assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	1	342240-342329	1	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TTTTGACACGGACGTCAAAAACT	23	1	2	342263-342306|342263-342306	NZ_CP042815.1_231612-231569|NZ_CP042815.1_231902-231859	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA|62aa|down_4|NZ_CP042815.1_352248_352434_+,NA|171aa|down_9|NZ_CP042815.1_359146_359659_-	NA|229aa|up_9|NZ_CP042815.1_331614_332301_+	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|177aa|up_8|NZ_CP042815.1_332297_332828_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|73aa|up_7|NZ_CP042815.1_332833_333052_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|121aa|up_6|NZ_CP042815.1_333205_333568_+	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]	NA|455aa|up_5|NZ_CP042815.1_333596_334961_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|172aa|up_4|NZ_CP042815.1_335036_335552_-	smart00388, HisKA, His Kinase A (phosphoacceptor) domain	NA|623aa|up_3|NZ_CP042815.1_335554_337423_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|336aa|up_2|NZ_CP042815.1_337422_338430_-	TIGR00651, Phosphate_acetyltransferase, phosphate acetyltransferase	NA|256aa|up_1|NZ_CP042815.1_339045_339813_-	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB	NA|469aa|up_0|NZ_CP042815.1_339816_341223_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|502aa|down_0|NZ_CP042815.1_342382_343888_-	PRK07107, PRK07107, IMP dehydrogenase	NA|201aa|down_1|NZ_CP042815.1_344709_345312_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|572aa|down_2|NZ_CP042815.1_345350_347066_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|577aa|down_3|NZ_CP042815.1_347065_348796_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|62aa|down_4|NZ_CP042815.1_352248_352434_+	NA	NA|413aa|down_5|NZ_CP042815.1_352686_353925_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|251aa|down_6|NZ_CP042815.1_354491_355244_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|348aa|down_7|NZ_CP042815.1_355240_356284_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|335aa|down_8|NZ_CP042815.1_356280_357285_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|171aa|down_9|NZ_CP042815.1_359146_359659_-	NA
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	2	352332-352481	2	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TTTTGCCATGGACGGCAAAATTATGCCGTGCGGTGGTTCCACGCAG	46	1	1	352378-352435	NZ_CP042815.1_2605237-2605294	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA|171aa|down_4|NZ_CP042815.1_359146_359659_-,NA|499aa|down_8|NZ_CP042815.1_364283_365780_-,NA|202aa|down_9|NZ_CP042815.1_365715_366321_-	NA|455aa|up_9|NZ_CP042815.1_333596_334961_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|172aa|up_8|NZ_CP042815.1_335036_335552_-	smart00388, HisKA, His Kinase A (phosphoacceptor) domain	NA|623aa|up_7|NZ_CP042815.1_335554_337423_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|336aa|up_6|NZ_CP042815.1_337422_338430_-	TIGR00651, Phosphate_acetyltransferase, phosphate acetyltransferase	NA|256aa|up_5|NZ_CP042815.1_339045_339813_-	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB	NA|469aa|up_4|NZ_CP042815.1_339816_341223_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|502aa|up_3|NZ_CP042815.1_342382_343888_-	PRK07107, PRK07107, IMP dehydrogenase	NA|201aa|up_2|NZ_CP042815.1_344709_345312_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|572aa|up_1|NZ_CP042815.1_345350_347066_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|577aa|up_0|NZ_CP042815.1_347065_348796_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|413aa|down_0|NZ_CP042815.1_352686_353925_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|251aa|down_1|NZ_CP042815.1_354491_355244_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|348aa|down_2|NZ_CP042815.1_355240_356284_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|335aa|down_3|NZ_CP042815.1_356280_357285_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|171aa|down_4|NZ_CP042815.1_359146_359659_-	NA	NA|216aa|down_5|NZ_CP042815.1_359746_360394_-	pfam13551, HTH_29, Winged helix-turn helix	NA|602aa|down_6|NZ_CP042815.1_360771_362577_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|569aa|down_7|NZ_CP042815.1_362590_364297_-	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|499aa|down_8|NZ_CP042815.1_364283_365780_-	NA	NA|202aa|down_9|NZ_CP042815.1_365715_366321_-	NA
