assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008065435.1_ASM806543v1	NZ_CP042298	Escherichia coli strain RM9088 chromosome, complete genome	1	280547-280688	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	41	1	1	280588-280647	NZ_CP042298.1_279846-279905	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|116aa|up_9|NZ_CP042298.1_269684_270032_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|524aa|up_8|NZ_CP042298.1_270051_271623_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|256aa|up_7|NZ_CP042298.1_272398_273166_-	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|158aa|up_6|NZ_CP042298.1_273319_273793_+	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|815aa|up_5|NZ_CP042298.1_273835_276280_-	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|193aa|up_4|NZ_CP042298.1_276519_277098_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_3|NZ_CP042298.1_277303_278071_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_2|NZ_CP042298.1_278041_278782_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|253aa|up_1|NZ_CP042298.1_279073_279832_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|166aa|up_0|NZ_CP042298.1_280007_280505_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|698aa|down_0|NZ_CP042298.1_280822_282916_-	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|380aa|down_1|NZ_CP042298.1_282899_284039_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|261aa|down_2|NZ_CP042298.1_284028_284811_-	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]	NA|91aa|down_3|NZ_CP042298.1_284812_285085_-	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|251aa|down_4|NZ_CP042298.1_285087_285840_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|124aa|down_5|NZ_CP042298.1_285836_286208_-	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN	NA|284aa|down_6|NZ_CP042298.1_286200_287052_-	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term	NA|329aa|down_7|NZ_CP042298.1_287439_288426_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|114aa|down_8|NZ_CP042298.1_288440_288782_+	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|549aa|down_9|NZ_CP042298.1_288786_290433_+	PRK07193, fliF, flagellar MS-ring protein; Reviewed
GCF_008065435.1_ASM806543v1	NZ_CP042298	Escherichia coli strain RM9088 chromosome, complete genome	2	486775-486919	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|28aa|up_2|NZ_CP042298.1_484645_484729_+,NA	NA|372aa|up_9|NZ_CP042298.1_479400_480516_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP042298.1_480532_481342_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|155aa|up_7|NZ_CP042298.1_481461_481926_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP042298.1_482102_482627_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP042298.1_482676_482868_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP042298.1_483125_483803_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP042298.1_483874_484159_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP042298.1_484645_484729_+	NA	NA|304aa|up_1|NZ_CP042298.1_484806_485718_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP042298.1_485842_486751_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP042298.1_486995_488180_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1048aa|down_1|NZ_CP042298.1_488305_491449_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP042298.1_491445_492648_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP042298.1_492837_493527_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP042298.1_493584_494880_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP042298.1_495286_496606_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP042298.1_496681_498055_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP042298.1_498210_500028_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP042298.1_500032_500614_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP042298.1_500706_501777_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_008065435.1_ASM806543v1	NZ_CP042298	Escherichia coli strain RM9088 chromosome, complete genome	3	998132-998280	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT	29	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|551aa|up_9|NZ_CP042298.1_984542_986195_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP042298.1_986338_987238_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP042298.1_987732_988428_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP042298.1_988852_990511_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP042298.1_990507_991464_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP042298.1_991614_992730_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP042298.1_992726_994673_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP042298.1_994745_994970_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP042298.1_995292_995613_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP042298.1_995643_997920_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP042298.1_998840_999059_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP042298.1_999343_1000048_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP042298.1_1000089_1001811_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP042298.1_1001811_1003578_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP042298.1_1003700_1004666_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP042298.1_1005210_1005705_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1361aa|down_6|NZ_CP042298.1_1005839_1009922_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP042298.1_1010076_1010688_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP042298.1_1010698_1012042_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP042298.1_1012132_1013425_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_008065435.1_ASM806543v1	NZ_CP042298	Escherichia coli strain RM9088 chromosome, complete genome	4	2224059-2224200	4	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	AGCGTCGCATCAGGCACACTGCCAATGTCGGATGCGGTGCGAGCG	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|20aa|down_2|NZ_CP042298.1_2226763_2226823_-	NA|214aa|up_9|NZ_CP042298.1_2211883_2212525_-	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|604aa|up_8|NZ_CP042298.1_2212561_2214373_-	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|492aa|up_7|NZ_CP042298.1_2214607_2216083_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|290aa|up_6|NZ_CP042298.1_2216420_2217290_+	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|481aa|up_5|NZ_CP042298.1_2217417_2218860_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|324aa|up_4|NZ_CP042298.1_2218990_2219962_-	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|441aa|up_3|NZ_CP042298.1_2220081_2221404_-	PRK11649, PRK11649, putative peptidase; Provisional	NA|311aa|up_2|NZ_CP042298.1_2221419_2222352_-	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|252aa|up_1|NZ_CP042298.1_2222430_2223186_+	