assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	1	944262-944402	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|357aa|down_1|NZ_CP043195.1_946856_947927_-	NA|184aa|up_9|NZ_CP043195.1_933983_934535_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP043195.1_934539_935784_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_7|NZ_CP043195.1_936182_937148_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_6|NZ_CP043195.1_937430_938417_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_5|NZ_CP043195.1_938495_939188_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_4|NZ_CP043195.1_939264_939768_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_3|NZ_CP043195.1_939852_940989_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_2|NZ_CP043195.1_941272_941587_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_1|NZ_CP043195.1_941583_942000_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP043195.1_942044_944063_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP043195.1_944488_946840_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP043195.1_946856_947927_-	NA	NA|478aa|down_2|NZ_CP043195.1_948060_949494_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP043195.1_949556_950006_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP043195.1_950002_953095_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP043195.1_953278_954262_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP043195.1_954480_954813_+	PRK10089, PRK10089, chaperone CsaA	NA|497aa|down_7|NZ_CP043195.1_954854_956345_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP043195.1_956651_958172_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP043195.1_958325_958949_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	2	1271320-1271713	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP043195.1_1270029_1270170_-,NA	NA|434aa|up_9|NZ_CP043195.1_1260726_1262028_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP043195.1_1262075_1264310_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP043195.1_1264387_1264636_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP043195.1_1264635_1264971_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP043195.1_1265041_1265833_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP043195.1_1266060_1267698_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP043195.1_1267785_1269084_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP043195.1_1269143_1270016_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP043195.1_1270029_1270170_-	NA	NA|224aa|up_0|NZ_CP043195.1_1270308_1270980_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP043195.1_1272352_1273831_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP043195.1_1273857_1275135_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP043195.1_1275453_1276239_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP043195.1_1276308_1277763_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP043195.1_1277856_1279194_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP043195.1_1279171_1279951_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP043195.1_1279947_1280808_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP043195.1_1280955_1281531_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP043195.1_1281547_1281808_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP043195.1_1281798_1283070_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	3	1297264-1298026	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,12,12	12	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP043195.1_1285627_1287340_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP043195.1_1287414_1288149_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP043195.1_1288507_1291174_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_CP043195.1_1291588_1293097_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP043195.1_1293089_1293572_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP043195.1_1293584_1294676_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP043195.1_1294678_1295353_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP043195.1_1295339_1295939_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP043195.1_1295954_1296872_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP043195.1_1296873_1297158_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP043195.1_1298108_1299146_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP043195.1_1299397_1300306_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP043195.1_1300307_1301735_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP043195.1_1301734_1302340_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP043195.1_1302389_1302713_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP043195.1_1302906_1303218_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP043195.1_1303236_1303947_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP043195.1_1303946_1304426_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP043195.1_1304422_1305472_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP043195.1_1305452_1306214_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	4	1822903-1823020	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP043195.1_1812188_1812374_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP043195.1_1812386_1813286_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP043195.1_1813478_1814669_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP043195.1_1814665_1815925_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP043195.1_1815914_1817543_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP043195.1_1817815_1819174_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP043195.1_1819178_1820255_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP043195.1_1820717_1821368_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP043195.1_1821421_1821676_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP043195.1_1821675_1822806_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP043195.1_1823039_1825325_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP043195.1_1826020_1829773_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP043195.1_1829900_1830623_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP043195.1_1830769_1833397_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP043195.1_1833545_1835234_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP043195.1_1835230_1835854_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP043195.1_1840392_1842042_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP043195.1_1842046_1842823_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP043195.1_1842896_1844081_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP043195.1_1844111_1845434_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	5	2426170-2426293	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP043195.1_2435189_2435279_+	NA|471aa|up_9|NZ_CP043195.1_2415624_2417037_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP043195.1_2417593_2417803_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP043195.1_2418257_2418884_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP043195.1_2418904_2421007_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP043195.1_2421010_2421658_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP043195.1_2421721_2422390_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP043195.1_2422386_2423172_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP043195.1_2423175_2423988_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP043195.1_2423999_2425604_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP043195.1_2425729_2426035_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP043195.1_2426607_2427864_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP043195.1_2427904_2429278_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP043195.1_2429492_2430134_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP043195.1_2430173_2431322_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP043195.1_2431612_2432824_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP043195.1_2432936_2433869_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP043195.1_2433865_2434891_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP043195.1_2435189_2435279_+	NA	NA|390aa|down_8|NZ_CP043195.1_2435444_2436614_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP043195.1_2436775_2437357_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	6	3104830-3104921	