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	3	645664-645773	3	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AGGCTTTTAGTTCCTGCCATAGATTAAAAAGTATT	35	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA|68aa|down_2|NZ_CP042815.1_649212_649416_-,NA|82aa|down_4|NZ_CP042815.1_652428_652674_+,NA|77aa|down_6|NZ_CP042815.1_655879_656110_-,NA|75aa|down_9|NZ_CP042815.1_658358_658583_+	NA|225aa|up_9|NZ_CP042815.1_630009_630684_-	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|185aa|up_8|NZ_CP042815.1_631156_631711_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|244aa|up_7|NZ_CP042815.1_631992_632724_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|441aa|up_6|NZ_CP042815.1_632836_634159_-	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|460aa|up_5|NZ_CP042815.1_634267_635647_-	PRK13238, tnaA, tryptophanase	NA|76aa|up_4|NZ_CP042815.1_636153_636381_+	cd10311, PLDc_N_DEXD_c, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|633aa|up_3|NZ_CP042815.1_636442_638341_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|1055aa|up_2|NZ_CP042815.1_638364_641529_+	COG3587, COG3587, Restriction endonuclease [Defense mechanisms]	NA|256aa|up_1|NZ_CP042815.1_642454_643222_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|164aa|up_0|NZ_CP042815.1_643383_643875_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|252aa|down_0|NZ_CP042815.1_647229_647985_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|381aa|down_1|NZ_CP042815.1_648046_649189_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|68aa|down_2|NZ_CP042815.1_649212_649416_-	NA	NA|775aa|down_3|NZ_CP042815.1_649850_652175_+	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|82aa|down_4|NZ_CP042815.1_652428_652674_+	NA	NA|630aa|down_5|NZ_CP042815.1_652910_654800_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|77aa|down_6|NZ_CP042815.1_655879_656110_-	NA	NA|177aa|down_7|NZ_CP042815.1_656234_656765_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|403aa|down_8|NZ_CP042815.1_656896_658105_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|75aa|down_9|NZ_CP042815.1_658358_658583_+	NA
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	4	717508-717602	4	CRISPRCasFinder	no	cas3	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Unclear	TGTCAAAAACTAAACCACGAGTTT	24	0	0	NA	NA	NA	1	1	Unclear	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|193aa|up_9|NZ_CP042815.1_706944_707523_+,NA|759aa|up_8|NZ_CP042815.1_707640_709917_+,NA|185aa|up_6|NZ_CP042815.1_711251_711806_-,NA|147aa|up_3|NZ_CP042815.1_713171_713612_+,NA|72aa|down_0|NZ_CP042815.1_717708_717924_-,NA|69aa|down_5|NZ_CP042815.1_723488_723695_-	NA|193aa|up_9|NZ_CP042815.1_706944_707523_+	NA	NA|759aa|up_8|NZ_CP042815.1_707640_709917_+	NA	NA|434aa|up_7|NZ_CP042815.1_709946_711248_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|185aa|up_6|NZ_CP042815.1_711251_711806_-	NA	NA|278aa|up_5|NZ_CP042815.1_711914_712748_+	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|98aa|up_4|NZ_CP042815.1_712881_713175_+	pfam14213, DUF4325, STAS-like domain of unknown function (DUF4325)	NA|147aa|up_3|NZ_CP042815.1_713171_713612_+	NA	NA|283aa|up_2|NZ_CP042815.1_713679_714528_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|517aa|up_1|NZ_CP042815.1_714533_716084_-	pfam13646, HEAT_2, HEAT repeats	NA|377aa|up_0|NZ_CP042815.1_716087_717218_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|72aa|down_0|NZ_CP042815.1_717708_717924_-	NA	