044634762.1|80164_81529_+|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
WP_002701293.1|81678_81966_+	HPF/RaiA family ribosome-associated protein	NA	NA	NA	NA	NA
WP_024752850.1|82485_84888_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_024752851.1|84921_87603_-	transcription elongation factor GreA	NA	A0A248SJQ8	Salicola_phage	27.1	1.3e-07
WP_024752852.1|87620_88568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044634763.1|89173_91576_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_002701312.1|91983_92997_-	ketopantoate reductase family protein	NA	NA	NA	NA	NA
WP_148878525.1|93298_93418_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002701318.1|93807_94506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148878526.1|94650_94863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002701322.1|95109_95736_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002701324.1|95728_97096_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_039915987.1|97169_97511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039915994.1|97702_99091_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_044634647.1|99349_100246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879952.1|100314_101952_-	hypothetical protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	42.3	8.5e-07
WP_024752858.1|102252_103428_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_044634645.1|103428_106518_+	exonuclease subunit SbcC	NA	NA	NA	NA	NA
WP_024752862.1|107252_107438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752863.1|107779_109435_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	27.7	3.1e-49
WP_052335749.1|110167_111421_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_024752864.1|111534_112005_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_024752865.1|112195_113557_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	27.9	8.9e-18
WP_024752866.1|113559_114330_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_024752867.1|114311_115061_+	UDP-N-acetyl-D-mannosamine transferase	NA	NA	NA	NA	NA
WP_024752868.1|115827_116955_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_002700578.1|116941_117664_-	rRNA methylase	NA	NA	NA	NA	NA
WP_002700580.1|117920_118466_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_148879331.1|118587_118869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752871.1|119083_120262_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002700584.1|120447_121131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879330.1|121708_122305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002700592.1|122350_123139_+	RNA polymerase sigma factor WhiG	NA	I1ZBD5	Salisaeta_icosahedral_phage	30.6	9.8e-09
WP_148879329.1|123149_125117_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_024752873.1|125097_125439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002700598.1|125443_126037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052335659.1|126792_128046_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_044634707.1|128676_130875_-	AAA family ATPase	NA	G3MBE0	Bacillus_virus	46.6	7.2e-102
WP_148879498.1|130867_131875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752876.1|131886_132564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752877.1|132730_133612_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	35.1	1.1e-29
WP_081718764.1|133584_134439_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_081718765.1|134536_134806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752878.1|134880_135663_-	TdeIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_148879326.1|135664_137272_-	site-specific DNA-methyltransferase	NA	NA	NA	NA	NA
WP_148879327.1|137402_138092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752881.1|138102_138801_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_148878577.1|139488_140742_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_148879499.1|141239_141437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752883.1|141759_142881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752884.1|142867_143641_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_044634710.1|143661_144204_+	signal peptidase II	NA	NA	NA	NA	NA
WP_024752886.1|144193_144466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752887.1|144920_146546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752888.1|146956_147790_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_002700602.1|147903_148128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752889.1|148188_148749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879500.1|148982_150236_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_148879501.1|150283_151159_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.4	4.8e-33