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|60aa|up_7|NZ_CP043195.1_3098989_3099169_-,NA	NA|1321aa|up_9|NZ_CP043195.1_3094170_3098133_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_8|NZ_CP043195.1_3098172_3098811_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|60aa|up_7|NZ_CP043195.1_3098989_3099169_-	NA	NA|364aa|up_6|NZ_CP043195.1_3099098_3100190_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP043195.1_3100189_3100882_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP043195.1_3100893_3101280_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP043195.1_3101287_3102088_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP043195.1_3102097_3102688_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP043195.1_3102698_3103193_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP043195.1_3103213_3104542_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP043195.1_3105344_3105941_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP043195.1_3105961_3106189_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP043195.1_3106226_3107468_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP043195.1_3107760_3109017_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP043195.1_3109277_3110198_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP043195.1_3110197_3110503_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP043195.1_3110654_3111254_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP043195.1_3111250_3113797_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP043195.1_3113796_3114969_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP043195.1_3115098_3115791_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	7	3415625-3415769	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|94aa|up_4|NZ_CP043195.1_3412297_3412579_+,NA|56aa|up_3|NZ_CP043195.1_3412667_3412835_+,NA	NA|227aa|up_9|NZ_CP043195.1_3409924_3410605_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_CP043195.1_3410601_3410784_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_CP043195.1_3410756_3410948_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|74aa|up_6|NZ_CP043195.1_3411339_3411561_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|183aa|up_5|NZ_CP043195.1_3411557_3412106_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|94aa|up_4|NZ_CP043195.1_3412297_3412579_+	NA	NA|56aa|up_3|NZ_CP043195.1_3412667_3412835_+	NA	NA|73aa|up_2|NZ_CP043195.1_3412874_3413093_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP043195.1_3413070_3414141_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP043195.1_3414275_3415559_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP043195.1_3415792_3418054_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP043195.1_3418236_3419670_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP043195.1_3419745_3420798_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP043195.1_3420981_3421935_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP043195.1_3421975_3422971_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP043195.1_3423125_3423944_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP043195.1_3423944_3425003_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP043195.1_3425005_3425695_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP043195.1_3425694_3426468_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP043195.1_3426634_3426784_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	8	3671431-3671527	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP043195.1_3663226_3663919_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP043195.1_3664138_3664681_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP043195.1_3665151_3666018_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP043195.1_3666019_3666232_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP043195.1_3666339_3666861_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP043195.1_3666896_3668282_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP043195.1_3668455_3668950_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP043195.1_3668952_3669675_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP043195.1_3669792_3670302_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP043195.1_3670298_3671366_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP043195.1_3671560_3672454_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP043195.1_3672450_3673266_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP043195.1_3673276_3674536_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP043195.1_3674545_3676213_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP043195.1_3676529_3677579_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP043195.1_3677600_3678836_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP043195.1_3678846_3679632_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP043195.1_3679859_3681005_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP043195.1_3681026_3682328_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP043195.1_3682384_3683746_-	PRK08044, PRK08044, allantoinase AllB
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	9	3812872-3813016	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP043195.1_3815061_3815145_-	NA|357aa|up_9|NZ_CP043195.1_3798010_3799081_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP043195.1_3799173_3799755_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP043195.1_3799759_3801577_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP043195.1_3801732_3803106_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP043195.1_3803181_3804501_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP043195.1_3804907_3806203_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP043195.1_3806260_3806950_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP043195.1_3807139_3808342_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP043195.1_3808338_3811485_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP043195.1_3811610_3812795_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP043195.1_3813039_3813948_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP043195.1_3814072_3814984_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP043195.1_3815061_3815145_-	NA	NA|95aa|down_3|NZ_CP043195.1_3815630_3815915_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP043195.1_3815986_3816664_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP043195.1_3816921_3817113_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP043195.1_3817162_3817687_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP043195.1_3817869_3818328_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP043195.1_3818447_3819257_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP043195.1_3819273_3820389_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_008124225.1_ASM812422v1	NZ_CP043195	Escherichia coli O16:H48 strain PG20180062 chromosome, complete genome	10	4143793-4143928	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_CP043195.1_4134501_4134879_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP043195.1_4134885_4135728_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP043195.1_4135805_4136285_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP043195.1_4136476_4138339_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP043195.1_4138331_4138862_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP043195.1_4138969_4140301_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP043195.1_4140357_4140645_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP043195.1_4140641_4141928_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP043195.1_4141978_4142920_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP043195.1_4142934_4143705_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP043195.1_4144176_4145691_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP043195.1_4145721_4146864_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP043195.1_4146992_4148210_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP043195.1_4148283_4149837_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP043195.1_4149945_4150731_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP043195.1_4150736_4151327_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP043195.1_4151412_4151808_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP043195.1_4152069_4155291_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP043195.1_4155308_4156457_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP043195.1_4156912_4157734_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