NA|213aa|down_1|NZ_CP042815.1_718030_718669_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|418aa|down_2|NZ_CP042815.1_718884_720138_-	pfam00665, rve, Integrase core domain	NA|381aa|down_3|NZ_CP042815.1_720296_721439_+	pfam07907, YibE_F, YibE/F-like protein	NA|630aa|down_4|NZ_CP042815.1_721546_723436_+	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase	NA|69aa|down_5|NZ_CP042815.1_723488_723695_-	NA	cas3|685aa|down_6|NZ_CP042815.1_724391_726446_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|584aa|down_7|NZ_CP042815.1_726515_728267_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|419aa|down_8|NZ_CP042815.1_728855_730112_+	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|156aa|down_9|NZ_CP042815.1_730083_730551_-	COG1671, COG1671, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	5	1219754-1219888	5	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	GGGCGAAGTTTTGAAAATTTACAGCAACTTCGCCAACGAGTTT	43	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|104aa|up_9|NZ_CP042815.1_1209925_1210237_-,NA|403aa|up_7|NZ_CP042815.1_1211988_1213197_-,NA|63aa|up_6|NZ_CP042815.1_1213446_1213635_-,NA|179aa|up_3|NZ_CP042815.1_1215518_1216055_-,NA|139aa|down_4|NZ_CP042815.1_1226865_1227282_-	NA|104aa|up_9|NZ_CP042815.1_1209925_1210237_-	NA	NA|400aa|up_8|NZ_CP042815.1_1210671_1211871_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|403aa|up_7|NZ_CP042815.1_1211988_1213197_-	NA	NA|63aa|up_6|NZ_CP042815.1_1213446_1213635_-	NA	NA|274aa|up_5|NZ_CP042815.1_1213643_1214465_-	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|343aa|up_4|NZ_CP042815.1_1214493_1215522_-	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|179aa|up_3|NZ_CP042815.1_1215518_1216055_-	NA	NA|942aa|up_2|NZ_CP042815.1_1216107_1218933_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|77aa|up_1|NZ_CP042815.1_1218929_1219160_-	pfam04023, FeoA, FeoA domain	NA|80aa|up_0|NZ_CP042815.1_1219317_1219557_-	pfam04023, FeoA, FeoA domain	NA|1185aa|down_0|NZ_CP042815.1_1220188_1223743_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|323aa|down_1|NZ_CP042815.1_1224075_1225044_-	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]	NA|168aa|down_2|NZ_CP042815.1_1225043_1225547_-	PRK00150, def, peptide deformylase; Reviewed	NA|70aa|down_3|NZ_CP042815.1_1225644_1225854_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|139aa|down_4|NZ_CP042815.1_1226865_1227282_-	NA	NA|198aa|down_5|NZ_CP042815.1_1227284_1227878_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|176aa|down_6|NZ_CP042815.1_1227874_1228402_-	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)	NA|268aa|down_7|NZ_CP042815.1_1228898_1229702_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|324aa|down_8|NZ_CP042815.1_1229683_1230655_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|802aa|down_9|NZ_CP042815.1_1230651_1233057_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	6	1723100-1723210	6	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	GAGTTTAAAAACTTCCTGTTATAAAAAG	28	1	1	1723128-1723182	NZ_CP042815.1_1712752-1712806	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|64aa|up_5|NZ_CP042815.1_1718761_1718953_-,NA|62aa|up_1|NZ_CP042815.1_1722571_1722757_-,NA|62aa|up_0|NZ_CP042815.1_1722789_1722975_-,NA|72aa|down_0|NZ_CP042815.1_1723266_1723482_-,NA|524aa|down_4|NZ_CP042815.1_1726228_1727800_+,NA|267aa|down_6|NZ_CP042815.1_1728680_1729481_+	NA|453aa|up_9|NZ_CP042815.1_1714792_1716151_+	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|126aa|up_8|NZ_CP042815.1_1716196_1716574_+	pfam10941, DUF2620, Protein of unknown function DUF2620	NA|437aa|up_7|NZ_CP042815.1_1716570_1717881_+	pfam10797, YhfT, Protein of unknown function	NA|296aa|up_6|NZ_CP042815.1_1717877_1718765_+	PRK09875, PRK09875, phosphotriesterase-related protein	NA|64aa|up_5|NZ_CP042815.1_1718761_1718953_-	NA	NA|365aa|up_4|NZ_CP042815.1_1719025_1720120_+	cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes	NA|389aa|up_3|NZ_CP042815.1_1720120_1721287_+	cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX	NA|405aa|up_2|NZ_CP042815.1_1721280_1722495_+	PRK12383, PRK12383, putative mutase; Provisional	NA|62aa|up_1|NZ_CP042815.1_1722571_1722757_-	NA	NA|62aa|up_0|NZ_CP042815.1_1722789_1722975_-	NA	NA|72aa|down_0|NZ_CP042815.1_1723266_1723482_-	NA	NA|193aa|down_1|NZ_CP042815.1_1723412_1723991_+	pfam00665, rve, Integrase core domain	NA|376aa|down_2|NZ_CP042815.1_1724736_1725865_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|128aa|down_3|NZ_CP042815.1_1725861_1726245_+	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY	NA|524aa|down_4|NZ_CP042815.1_1726228_1727800_+	NA	NA|293aa|down_5|NZ_CP042815.1_1727796_1728675_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|267aa|down_6|NZ_CP042815.1_1728680_1729481_+	NA	NA|428aa|down_7|NZ_CP042815.1_1729492_1730776_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|227aa|down_8|NZ_CP042815.1_1730768_1731449_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|449aa|down_9|NZ_CP042815.1_1731445_1732792_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	7	2143099-2143247	7	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG	47	1	23	2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200|2143146-2143200	NZ_CP042815.1_220566-220512|NZ_CP042815.1_1248320-1248374|NZ_CP042815.1_1264522-1264576|NZ_CP042815.1_2143751-2143805|NZ_CP042815.1_2230516-2230570|NZ_CP042815.1_2230670-2230724|NZ_CP042815.1_2497247-2497193|NZ_CP042815.1_2720987-2720933|NZ_CP042815.1_1584018-1584072|NZ_CP042815.1_2030755-2030809|NZ_CP042815.1_2225816-2225762|NZ_CP042815.1_2667532-2667478|NZ_CP042815.1_2678166-2678220|NZ_CP042815.1_3126188-3126134|NZ_CP042815.1_3174371-3174425|NZ_CP042815.1_839953-840007|NZ_CP042815.1_1164466-1164412|NZ_CP042815.1_1264127-1264181|NZ_CP042815.1_1264324-1264378|NZ_CP042815.1_1459892-1459838|NZ_CP042815.1_1677224-1677278|NZ_CP042815.1_2673014-2673068|NZ_CP042815.1_3245721-3245775	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|267aa|up_7|NZ_CP042815.1_2131938_2132739_-,NA|61aa|up_2|NZ_CP042815.1_2137720_2137903_-,NA|123aa|down_1|NZ_CP042815.1_2144562_2144931_+,NA|95aa|down_3|NZ_CP042815.1_2145758_2146043_+	NA|327aa|up_9|NZ_CP042815.1_2129349_2130330_-	cd03393, PAP2_like_3, PAP2_like_3 proteins	NA|399aa|up_8|NZ_CP042815.1_2130741_2131938_-	pfam13023, HD_3, HD domain	NA|267aa|up_7|NZ_CP042815.1_2131938_2132739_-	NA	NA|563aa|up_6|NZ_CP042815.1_2132796_2134485_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|291aa|up_5|NZ_CP042815.1_2135074_2135947_-	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|327aa|up_4|NZ_CP042815.1_2135959_2136940_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|158aa|up_3|NZ_CP042815.1_2136985_2137459_-	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|61aa|up_2|NZ_CP042815.1_2137720_2137903_-	NA	NA|692aa|up_1|NZ_CP042815.1_2139677_2141753_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|176aa|up_0|NZ_CP042815.1_2142126_2142654_+	pfam14343, PrcB_C, PrcB C-terminal	NA|154aa|down_0|NZ_CP042815.1_2144051_2144513_+	PRK06654, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|123aa|down_1|NZ_CP042815.1_2144562_2144931_+	NA	NA|220aa|down_2|NZ_CP042815.1_2144923_2145583_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|95aa|down_3|NZ_CP042815.1_2145758_2146043_+	NA	NA|161aa|down_4|NZ_CP042815.1_2146373_2146856_-	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|398aa|down_5|NZ_CP042815.1_2146852_2148046_-	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|654aa|down_6|NZ_CP042815.1_2148042_2150004_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|down_7|NZ_CP042815.1_2150112_2151831_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|down_8|NZ_CP042815.1_2153026_2153734_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|down_9|NZ_CP042815.1_2154528_2155821_-	PRK08637, PRK08637, hypothetical protein; Provisional