WP_024752891.1|151143_151461_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3186808	240361	250185	3186808	portal	Campylobacter_phage(11.11%)	13	NA	NA
WP_148879532.1|240361_241381_+	modification methylase	NA	A0A1B0XVT8	Campylobacter_phage	44.8	6.4e-37
WP_024751666.1|241580_241979_+	single-stranded DNA-binding protein	NA	E5DV85	Deep-sea_thermophilic_phage	41.4	1.4e-16
WP_148879533.1|241991_242351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044634232.1|242686_242878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148878754.1|242874_243672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148878755.1|243780_245376_+	hypothetical protein	NA	S5MBV8	Brevibacillus_phage	35.6	5.3e-70
WP_148878756.1|245408_247181_+|portal	phage portal protein	portal	F8WPY2	Bacillus_phage	29.6	7.0e-39
WP_081718581.1|247194_247524_+	hypothetical protein	NA	D2ECI8	Treponema_phage	64.9	2.7e-05
WP_148879534.1|247618_248359_+	oxidoreductase	NA	A0A139ZPI9	Marinitoga_camini_virus	42.2	3.6e-37
WP_148879535.1|248355_249234_+	DNA adenine methylase	NA	A0A0H3UZK1	Geobacillus_virus	32.8	5.6e-29
WP_024751735.1|249230_249560_+	DUF4406 domain-containing protein	NA	A0A1B0YZW9	Pseudomonas_phage	41.5	9.4e-14
WP_024751714.1|249556_249838_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082048203.1|249921_250185_+	DUF1064 domain-containing protein	NA	B0VK09	Azospirillum_phage	46.5	4.0e-07
>prophage 3
NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3186808	628850	698957	3186808	integrase,protease,transposase	uncultured_Caudovirales_phage(31.58%)	50	628755:628814	668043:669347
628755:628814	attL	CACTGCTGTCCAATTAAGTAATAAGATCTTTTAAAGAGTTAAGAGCTGTGTTATAATAGT	NA	NA	NA	NA
WP_024752136.1|628850_630044_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_148879591.1|630214_632209_-	RecQ family ATP-dependent DNA helicase	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	30.3	4.2e-40
WP_148879592.1|632210_633212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044634789.1|633397_634273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044634788.1|634272_634713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879593.1|634841_636695_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.6	2.5e-07
WP_024752137.1|636936_637833_-	site-specific DNA-methyltransferase	NA	A0A1D8KJW7	Synechococcus_phage	44.3	6.5e-41
WP_039943402.1|637825_638692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044634789.1|638911_639787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044634788.1|639786_640227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879591.1|640385_642380_-	RecQ family ATP-dependent DNA helicase	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	30.3	4.2e-40
WP_148879592.1|642381_643383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752137.1|643525_644422_-	site-specific DNA-methyltransferase	NA	A0A1D8KJW7	Synechococcus_phage	44.3	6.5e-41
WP_039943402.1|644414_645281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879231.1|645464_647270_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.6	2.5e-07
WP_148879222.1|647546_648314_-	hypothetical protein	NA	A0A2R2ZH57	Clostridioides_phage	35.3	1.2e-30
WP_148879221.1|648373_648964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879220.1|649088_651194_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	37.7	9.9e-08
WP_024752142.1|652342_653176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752143.1|653169_653838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752144.1|653909_654491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752145.1|654475_655054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879957.1|655484_656027_-	hypothetical protein	NA	R4THJ7	Phaeocystis_globosa_virus	45.0	7.9e-26
WP_024752139.1|656445_657591_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_148879958.1|657786_659430_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.6	2.3e-07
WP_148879594.1|659996_660947_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	A0A075BUR2	Microcystis_phage	32.9	2.1e-21
WP_148879595.1|661116_662202_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_148879596.1|662343_663366_-	restriction endonuclease subunit M	NA	A0A1B0XVT8	Campylobacter_phage	45.5	2.1e-35
