assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	1	656198-656338	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|357aa|down_1|NZ_CP043183.1_658792_659863_-	NA|184aa|up_9|NZ_CP043183.1_645919_646471_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP043183.1_646475_647720_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_7|NZ_CP043183.1_648118_649084_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_6|NZ_CP043183.1_649366_650353_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_5|NZ_CP043183.1_650431_651124_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_4|NZ_CP043183.1_651200_651704_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_3|NZ_CP043183.1_651788_652925_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_2|NZ_CP043183.1_653208_653523_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_1|NZ_CP043183.1_653519_653936_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP043183.1_653980_655999_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP043183.1_656424_658776_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP043183.1_658792_659863_-	NA	NA|478aa|down_2|NZ_CP043183.1_659996_661430_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP043183.1_661492_661942_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP043183.1_661938_665031_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP043183.1_665214_666198_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP043183.1_666416_666749_+	PRK10089, PRK10089, chaperone CsaA	NA|497aa|down_7|NZ_CP043183.1_666790_668281_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP043183.1_668587_670108_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP043183.1_670261_670885_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	2	983256-983649	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP043183.1_981965_982106_-,NA	NA|434aa|up_9|NZ_CP043183.1_972662_973964_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP043183.1_974011_976246_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP043183.1_976323_976572_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP043183.1_976571_976907_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP043183.1_976977_977769_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP043183.1_977996_979634_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP043183.1_979721_981020_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP043183.1_981079_981952_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP043183.1_981965_982106_-	NA	NA|224aa|up_0|NZ_CP043183.1_982244_982916_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP043183.1_984288_985767_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP043183.1_985793_987071_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP043183.1_987389_988175_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP043183.1_988244_989699_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP043183.1_989792_991130_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP043183.1_991107_991887_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP043183.1_991883_992744_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP043183.1_992891_993467_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP043183.1_993483_993744_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP043183.1_993734_995006_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	3	1009200-1009962	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,12,12	12	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP043183.1_997563_999276_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP043183.1_999350_1000085_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP043183.1_1000443_1003110_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_CP043183.1_1003524_1005033_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP043183.1_1005025_1005508_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP043183.1_1005520_1006612_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP043183.1_1006614_1007289_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP043183.1_1007275_1007875_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP043183.1_1007890_1008808_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP043183.1_1008809_1009094_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP043183.1_1010044_1011082_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP043183.1_1011333_1012242_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP043183.1_1012243_1013671_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP043183.1_1013670_1014276_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP043183.1_1014325_1014649_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP043183.1_1014842_1015154_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP043183.1_1015172_1015883_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP043183.1_1015882_1016362_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP043183.1_1016358_1017408_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP043183.1_1017388_1018150_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	4	1534843-1534960	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP043183.1_1524128_1524314_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP043183.1_1524326_1525226_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP043183.1_1525418_1526609_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP043183.1_1526605_1527865_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP043183.1_1527854_1529483_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP043183.1_1529755_1531114_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP043183.1_1531118_1532195_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP043183.1_1532657_1533308_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP043183.1_1533361_1533616_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP043183.1_1533615_1534746_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP043183.1_1534979_1537265_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP043183.1_1537960_1541713_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP043183.1_1541840_1542563_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP043183.1_1542709_1545337_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP043183.1_1545485_1547174_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP043183.1_1547170_1547794_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP043183.1_1552332_1553982_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP043183.1_1553986_1554763_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP043183.1_1554836_1556021_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP043183.1_1556051_1557374_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	5	2138110-2138233	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP043183.1_2147129_2147219_+	NA|471aa|up_9|NZ_CP043183.1_2127564_2128977_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP043183.1_2129533_2129743_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP043183.1_2130197_2130824_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP043183.1_2130844_2132947_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP043183.1_2132950_2133598_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP043183.1_2133661_2134330_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP043183.1_2134326_2135112_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP043183.1_2135115_2135928_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP043183.1_2135939_2137544_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP043183.1_2137669_2137975_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP043183.1_2138547_2139804_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP043183.1_2139844_2141218_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP043183.1_2141432_2142074_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP043183.1_2142113_2143262_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP043183.1_2143552_2144764_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP043183.1_2144876_2145809_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP043183.1_2145805_2146831_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP043183.1_2147129_2147219_+	NA	NA|390aa|down_8|NZ_CP043183.1_2147384_2148554_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP043183.1_2148715_2149297_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	6	2816771-2816862	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|60aa|up_7|NZ_CP043183.1_2810930_2811110_-,NA	