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	8	2162726-2162838	8	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	CTGCGTGGAACCACCGCCGTCCATGGC	27	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA|85aa|down_6|NZ_CP042815.1_2174621_2174876_+	NA|654aa|up_9|NZ_CP042815.1_2148042_2150004_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|up_8|NZ_CP042815.1_2150112_2151831_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|up_7|NZ_CP042815.1_2153026_2153734_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|up_6|NZ_CP042815.1_2154528_2155821_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|331aa|up_5|NZ_CP042815.1_2155885_2156878_+	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)	NA|282aa|up_4|NZ_CP042815.1_2156840_2157686_-	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins	NA|135aa|up_3|NZ_CP042815.1_2157678_2158083_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|110aa|up_2|NZ_CP042815.1_2158079_2158409_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|711aa|up_1|NZ_CP042815.1_2158439_2160572_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|447aa|up_0|NZ_CP042815.1_2160575_2161916_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|495aa|down_0|NZ_CP042815.1_2162923_2164408_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|917aa|down_1|NZ_CP042815.1_2164817_2167568_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|592aa|down_2|NZ_CP042815.1_2168016_2169792_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|397aa|down_3|NZ_CP042815.1_2170445_2171636_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|400aa|down_4|NZ_CP042815.1_2171765_2172965_+	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|400aa|down_5|NZ_CP042815.1_2173114_2174314_-	PRK06234, PRK06234, methionine gamma-lyase; Provisional	NA|85aa|down_6|NZ_CP042815.1_2174621_2174876_+	NA	NA|1203aa|down_7|NZ_CP042815.1_2174956_2178565_-	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|341aa|down_8|NZ_CP042815.1_2179746_2180769_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|515aa|down_9|NZ_CP042815.1_2181687_2183232_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	9	2280876-2281027	9	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AAACTCGTTGGCGAACCATAGGTAAAAATTCTAAGGGTTCGCCCGTGC	48	1	7	2280924-2280979|2280924-2280979|2280924-2280979|2280924-2280979|2280924-2280979|2280924-2280979|2280924-2280979	NZ_CP042815.1_1661463-1661408|NZ_CP042815.1_1661567-1661512|NZ_CP042815.1_2729050-2729105|NZ_CP042815.1_443603-443548|NZ_CP042815.1_1141414-1141359|NZ_CP042815.1_1427626-1427681|NZ_CP042815.1_3067564-3067509	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|122aa|up_7|NZ_CP042815.1_2274518_2274884_-,NA|146aa|up_6|NZ_CP042815.1_2274843_2275281_-,NA|135aa|up_5|NZ_CP042815.1_2275283_2275688_-,NA|130aa|up_4|NZ_CP042815.1_2275952_2276342_+,NA|126aa|up_3|NZ_CP042815.1_2276358_2276736_+,NA|294aa|up_1|NZ_CP042815.1_2277228_2278110_-,NA|399aa|down_0|NZ_CP042815.1_2281079_2282276_-,NA|559aa|down_5|NZ_CP042815.1_2288013_2289690_-,NA|274aa|down_6|NZ_CP042815.1_2289693_2290515_-,NA|490aa|down_7|NZ_CP042815.1_2290521_2291991_-,NA|609aa|down_8|NZ_CP042815.1_2291987_2293814_-,NA|269aa|down_9|NZ_CP042815.1_2293834_2294641_-	NA|357aa|up_9|NZ_CP042815.1_2272829_2273900_+	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|179aa|up_8|NZ_CP042815.1_2273907_2274444_+	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|122aa|up_7|NZ_CP042815.1_2274518_2274884_-	NA	NA|146aa|up_6|NZ_CP042815.1_2274843_2275281_-	NA	NA|135aa|up_5|NZ_CP042815.1_2275283_2275688_-	NA	NA|130aa|up_4|NZ_CP042815.1_2275952_2276342_+	NA	NA|126aa|up_3|NZ_CP042815.1_2276358_2276736_+	NA	NA|159aa|up_2|NZ_CP042815.1_2276714_2277191_+	COG1952, SecB, Preprotein translocase subunit SecB [Intracellular trafficking and secretion]	NA|294aa|up_1|NZ_CP042815.1_2277228_2278110_-	NA	NA|869aa|up_0|NZ_CP042815.1_2278181_2280788_-	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|399aa|down_0|NZ_CP042815.1_2281079_2282276_-	NA	