WP_148879959.1|663518_663875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879597.1|664582_665848_-|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	40.2	6.1e-61
WP_148879960.1|666136_667780_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.3	1.3e-07
WP_024752136.1|668138_669332_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_148879214.1|669332_670286_+	Fic family protein	NA	NA	NA	NA	NA
668043:669347	attR	CACTGCTGTCCAATTAAGTAATAAGATCTTTTAAAGAGTTAAGAGCTGTGTTATAATAGTTTTTGGACAAACATACATACCACAAGGACTTAACTCATGTATCATTGTACTACAATTTTAACACAATTGCTACACCTTACTGACCAACTTGGCTTTAAAAAAATCAGTGCCGAAGAACAAGCAGATAAGCGATATCGACATTTTTCAGCACGTACTCAGCTGTTTACCATGGTCTTTGCACAATTAACAAAACAGAATAGTTTACGTTCAATTGAGCACGCAATATCCAGTGATAATGATTTATATCATGCAGGCATTACCGCAAAAATCACCCGAACAAATCTTGCCCATGCAAATGAATATAGACCAAGTATCATATTTGAAAAATTTTACTTTCATGTGCTTAAGTATTACACAAAGCTCGTAAACAAACCAGTGAATATATTCGGCAAGCATACCAAGCTCATCGATGCAACAACCATCTCATTGAATATTAAGCAATACAAATGGGCAAAATTTAGAAGCACAAAGAGCGGAATAAAAATACATACCCGTTTTGATTATGAAGCAAACTGTGCTGATTATCTTTTTATCACCAATGCGAAAGAACATGAAAACAATACGCTTAAAAACATGCACCTAACAAAACAGGATATTGCTGTTTTTGATCGAGGTTATTTTAATAAGAAACAGTTCTATGAGTTTACAAAGAGTGAAATATCCTTTGTAACAAGACTTAAATCAAATGTTATATACACCGTAGTTGATCGATATGCCGTAAGCGGACATGAAAATGATACGTATAAAATTATCAGTGATGAGAAAATTACTCTGAATGTGAGTATTTCAAAAAAGAAGGAAAGCGTGGTAACACTACGAAAAATCATCTCAAAAGATTTGCAGTCAAAAAAGAAAATAGTATTGCTGACAAATTTGTTTGAAATAGATTCTCTTGAGGTAGCTGAACTGTATAAAAAAAGATGGACCATTGAATTATTCTTCAAGATGATAAAACAGAATCTGAAAATTAAGAAATTTTATGGACATAGCGAAAATGCGGTCAAGACACAGATATGGATTGCCGTTATTACGCATATGCTCTTTTTAATTTTACAAGCTGAAACCAACTATAGGCAAAGGAGCTTTTCATATTTTTGTTCTGAAATTTCTGTCGTACTGTTTCTGCATCGCAGTCTTAAAAAATGGTTTTGTGGTGATCATGAAAAACCAGTTCCTAAATTAATTCACCATCCTAATACCTCAGAGCTTTCTCAAAAGCCTCCAAGTTAATTGGACAGCAGTGAT	NA	NA	NA	NA
WP_044634957.1|670505_671654_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	31.8	5.0e-38
WP_148879598.1|672335_676487_+	TIGR02680 family protein	NA	NA	NA	NA	NA
WP_148879212.1|676709_678596_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.4	6.0e-105
WP_002699611.1|678801_679020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024752158.1|679317_679683_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_024752159.1|680002_681292_+	DUF2399 domain-containing protein	NA	NA	NA	NA	NA
WP_024752160.1|681603_682239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879599.1|682235_685772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024751992.1|685899_686916_-|transposase	IS5 family transposase	transposase	Q38213	Escherichia_phage	30.3	9.0e-23
WP_081718667.1|687319_687562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148878912.1|687622_688819_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_148879396.1|689033_690338_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_148878573.1|690646_691150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879600.1|691190_693437_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	50.0	4.0e-07
WP_024752166.1|694956_696738_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	37.3	9.0e-111
WP_039943445.1|696851_697580_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_024752168.1|697928_698957_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
>prophage 4
NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3186808	1206134	1272615	3186808	integrase,protease,transposase,tRNA	Brevibacillus_phage(12.5%)	55	1201610:1201625	1232867:1232882
1201610:1201625	attL	GCATTGAATTCTTTTT	NA	NA	NA	NA
WP_148878807.1|1206134_1207058_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	30.2	1.6e-26
WP_024753359.1|1207089_1207632_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_044634343.1|1207631_1209047_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	27.5	3.6e-38
WP_148879671.1|1208970_1209183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002695188.1|1209555_1209966_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_024753361.1|1209988_1210447_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_002695192.1|1210475_1210844_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_024753362.1|1210943_1212647_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_024753363.1|1212648_1213710_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_002695197.1|1213759_1214689_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_024753364.1|1214703_1216140_+	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_024753365.1|1216146_1216590_+	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_081718819.1|1216938_1217130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753366.1|1217237_1218407_+	type III PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_148878810.1|1219007_1219193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753367.1|1219402_1219813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753368.1|1219823_1220954_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002695719.1|1221043_1222210_+	DEAD/DEAH box helicase	NA	E3T5E1	Cafeteria_roenbergensis_virus	29.5	4.9e-41