NA|1321aa|up_9|NZ_CP043183.1_2806111_2810074_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_8|NZ_CP043183.1_2810113_2810752_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|60aa|up_7|NZ_CP043183.1_2810930_2811110_-	NA	NA|364aa|up_6|NZ_CP043183.1_2811039_2812131_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP043183.1_2812130_2812823_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP043183.1_2812834_2813221_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP043183.1_2813228_2814029_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP043183.1_2814038_2814629_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP043183.1_2814639_2815134_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP043183.1_2815154_2816483_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP043183.1_2817285_2817882_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP043183.1_2817902_2818130_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP043183.1_2818167_2819409_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP043183.1_2819701_2820958_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP043183.1_2821218_2822139_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP043183.1_2822138_2822444_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP043183.1_2822595_2823195_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP043183.1_2823191_2825738_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP043183.1_2825737_2826910_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP043183.1_2827039_2827732_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	7	3127565-3127709	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA|94aa|up_4|NZ_CP043183.1_3124237_3124519_+,NA|56aa|up_3|NZ_CP043183.1_3124607_3124775_+,NA	NA|227aa|up_9|NZ_CP043183.1_3121864_3122545_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_CP043183.1_3122541_3122724_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_CP043183.1_3122696_3122888_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|74aa|up_6|NZ_CP043183.1_3123279_3123501_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|183aa|up_5|NZ_CP043183.1_3123497_3124046_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|94aa|up_4|NZ_CP043183.1_3124237_3124519_+	NA	NA|56aa|up_3|NZ_CP043183.1_3124607_3124775_+	NA	NA|73aa|up_2|NZ_CP043183.1_3124814_3125033_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP043183.1_3125010_3126081_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP043183.1_3126215_3127499_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP043183.1_3127732_3129994_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP043183.1_3130176_3131610_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP043183.1_3131685_3132738_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP043183.1_3132921_3133875_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP043183.1_3133915_3134911_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP043183.1_3135065_3135884_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP043183.1_3135884_3136943_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP043183.1_3136945_3137635_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP043183.1_3137634_3138408_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP043183.1_3138574_3138724_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	8	3383371-3383467	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP043183.1_3375166_3375859_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP043183.1_3376078_3376621_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP043183.1_3377091_3377958_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP043183.1_3377959_3378172_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP043183.1_3378279_3378801_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP043183.1_3378836_3380222_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP043183.1_3380395_3380890_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP043183.1_3380892_3381615_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP043183.1_3381732_3382242_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP043183.1_3382238_3383306_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP043183.1_3383500_3384394_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP043183.1_3384390_3385206_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP043183.1_3385216_3386476_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP043183.1_3386485_3388153_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP043183.1_3388469_3389519_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP043183.1_3389540_3390776_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP043183.1_3390786_3391572_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP043183.1_3391799_3392945_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP043183.1_3392966_3394268_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP043183.1_3394324_3395686_-	PRK08044, PRK08044, allantoinase AllB
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	9	3524812-3524956	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP043183.1_3527001_3527085_-	NA|357aa|up_9|NZ_CP043183.1_3509950_3511021_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP043183.1_3511113_3511695_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP043183.1_3511699_3513517_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP043183.1_3513672_3515046_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP043183.1_3515121_3516441_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP043183.1_3516847_3518143_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP043183.1_3518200_3518890_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP043183.1_3519079_3520282_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP043183.1_3520278_3523425_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP043183.1_3523550_3524735_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP043183.1_3524979_3525888_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP043183.1_3526012_3526924_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP043183.1_3527001_3527085_-	NA	NA|95aa|down_3|NZ_CP043183.1_3527570_3527855_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP043183.1_3527926_3528604_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP043183.1_3528861_3529053_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP043183.1_3529102_3529627_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP043183.1_3529809_3530268_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP043183.1_3530387_3531197_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP043183.1_3531213_3532329_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_008124125.1_ASM812412v1	NZ_CP043183	Escherichia coli O16:H48 strain PG20180172 chromosome, complete genome	10	3855733-3855868	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_CP043183.1_3846441_3846819_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP043183.1_3846825_3847668_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP043183.1_3847745_3848225_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP043183.1_3848416_3850279_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP043183.1_3850271_3850802_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP043183.1_3850909_3852241_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP043183.1_3852297_3852585_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP043183.1_3852581_3853868_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP043183.1_3853918_3854860_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP043183.1_3854874_3855645_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP043183.1_3856116_3857631_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP043183.1_3857661_3858804_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP043183.1_3858932_3860150_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP043183.1_3860223_3861777_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP043183.1_3861885_3862671_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP043183.1_3862676_3863267_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP043183.1_3863352_3863748_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP043183.1_3864009_3867231_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP043183.1_3867248_3868397_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP043183.1_3868852_3869674_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