NA|523aa|down_1|NZ_CP042815.1_2282277_2283846_-	pfam18798, LPD3, Large polyvalent protein-associated domain 3	NA|338aa|down_2|NZ_CP042815.1_2283855_2284869_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|638aa|down_3|NZ_CP042815.1_2284893_2286807_-	TIGR02794, Protein_TolA, TolA protein	NA|392aa|down_4|NZ_CP042815.1_2286810_2287986_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|559aa|down_5|NZ_CP042815.1_2288013_2289690_-	NA	NA|274aa|down_6|NZ_CP042815.1_2289693_2290515_-	NA	NA|490aa|down_7|NZ_CP042815.1_2290521_2291991_-	NA	NA|609aa|down_8|NZ_CP042815.1_2291987_2293814_-	NA	NA|269aa|down_9|NZ_CP042815.1_2293834_2294641_-	NA
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	10	2379295-2379370	10	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	CCTCTGGTTTTTTCTCCTCAGCTTT	25	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|61aa|up_6|NZ_CP042815.1_2370718_2370901_-,NA|219aa|up_5|NZ_CP042815.1_2371294_2371951_-,NA|281aa|up_4|NZ_CP042815.1_2372186_2373029_-,NA|602aa|up_3|NZ_CP042815.1_2373137_2374943_-,NA|218aa|down_1|NZ_CP042815.1_2380467_2381121_-,NA|151aa|down_3|NZ_CP042815.1_2384659_2385112_-	NA|232aa|up_9|NZ_CP042815.1_2367505_2368201_+	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	NA|158aa|up_8|NZ_CP042815.1_2368200_2368674_+	pfam02542, YgbB, YgbB family	NA|454aa|up_7|NZ_CP042815.1_2368773_2370135_+	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional	NA|61aa|up_6|NZ_CP042815.1_2370718_2370901_-	NA	NA|219aa|up_5|NZ_CP042815.1_2371294_2371951_-	NA	NA|281aa|up_4|NZ_CP042815.1_2372186_2373029_-	NA	NA|602aa|up_3|NZ_CP042815.1_2373137_2374943_-	NA	NA|102aa|up_2|NZ_CP042815.1_2375347_2375653_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|379aa|up_1|NZ_CP042815.1_2376361_2377498_-	sd00036, LRR_3, leucine-rich repeats	NA|276aa|up_0|NZ_CP042815.1_2377660_2378488_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|107aa|down_0|NZ_CP042815.1_2379639_2379960_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|218aa|down_1|NZ_CP042815.1_2380467_2381121_-	NA	NA|704aa|down_2|NZ_CP042815.1_2381696_2383808_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|151aa|down_3|NZ_CP042815.1_2384659_2385112_-	NA	NA|746aa|down_4|NZ_CP042815.1_2386032_2388270_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|405aa|down_5|NZ_CP042815.1_2388522_2389737_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|434aa|down_6|NZ_CP042815.1_2389829_2391131_-	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|391aa|down_7|NZ_CP042815.1_2392393_2393566_-	cd16009, PPM, Bacterial phosphopentomutase	NA|223aa|down_8|NZ_CP042815.1_2393594_2394263_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|122aa|down_9|NZ_CP042815.1_2394545_2394911_+	pfam01668, SmpB, SmpB protein
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	11	2621166-2621313	11	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTC	48	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA	NA|112aa|up_9|NZ_CP042815.1_2609936_2610272_-	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only]	NA|168aa|up_8|NZ_CP042815.1_2610268_2610772_-	cd00886, MogA_MoaB, MogA_MoaB family	NA|147aa|up_7|NZ_CP042815.1_2610750_2611191_-	PRK14499, PRK14499, cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein	NA|323aa|up_6|NZ_CP042815.1_2611191_2612160_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|159aa|up_5|NZ_CP042815.1_2612140_2612617_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|324aa|up_4|NZ_CP042815.1_2612613_2613585_-	cd03522, MoeA_like, MoeA_like	NA|315aa|up_3|NZ_CP042815.1_2613615_2614560_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|850aa|up_2|NZ_CP042815.1_2614887_2617437_-	TIGR03311, Se_dep_XDH, selenium-dependent xanthine dehydrogenase	NA|459aa|up_1|NZ_CP042815.1_2617522_2618899_-	TIGR03173, pbuX, xanthine permease	NA|441aa|up_0|NZ_CP042815.1_2619465_2620788_-	PRK07203, PRK07203, putative aminohydrolase SsnA	NA|561aa|down_0|NZ_CP042815.1_2621536_2623219_-	