WP_024753369.1|1222206_1223907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052335785.1|1223916_1225509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753371.1|1225516_1226650_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_024753373.1|1227002_1227740_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002695738.1|1230264_1230633_+	DUF1667 domain-containing protein	NA	NA	NA	NA	NA
WP_024753376.1|1230629_1232189_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_024753377.1|1232235_1233999_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
1232867:1232882	attR	AAAAAGAATTCAATGC	NA	NA	NA	NA
WP_148879965.1|1234470_1234662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753378.1|1234768_1235221_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_002697877.1|1235217_1235829_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_002697870.1|1236305_1237346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753379.1|1237917_1238667_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_002697862.1|1238786_1238957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753380.1|1239427_1240624_+	amidohydrolase	NA	NA	NA	NA	NA
WP_002697855.1|1240620_1241445_+	DUF3100 domain-containing protein	NA	NA	NA	NA	NA
WP_002697854.1|1241434_1241881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039914746.1|1242805_1244056_-	radical SAM protein	NA	NA	NA	NA	NA
WP_002697846.1|1244119_1245022_-	radical SAM protein	NA	NA	NA	NA	NA
WP_052335749.1|1245475_1246729_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_024753383.1|1247929_1248346_-	YjbQ family protein	NA	NA	NA	NA	NA
WP_148879672.1|1248406_1249615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002697839.1|1250093_1251965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753385.1|1252092_1254672_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	31.2	4.0e-91
WP_002695817.1|1255221_1256157_+	ribokinase	NA	NA	NA	NA	NA
WP_148879673.1|1256153_1256855_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_024753388.1|1257211_1258240_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	42.5	1.1e-65
WP_044634354.1|1258460_1259789_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_148878815.1|1259880_1261038_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.3	1.1e-08
WP_024753391.1|1261079_1261577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879674.1|1263049_1264303_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_081718823.1|1264758_1265079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002699885.1|1265276_1265963_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_002699887.1|1266018_1268274_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002699889.1|1268270_1269104_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_148879675.1|1269103_1269565_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	35.8	1.0e-18
WP_148879676.1|1270107_1270986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002699896.1|1271394_1272615_+|protease	trypsin-like serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	30.5	4.7e-26
>prophage 5
NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3186808	1781834	1845932	3186808	protease,coat,transposase,tRNA	Staphylococcus_phage(20.0%)	44	NA	NA
WP_148879765.1|1781834_1784420_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	55.3	3.4e-268
WP_148879766.1|1784492_1784735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879048.1|1784762_1785992_+|coat	spore coat protein	coat	NA	NA	NA	NA
WP_002700544.1|1786022_1786442_+	J domain-containing protein	NA	NA	NA	NA	NA
WP_024752405.1|1786443_1788396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002700547.1|1788392_1789580_+	DNA polymerase IV	NA	A0A290GHP0	Caldibacillus_phage	25.8	2.4e-11
WP_148879767.1|1789754_1795304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024752403.1|1795320_1797654_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_002700565.1|1798120_1798885_+	ParA family protein	NA	Q8JL10	Natrialba_phage	26.9	3.1e-20
WP_024752402.1|1798868_1799780_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	35.8	2.5e-16
