assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008064875.1_ASM806487v1	NZ_CP042942	Escherichia fergusonii strain ATCC 35473 chromosome, complete genome	1	2340272-2340605	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,PD-DExK,csa3,RT,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,cas14j	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAAC,GAGTTCCCCGCGCCAGCGNGGATAAACCG	29,27,29	0	0	NA	NA	I-E:I-E:I-E	3,5,5	5	TypeI-E	c2c9_V-U4,cas3,PD-DExK,csa3,RT,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,cas14j	NA,NA|88aa|down_0|NZ_CP042942.1_2340669_2340933_+	NA|745aa|up_9|NZ_CP042942.1_2328366_2330601_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_CP042942.1_2330678_2330927_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_CP042942.1_2330926_2331262_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_CP042942.1_2331332_2332124_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP042942.1_2332351_2333989_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP042942.1_2334076_2335375_+	PRK00077, eno, enolase; Provisional	NA|383aa|up_3|NZ_CP042942.1_2336332_2337481_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|326aa|up_2|NZ_CP042942.1_2337495_2338473_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP042942.1_2338486_2339089_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP042942.1_2339261_2339933_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|88aa|down_0|NZ_CP042942.1_2340669_2340933_+	NA	NA|122aa|down_1|NZ_CP042942.1_2341293_2341659_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|599aa|down_2|NZ_CP042942.1_2341974_2343771_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP042942.1_2343770_2345483_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP042942.1_2345556_2346291_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_5|NZ_CP042942.1_2346553_2346706_+	pfam01848, HOK_GEF, Hok/gef family	cas3|886aa|down_6|NZ_CP042942.1_2346944_2349602_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_7|NZ_CP042942.1_2349699_2351262_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|down_8|NZ_CP042942.1_2351258_2351798_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_9|NZ_CP042942.1_2351809_2352865_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_008064875.1_ASM806487v1	NZ_CP042942	Escherichia fergusonii strain ATCC 35473 chromosome, complete genome	2	2355561-2357788	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,PD-DExK,csa3,RT,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,cas14j	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,NGTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,30	0	0	NA	NA	I-E:I-E:I-E	2,36,36	36	TypeI-E	c2c9_V-U4,cas3,PD-DExK,csa3,RT,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,cas14j	NA,NA	NA|245aa|up_9|NZ_CP042942.1_2345556_2346291_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP042942.1_2346553_2346706_+	pfam01848, HOK_GEF, Hok/gef family	cas3|886aa|up_7|NZ_CP042942.1_2346944_2349602_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP042942.1_2349699_2351262_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NZ_CP042942.1_2351258_2351798_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP042942.1_2351809_2352865_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP042942.1_2352875_2353622_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP042942.1_2353603_2354254_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP042942.1_2354250_2355174_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP042942.1_2355170_2355464_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP042942.1_2357807_2358845_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP042942.1_2359096_2360005_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP042942.1_2360006_2361434_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP042942.1_2361433_2362039_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP042942.1_2362088_2362412_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP042942.1_2362586_2362898_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP042942.1_2362916_2363627_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP042942.1_2363626_2364106_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP042942.1_2364102_2365152_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP042942.1_2365132_2365894_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_008064875.1_ASM806487v1	NZ_CP042942	Escherichia fergusonii strain ATCC 35473 chromosome, complete genome	3	3437588-3437711	3	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,PD-DExK,csa3,RT,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,cas14j	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,PD-DExK,csa3,RT,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,cas14j	NA,NA	NA|496aa|up_9|NZ_CP042942.1_3426319_3427807_+	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional	NA|249aa|up_8|NZ_CP042942.1_3427816_3428563_+	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed	NA|424aa|up_7|NZ_CP042942.1_3428537_3429809_+	PRK10948, PRK10948, Fe-S cluster assembly protein SufD	NA|407aa|up_6|NZ_CP042942.1_3429805_3431026_+	PRK09295, PRK09295, cysteine desulfurase SufS	NA|139aa|up_5|NZ_CP042942.1_3431038_3431455_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|334aa|up_4|NZ_CP042942.1_3431603_3432605_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_3|NZ_CP042942.1_3432657_3432894_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_2|NZ_CP042942.1_3433202_3434615_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_1|NZ_CP042942.1_3435128_3435338_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|102aa|up_0|NZ_CP042942.1_3437146_3437452_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|458aa|down_0|NZ_CP042942.1_3437869_3439243_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|216aa|down_1|NZ_CP042942.1_3439460_3440108_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_2|NZ_CP042942.1_3440148_3441297_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|402aa|down_3|NZ_CP042942.1_3441586_3442792_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_4|NZ_CP042942.1_3442905_3443838_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NZ_CP042942.1_3443834_3444860_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_6|NZ_CP042942.1_3445156_3445246_+	PRK14756, small_mem_YnhF, YnhF family membrane protein; Validated	NA|389aa|down_7|NZ_CP042942.1_3445413_3446580_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|NZ_CP042942.1_3446625_3447207_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|280aa|down_9|NZ_CP042942.1_3447412_3448252_-	pfam00877, NLPC_P60, NlpC/P60 family