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional	NA|401aa|down_1|NZ_CP042815.1_2623240_2624443_-	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional	NA|441aa|down_2|NZ_CP042815.1_2624550_2625873_-	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase	NA|398aa|down_3|NZ_CP042815.1_2625891_2627085_-	TIGR03316, aspartate/ornithine_carbamoyltransferase, knotted carbamoyltransferase YgeW	NA|222aa|down_4|NZ_CP042815.1_2627114_2627780_-	pfam08348, PAS_6, YheO-like PAS domain	NA|470aa|down_5|NZ_CP042815.1_2627908_2629318_-	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|449aa|down_6|NZ_CP042815.1_2629514_2630861_-	pfam13941, MutL, MutL protein	NA|208aa|down_7|NZ_CP042815.1_2630860_2631484_-	pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase	NA|559aa|down_8|NZ_CP042815.1_2631878_2633555_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|298aa|down_9|NZ_CP042815.1_2633556_2634450_-	TIGR02024, FtcD, glutamate formiminotransferase
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	12	3083398-3083575	1	PILER-CR	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	CAGATTGCTCACATTAAAAGAGGTGAGTTTATTCTTATCGCACTTCAGTTCG	52	1	1	3083450-3083466	NZ_CP042815.1_3083576-3083592	NA	2	2	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|115aa|up_0|NZ_CP042815.1_3082596_3082941_+,NA|94aa|down_0|NZ_CP042815.1_3084605_3084887_-,NA|113aa|down_6|NZ_CP042815.1_3099831_3100170_-,NA|69aa|down_8|NZ_CP042815.1_3101745_3101952_-	NA|202aa|up_9|NZ_CP042815.1_3068096_3068702_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|373aa|up_8|NZ_CP042815.1_3068682_3069801_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|144aa|up_7|NZ_CP042815.1_3070301_3070733_-	TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain	NA|526aa|up_6|NZ_CP042815.1_3070925_3072503_-	PRK14095, pgi, glucose-6-phosphate isomerase; Provisional	NA|1010aa|up_5|NZ_CP042815.1_3074221_3077251_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|215aa|up_4|NZ_CP042815.1_3077278_3077923_-	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|419aa|up_3|NZ_CP042815.1_3077961_3079218_-	cd17262, RMtype1_S_Aco12261I-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Aminobacterium colombiense DSM 12261 S subunit (S	NA|340aa|up_2|NZ_CP042815.1_3079520_3080540_-	pfam13310, Virulence_RhuM, Virulence protein RhuM family	NA|527aa|up_1|NZ_CP042815.1_3080532_3082113_-	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|115aa|up_0|NZ_CP042815.1_3082596_3082941_+	NA	NA|94aa|down_0|NZ_CP042815.1_3084605_3084887_-	NA	NA|360aa|down_1|NZ_CP042815.1_3085058_3086138_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|397aa|down_2|NZ_CP042815.1_3086134_3087325_-	pfam13679, Methyltransf_32, Methyltransferase domain	NA|1041aa|down_3|NZ_CP042815.1_3087600_3090723_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|265aa|down_4|NZ_CP042815.1_3091006_3091801_-	pfam02673, BacA, Bacitracin resistance protein BacA	NA|422aa|down_5|NZ_CP042815.1_3092538_3093804_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|113aa|down_6|NZ_CP042815.1_3099831_3100170_-	NA	NA|356aa|down_7|NZ_CP042815.1_3100521_3101589_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|69aa|down_8|NZ_CP042815.1_3101745_3101952_-	NA	NA|345aa|down_9|NZ_CP042815.1_3102211_3103246_+	PLN02721, PLN02721, threonine aldolase
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	13	3209945-3210055	12	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TTTAAAACATCGTTTCTGCTTGGAAC	26	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|168aa|up_9|NZ_CP042815.1_3194959_3195463_-,NA|241aa|up_7|NZ_CP042815.1_3196993_3197716_-,NA|60aa|up_1|NZ_CP042815.1_3208152_3208332_-,NA|86aa|down_3|NZ_CP042815.1_3218516_3218774_+,NA|552aa|down_4|NZ_CP042815.1_3218809_3220465_-,NA|80aa|down_9|NZ_CP042815.1_3227641_3227881_-	NA|168aa|up_9|NZ_CP042815.1_3194959_3195463_-	NA	NA|396aa|up_8|NZ_CP042815.1_3195788_3196976_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|241aa|up_7|NZ_CP042815.1_3196993_3197716_-	