WP_148879768.1|1799833_1800349_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_044634962.1|1800955_1802008_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_148879425.1|1803243_1804140_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_024752400.1|1804136_1805432_+	lytic transglycosylase domain-containing protein	NA	C1KFN7	Lactobacillus_virus	31.2	5.2e-07
WP_002695130.1|1805520_1806834_+	OmpA family protein	NA	NA	NA	NA	NA
WP_024752398.1|1807685_1808456_+	ComF family protein	NA	NA	NA	NA	NA
WP_044634961.1|1809235_1810162_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_081718726.1|1811231_1812908_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_148878890.1|1813005_1815213_+	glycoside hydrolase family 95 protein	NA	NA	NA	NA	NA
WP_148878912.1|1815561_1816758_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_024752393.1|1817236_1818565_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_024752392.1|1819240_1819894_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_044634654.1|1820008_1820692_+	serine/threonine protein phosphatase	NA	NA	NA	NA	NA
WP_024752390.1|1821094_1821967_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_024752389.1|1822430_1823933_-	NADPH-dependent glutamate synthase	NA	A0A249XZT7	Enterococcus_phage	26.3	7.1e-08
WP_002699093.1|1823978_1824812_-	sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA	NA	NA	NA	NA
WP_002699091.1|1824923_1825517_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	38.9	3.1e-31
WP_148879769.1|1827515_1828769_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_148879770.1|1830932_1831871_+	AEC family transporter	NA	NA	NA	NA	NA
WP_002699078.1|1832357_1832735_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002699076.1|1832747_1833614_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.1	2.0e-18
WP_024751880.1|1833615_1834311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148878990.1|1834775_1835102_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_024751882.1|1835062_1835314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044634652.1|1835631_1836426_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	36.5	1.6e-43
WP_002698290.1|1836422_1837709_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.9	1.7e-90
WP_024751884.1|1837727_1838309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751886.1|1839184_1839934_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	NA	NA	NA	NA
WP_044634651.1|1840353_1840998_-	DUF3160 domain-containing protein	NA	NA	NA	NA	NA
WP_148879429.1|1840939_1841038_-	DUF3160 domain-containing protein	NA	NA	NA	NA	NA
WP_148879771.1|1841062_1842226_-	DUF3160 domain-containing protein	NA	NA	NA	NA	NA
WP_024751890.1|1843090_1843474_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_024751891.1|1843518_1844148_-	adenylate kinase	NA	NA	NA	NA	NA
WP_148879772.1|1844840_1845932_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3186808	1914668	1925980	3186808		Clostridium_phage(11.11%)	14	NA	NA
WP_148879785.1|1914668_1916285_-	hypothetical protein	NA	A0A0A8WIZ2	Clostridium_phage	32.8	5.4e-30
WP_002695934.1|1916281_1916665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879786.1|1916667_1918161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879787.1|1918188_1919652_-	DNA-packaging protein	NA	A0A0K1LMR9	Caulobacter_phage	32.7	3.0e-51
WP_148879788.1|1919629_1920232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879789.1|1920816_1921341_-	ASCH domain-containing protein	NA	A0A291AUQ6	Sinorhizobium_phage	26.8	3.9e-06
WP_081718583.1|1921429_1921693_-	DUF1064 domain-containing protein	NA	B8Q5A6	Abalone_shriveling_syndrome-associated_virus	46.3	2.3e-07
WP_024751734.1|1921776_1922058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751735.1|1922054_1922384_-	DUF4406 domain-containing protein	NA	A0A1B0YZW9	Pseudomonas_phage	41.5	9.4e-14
WP_148879073.1|1922487_1923309_-	oxidoreductase	NA	A0A139ZPI9	Marinitoga_camini_virus	42.1	2.3e-37
WP_081718571.1|1923403_1923745_-	hypothetical protein	NA	D2ECI8	Treponema_phage	64.9	2.8e-05
WP_044634724.1|1923772_1924276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879973.1|1924497_1925184_-	site-specific DNA-methyltransferase	NA	A0A1P8CMS8	Staphylococcus_phage	35.2	1.0e-33
WP_024751628.1|1925191_1925980_-	ATP-binding protein	NA	A0A0D4DBZ2	Acinetobacter_phage	25.7	2.8e-11
>prophage 7
NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3186808	2748860	2757629	3186808		Bacillus_phage(66.67%)	6	NA	NA
WP_024753051.1|2748860_2749739_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	4.1e-08