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|262aa|up_0|NZ_CP042298.1_2223182_2223968_+	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|337aa|down_0|NZ_CP042298.1_2224211_2225222_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|204aa|down_1|NZ_CP042298.1_2225230_2225842_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|20aa|down_2|NZ_CP042298.1_2226763_2226823_-	NA	NA|201aa|down_3|NZ_CP042298.1_2226893_2227496_+	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|174aa|down_4|NZ_CP042298.1_2227497_2228019_-	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|247aa|down_5|NZ_CP042298.1_2228053_2228794_-	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|151aa|down_6|NZ_CP042298.1_2228822_2229275_-	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|591aa|down_7|NZ_CP042298.1_2229392_2231165_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|189aa|down_8|NZ_CP042298.1_2231474_2232041_+	PRK11440, PRK11440, putative hydrolase; Provisional	NA|273aa|down_9|NZ_CP042298.1_2232037_2232856_+	PRK10302, PRK10302, hypothetical protein; Provisional
GCF_008065435.1_ASM806543v1	NZ_CP042298	Escherichia coli strain RM9088 chromosome, complete genome	5	4295877-4296332	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|47aa|up_1|NZ_CP042298.1_4294586_4294727_-,NA	NA|919aa|up_9|NZ_CP042298.1_4282471_4285228_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP042298.1_4285284_4286586_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP042298.1_4286633_4288868_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP042298.1_4288945_4289194_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|264aa|up_5|NZ_CP042298.1_4289598_4290390_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP042298.1_4290617_4292255_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP042298.1_4292342_4293641_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP042298.1_4293700_4294573_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP042298.1_4294586_4294727_-	NA	NA|224aa|up_0|NZ_CP042298.1_4294865_4295537_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP042298.1_4296970_4298449_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP042298.1_4298475_4299753_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP042298.1_4300070_4300856_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP042298.1_4300925_4302380_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP042298.1_4302473_4303811_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP042298.1_4303788_4304568_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP042298.1_4304564_4305425_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP042298.1_4305572_4306148_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP042298.1_4306164_4306425_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP042298.1_4306415_4307687_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_008065435.1_ASM806543v1	NZ_CP042298	Escherichia coli strain RM9088 chromosome, complete genome	6	4322030-4323217	2,6,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,19	19	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|245aa|up_9|NZ_CP042298.1_4312031_4312766_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP042298.1_4313030_4313183_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP042298.1_4313377_4316077_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP042298.1_4316174_4317737_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP042298.1_4317733_4318270_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP042298.1_4318281_4319337_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP042298.1_4319347_4320094_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP042298.1_4320075_4320726_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP042298.1_4320722_4321640_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP042298.1_4321639_4321933_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP042298.1_4323298_4324336_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP042298.1_4324587_4325496_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP042298.1_4325497_4326925_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP042298.1_4326924_4327530_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP042298.1_4327579_4327903_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP042298.1_4328096_4328408_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP042298.1_4328426_4329137_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP042298.1_4329136_4329616_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP042298.1_4329612_4330662_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP042298.1_4330642_4331404_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_008065435.1_ASM806543v1	NZ_CP042298	Escherichia coli strain RM9088 chromosome, complete genome	7	4417350-4417447	7	CRISPRCasFinder	no	csa3	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-A	ATGGAATCACGTAATTCATATGA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|40aa|down_1|NZ_CP042298.1_4418942_4419062_+	NA|175aa|up_9|NZ_CP042298.1_4402881_4403406_-	cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily	csa3|100aa|up_8|NZ_CP042298.1_4403415_4403715_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|53aa|up_7|NZ_CP042298.1_4403897_4404056_+	COG0401, COG0401, Uncharacterized homolog of Blt101 [Function unknown]	NA|150aa|up_6|NZ_CP042298.1_4404139_4404589_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|221aa|up_5|NZ_CP042298.1_4404589_4405252_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|up_4|NZ_CP042298.1_4405272_4406673_-	PRK10197, PRK10197, GABA permease	NA|427aa|up_3|NZ_CP042298.1_4406983_4408264_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|483aa|up_2|NZ_CP042298.1_4408277_4409726_-	PRK11241, gabD, NADP-dependent succinate-semialdehyde dehydrogenase I	NA|423aa|up_1|NZ_CP042298.1_4409748_4411017_-	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase	NA|326aa|up_0|NZ_CP042298.1_4411035_4412013_-	PRK02963, PRK02963, carbon starvation induced protein CsiD	NA|73aa|down_0|NZ_CP042298.1_4418569_4418788_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|40aa|down_1|NZ_CP042298.1_4418942_4419062_+	NA	NA|161aa|down_2|NZ_CP042298.1_4424431_4424914_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|159aa|down_3|NZ_CP042298.1_4425045_4425522_+	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin	NA|97aa|down_4|NZ_CP042298.1_4425511_4425802_+	PRK01777, PRK01777, RnfH family protein	NA|114aa|down_5|NZ_CP042298.1_4425863_4426205_-	PRK11548, PRK11548, outer membrane protein assembly factor BamE	NA|554aa|down_6|NZ_CP042298.1_4426353_4428015_-	PRK10869, PRK10869, recombination and repair protein; Provisional	NA|293aa|down_7|NZ_CP042298.1_4428100_4428979_-	PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|198aa|down_8|NZ_CP042298.1_4429101_4429695_+	PRK10325, PRK10325, heat shock protein GrpE; Provisional	NA|429aa|down_9|NZ_CP042298.1_4429749_4431036_-	PRK11573, PRK11573, hypothetical protein; Provisional
