The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP043009	Citrobacter portucalensis strain WCHCP085039 chromosome, complete genome	4813365	1773826	1782245	4813365	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
WP_148361753.1|1773826_1774774_+	ATP-binding cassette domain-containing protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	26.1	1.0e-07
WP_128316781.1|1774757_1775489_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003027354.1|1775469_1775577_-	protein YohO	NA	NA	NA	NA	NA
WP_048224569.1|1775628_1776360_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	93.0	2.3e-105
WP_003834458.1|1776585_1778271_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.6	6.7e-281
WP_003840155.1|1778267_1778987_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_003834454.1|1779033_1779504_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	77.4	1.8e-63
WP_032943976.1|1779547_1780006_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	69.9	3.2e-52
WP_003834451.1|1780211_1782245_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	5.2e-54
>prophage 2
NZ_CP043009	Citrobacter portucalensis strain WCHCP085039 chromosome, complete genome	4813365	1833322	1842891	4813365	tRNA,protease	Bacillus_phage(28.57%)	8	NA	NA
WP_048215946.1|1833322_1835269_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.8	1.4e-40
WP_003036813.1|1835343_1835568_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.7	3.6e-17
WP_003036810.1|1835891_1836212_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	3.5e-13
WP_003036804.1|1836242_1838519_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.1	1.4e-164
WP_003834280.1|1838787_1840149_-|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	92.9	1.8e-204
WP_003834279.1|1840308_1840641_-	YegP family protein	NA	NA	NA	NA	NA
WP_121367814.1|1840768_1841491_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	32.7	7.1e-30
WP_003834277.1|1841487_1842891_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	29.2	2.3e-32
>prophage 3
NZ_CP043009	Citrobacter portucalensis strain WCHCP085039 chromosome, complete genome	4813365	1884748	1891049	4813365		Enterobacteria_phage(66.67%)	6	NA	NA
WP_148361782.1|1884748_1886143_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	34.6	6.1e-22
WP_003841818.1|1886308_1887202_+	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	39.9	4.3e-45
WP_148361783.1|1887574_1888660_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.4	7.4e-100
WP_148361784.1|1888659_1889559_+	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	35.3	1.1e-29
WP_148361785.1|1889609_1890488_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	63.8	7.3e-106
WP_148361786.1|1890491_1891049_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	55.6	6.8e-49
>prophage 4
NZ_CP043009	Citrobacter portucalensis strain WCHCP085039 chromosome, complete genome	4813365	2721408	2731416	4813365	tRNA	Brazilian_cedratvirus(28.57%)	10	NA	NA
WP_003832594.1|2721408_2722188_+	heme ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	27.8	3.2e-12
WP_148362061.1|2722184_2723627_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	35.3	1.0e-51
WP_063941497.1|2723688_2724402_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003836644.1|2724720_2725185_-	lipoprotein nlpC	NA	A0A1V0DZX6	Clostridioides_phage	38.2	3.5e-14
WP_003030567.1|2725262_2726012_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	30.3	9.3e-09
WP_148362062.1|2726011_2726563_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_148362063.1|2726623_2727604_-	vitamin B12 ABC transporter permease BtuC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	25.1	1.5e-14
WP_003030571.1|2727725_2728025_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
WP_079933930.1|2728029_2730417_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003832580.1|2730432_2731416_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.4e-33
>prophage 5
NZ_CP043009	Citrobacter portucalensis strain WCHCP085039 chromosome, complete genome	4813365	2899255	2904293	4813365		uncultured_Caudovirales_phage(83.33%)	6	NA	NA
WP_148362116.1|2899255_2900212_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.1	1.4e-17
WP_148362117.1|2900212_2900980_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.6	5.4e-12
WP_048211256.1|2901416_2902115_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.5	5.0e-89
WP_047041444.1|2902200_2902521_+	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	43.8	7.7e-21
WP_148362118.1|2902565_2903855_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	70.2	4.9e-167
WP_148362119.1|2903867_2904293_+	glutaredoxin-dependent arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	71.4	5.6e-51
>prophage 6
NZ_CP043009	Citrobacter portucalensis strain WCHCP085039 chromosome, complete genome	4813365	3778352	3788358	4813365	integrase,capsid	Enterobacteria_phage(100.0%)	13	3778057:3778070	3788527:3788540
3778057:3778070	attL	CGATAATAGGAGTC	NA	NA	NA	NA
WP_148362401.1|3778352_3780686_-	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	83.5	0.0e+00
WP_148362402.1|3780697_3781018_-	DUF5375 family protein	NA	NA	NA	NA	NA
WP_148362696.1|3781014_3781242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148362403.1|3781346_3781796_-	hypothetical protein	NA	Q7M298	Enterobacteria_phage	66.4	5.3e-44
WP_148362404.1|3781788_3782088_-	Derepression protein	NA	Q7M2A0	Enterobacteria_phage	65.7	1.7e-30
WP_148362405.1|3782080_3782680_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.1	6.7e-42
WP_101701361.1|3782676_3782943_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	63.6	2.3e-23
WP_114675941.1|3783495_3784299_+|capsid	capsid protein	capsid	Q7M2A2	Enterobacteria_phage	25.8	8.7e-13
WP_000984214.1|3784295_3784538_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	58.0	1.4e-19
WP_148362406.1|3784554_3785130_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	50.8	5.6e-38
WP_148362407.1|3785173_3785359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148362408.1|3785399_3787166_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_148362409.1|3787176_3788358_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	61.1	9.5e-141
3788527:3788540	attR	CGATAATAGGAGTC	NA	NA	NA	NA
>prophage 1
NZ_CP043007	Citrobacter portucalensis strain WCHCP085039 plasmid p1_085039, complete sequence	62434	2263	29608	62434	integrase,transposase	Escherichia_phage(35.71%)	29	NA	NA
WP_000331736.1|2263_2989_+	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	42.2	4.4e-40
WP_000750474.1|3088_3499_+	hydroxyisourate hydrolase	NA	NA	NA	NA	NA
WP_000208727.1|3601_4561_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA	NA
WP_000633445.1|4706_5795_+	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	61.7	9.7e-124
WP_001067852.1|5857_6562_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	4.0e-139
WP_000557466.1|6825_7899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000534857.1|8433_8673_+	type II toxin-antitoxin system antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	2.0e-18
WP_000323025.1|8672_8960_+	type II toxin-antitoxin system mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
WP_004192759.1|8843_9191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001531258.1|9263_10046_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	96.5	6.1e-136
WP_000627495.1|10042_11065_-|transposase	IS21-like element ISSen3 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	85.3	1.9e-174
WP_085950818.1|13280_14401_-|transposase	IS3-like element ISSen4 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	1.7e-51
WP_004193081.1|14413_14782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600827.1|14829_15807_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K0N6I5	Gordonia_phage	34.9	1.1e-06
WP_000480968.1|17755_18592_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001082319.1|18591_19395_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
WP_000134999.1|19808_20450_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_029404405.1|21410_21947_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	85.2	4.9e-44
WP_000454193.1|22072_22423_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_000845054.1|22625_23639_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	6.1e-72
WP_001083725.1|23783_24281_+	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	7.5e-23
WP_001336345.1|24392_24683_+	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
WP_001206356.1|24688_25480_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
WP_000679427.1|25643_25991_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_000259031.1|25984_26824_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
WP_001993321.1|26753_26933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000376623.1|26951_27452_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001381192.1|27420_28413_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_001067855.1|28903_29608_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