WP_024753050.1|2749731_2750394_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	26.7	1.2e-07
WP_044634514.1|2750513_2752247_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.3	1.8e-34
WP_044634515.1|2752243_2753929_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	9.6e-38
WP_024753047.1|2754102_2755836_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.8	1.6e-35
WP_044634516.1|2755832_2757629_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.5	2.0e-25
>prophage 8
NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3186808	2761399	2808329	3186808	integrase,transposase,tRNA	Lactobacillus_phage(33.33%)	43	2769339:2769385	2808330:2808376
WP_024753043.1|2761399_2763118_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_148879206.1|2763795_2764194_-	DUF1284 domain-containing protein	NA	NA	NA	NA	NA
WP_024753041.1|2764193_2764700_-	META domain-containing protein	NA	NA	NA	NA	NA
WP_002698206.1|2764913_2765351_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_024753040.1|2765600_2766692_-	nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_002698199.1|2767445_2768225_+	TSUP family transporter	NA	NA	NA	NA	NA
WP_148879898.1|2768250_2769024_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
2769339:2769385	attL	TGGAAATGTCAATATCAGTTCAGTATTTTTATCCCCTAAATGTATGT	NA	NA	NA	NA
WP_148879899.1|2769385_2769733_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6J1X2	Lactobacillus_phage	40.4	2.5e-09
WP_148879205.1|2769943_2770231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753037.1|2770239_2770506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081718783.1|2771137_2771989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753035.1|2772569_2773166_+	cytidylate kinase-like family protein	NA	NA	NA	NA	NA
WP_148879900.1|2773362_2774436_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_044634518.1|2774504_2775446_-	transketolase	NA	NA	NA	NA	NA
WP_148879901.1|2775442_2776273_-	transketolase	NA	G9E5U1	Micromonas_pusilla_virus	33.3	3.2e-10
WP_024753032.1|2776480_2777749_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA	NA
WP_024753031.1|2777833_2778118_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_024753030.1|2778834_2779491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753029.1|2779492_2780218_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_024753028.1|2780219_2780771_-	biotin transporter BioY	NA	NA	NA	NA	NA
WP_044634522.1|2781788_2782895_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_044634523.1|2783342_2784425_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_148879902.1|2784447_2786535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024753023.1|2786590_2787214_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.1	8.8e-29
WP_024753022.1|2787213_2788860_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_024753021.1|2788874_2789894_-	thiamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002699538.1|2790364_2791330_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_148879903.1|2791360_2792389_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_002699534.1|2792439_2793489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753017.1|2793698_2794313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002699530.1|2794353_2794635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879397.1|2794719_2794896_-	DUF2075 domain-containing protein	NA	NA	NA	NA	NA
WP_024753016.1|2794892_2795330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148879904.1|2795494_2796748_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_002696721.1|2796872_2797073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024753013.1|2797190_2797415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879905.1|2797625_2798198_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_148878579.1|2798145_2798268_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_148879906.1|2798450_2800496_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	32.1	1.1e-06
WP_148879907.1|2800870_2804287_-	UvrD-helicase domain-containing protein	NA	A0A068EQC7	Bacillus_phage	23.1	1.2e-15
WP_148878580.1|2804286_2807058_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_024752184.1|2807588_2807870_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_047170260.1|2807981_2808329_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6J1X2	Lactobacillus_phage	43.4	4.3e-09
2808330:2808376	attR	ACATACATTTAGGGGATAAAAATACTGAACTGATATTGACATTTCCA	NA	NA	NA	NA
>prophage 9