NA	NA|611aa|up_6|NZ_CP042815.1_3199684_3201517_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|392aa|up_5|NZ_CP042815.1_3201867_3203043_-	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|612aa|up_4|NZ_CP042815.1_3203848_3205684_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|251aa|up_3|NZ_CP042815.1_3205742_3206495_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|421aa|up_2|NZ_CP042815.1_3206575_3207838_-	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase	NA|60aa|up_1|NZ_CP042815.1_3208152_3208332_-	NA	NA|413aa|up_0|NZ_CP042815.1_3208546_3209785_+	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|818aa|down_0|NZ_CP042815.1_3210345_3212799_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|423aa|down_1|NZ_CP042815.1_3213254_3214523_-	PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|943aa|down_2|NZ_CP042815.1_3215397_3218226_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|86aa|down_3|NZ_CP042815.1_3218516_3218774_+	NA	NA|552aa|down_4|NZ_CP042815.1_3218809_3220465_-	NA	NA|756aa|down_5|NZ_CP042815.1_3220634_3222902_-	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|186aa|down_6|NZ_CP042815.1_3223827_3224385_-	COG3945, COG3945, Uncharacterized conserved protein [Function unknown]	NA|614aa|down_7|NZ_CP042815.1_3224441_3226283_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|223aa|down_8|NZ_CP042815.1_3226442_3227111_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|80aa|down_9|NZ_CP042815.1_3227641_3227881_-	NA
GCF_008152825.1_ASM815282v1	NZ_CP042815	Treponema phagedenis strain S2.3 chromosome, complete genome	14	3295892-3296173	2	PILER-CR	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	ACGGACGCCCGTGGTTCCAAACAGCAACGATGTTTTAGAGCAAAACTATTTGCAAAGCTT	60	2	3	3295952-3296002|3296063-3296113|3296063-3296113	NZ_CP042815.1_658400-658450|NZ_CP042815.1_658400-658450|NZ_CP042815.1_1551785-1551735	NA	2	2	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|73aa|up_0|NZ_CP042815.1_3295406_3295625_+,NA|594aa|down_0|NZ_CP042815.1_3296334_3298116_+,NA|61aa|down_2|NZ_CP042815.1_3300254_3300437_+,NA|336aa|down_7|NZ_CP042815.1_3307489_3308497_-,NA|226aa|down_8|NZ_CP042815.1_3308508_3309186_-	NA|281aa|up_9|NZ_CP042815.1_3285712_3286555_-	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase	NA|168aa|up_8|NZ_CP042815.1_3286551_3287055_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|687aa|up_7|NZ_CP042815.1_3287008_3289069_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|388aa|up_6|NZ_CP042815.1_3289143_3290307_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|206aa|up_5|NZ_CP042815.1_3291023_3291641_+	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|185aa|up_4|NZ_CP042815.1_3291646_3292201_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|233aa|up_3|NZ_CP042815.1_3292197_3292896_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|536aa|up_2|NZ_CP042815.1_3292889_3294497_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|244aa|up_1|NZ_CP042815.1_3294637_3295369_+	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|73aa|up_0|NZ_CP042815.1_3295406_3295625_+	NA	NA|594aa|down_0|NZ_CP042815.1_3296334_3298116_+	NA	NA|617aa|down_1|NZ_CP042815.1_3298134_3299985_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|61aa|down_2|NZ_CP042815.1_3300254_3300437_+	NA	NA|134aa|down_3|NZ_CP042815.1_3300720_3301122_-	TIGR02364, dha_pts, dihydroxyacetone kinase, phosphotransfer subunit	NA|205aa|down_4|NZ_CP042815.1_3301131_3301746_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|331aa|down_5|NZ_CP042815.1_3301766_3302759_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|733aa|down_6|NZ_CP042815.1_3305298_3307497_-	PRK13341, PRK13341, AAA family ATPase	NA|336aa|down_7|NZ_CP042815.1_3307489_3308497_-	NA	NA|226aa|down_8|NZ_CP042815.1_3308508_3309186_-	NA	NA|294aa|down_9|NZ_CP042815.1_3309352_3310234_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