NZ_CP042816	Treponema phagedenis strain B31.4 chromosome, complete genome	3186808	3028670	3087473	3186808	integrase,transposase,tRNA	Macacine_betaherpesvirus(18.18%)	49	3036665:3036724	3087556:3087626
WP_002700233.1|3028670_3030560_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_024751843.1|3031295_3033620_-|tRNA	methionine--tRNA ligase	tRNA	A0A2K9KZR3	Tupanvirus	42.9	5.5e-116
WP_044634922.1|3033829_3034111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081718609.1|3034065_3034269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024751842.1|3034292_3035435_-	cysteine desulfurase	NA	H7BUW1	unidentified_phage	34.3	5.6e-21
WP_024751841.1|3035496_3036252_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
3036665:3036724	attL	CAACGGTGAGCAAACTTACCATAGGGCGAAGTTTTGAAAATTTACTGTAACTTCGCCAAC	NA	NA	NA	NA
WP_148879931.1|3036958_3039178_-	leucine-rich repeat protein	NA	NA	NA	NA	NA
WP_148879932.1|3039455_3039947_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A2I6AZV9	Macacine_betaherpesvirus	43.9	2.3e-16
WP_024751837.1|3040108_3040876_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_148879984.1|3041800_3044965_-	DEAD/DEAH box helicase family protein	NA	A0A2K5B2C2	Erysipelothrix_phage	32.6	1.4e-125
WP_148879985.1|3044988_3046887_-	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	42.8	1.6e-105
WP_148878685.1|3046948_3047176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044634428.1|3047678_3049058_+	tryptophanase	NA	NA	NA	NA	NA
WP_148879933.1|3049166_3050489_+	sodium-dependent transporter	NA	NA	NA	NA	NA
WP_002700688.1|3050601_3051333_-	endonuclease III	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	31.4	3.7e-18
WP_148879986.1|3051614_3052184_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_002700690.1|3052642_3053317_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	41.6	2.8e-36
WP_024751829.1|3053364_3053646_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_148878683.1|3053729_3054878_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_024751828.1|3054900_3055707_+	TrmH family RNA methyltransferase	NA	NA	NA	NA	NA
WP_024751827.1|3056104_3056860_+	formate/nitrite transporter family protein	NA	NA	NA	NA	NA
WP_024751826.1|3056899_3057676_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
WP_002700699.1|3057827_3057989_+	rubredoxin	NA	NA	NA	NA	NA
WP_148879404.1|3058026_3058314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879934.1|3058632_3060381_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.5	8.3e-08
WP_148878677.1|3060454_3060655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024751767.1|3060808_3062110_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_024751766.1|3062106_3063363_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_002696846.1|3064144_3064777_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_024751764.1|3064769_3065795_+	sugar kinase	NA	NA	NA	NA	NA
WP_148879935.1|3065893_3068494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024751762.1|3069205_3069556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148878730.1|3069822_3070797_+	diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	36.8	8.1e-05
WP_024751760.1|3070793_3071768_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_024751759.1|3071922_3072429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879936.1|3072440_3074009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002696392.1|3074266_3075556_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_024751757.1|3075583_3076447_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_024751756.1|3076469_3077294_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_052335749.1|3077443_3078697_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_002696386.1|3079251_3080721_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002696384.1|3080739_3081288_-	antiterminator LoaP	NA	NA	NA	NA	NA
WP_148878732.1|3081550_3081754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879937.1|3082111_3082987_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.4	6.3e-33
WP_024752891.1|3082971_3083289_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_148879938.1|3083890_3084541_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_024752898.1|3084952_3085315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148879939.1|3085498_3086128_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	38.8	8.9e-29
WP_024752896.1|3087191_3087473_-|transposase	transposase	transposase	NA	NA	NA	NA
3087556:3087626	attR	GTTGGCGAAGTTACAGTAAATTTTCAAAACTTCGCCCTATGGTAAGTTTGCTCACCGTTGCGCCGTGTCGG	NA	NA	NA	NA
