The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP042941	Atlantibacter hermannii strain ATCC 33651 chromosome, complete genome	4315318	602501	704960	4315318	tail,protease,lysis,terminase,tRNA,portal,capsid,head,holin	Enterobacteria_phage(35.29%)	94	NA	NA
WP_040460344.1|602501_603236_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_002438115.1|603366_604692_+	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	29.9	3.9e-42
WP_002438116.1|604739_605123_-	autonomous glycyl radical cofactor GrcA	NA	A0A088FS37	Shigella_phage	70.9	1.4e-32
WP_142984768.1|605439_606120_+	uracil-DNA glycosylase	NA	A0A077BCN4	Equid_alphaherpesvirus	51.6	1.2e-55
WP_148051694.1|606160_607210_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_002438131.1|607415_607835_+	thioredoxin TrxC	NA	A0A1J0GW78	Streptomyces_phage	40.2	2.7e-13
WP_043866686.1|607915_608617_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_148051695.1|608649_611307_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_040460347.1|611421_612777_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_002438135.1|612818_613142_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_002438138.1|613138_613594_-	DUF4385 domain-containing protein	NA	A0A222YVL1	Synechococcus_phage	48.0	7.3e-33
WP_148051696.1|619392_621966_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.0	3.4e-127
WP_148051697.1|622096_622828_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_002437787.1|622824_623805_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_142984777.1|623941_624679_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_002437785.1|624944_625280_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_121497579.1|625378_625426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148051698.1|625524_626685_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_043866616.1|626732_627854_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_002437782.1|627863_628934_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	50.5	3.8e-88
WP_002437781.1|629195_629570_+	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
WP_121497580.1|629785_630271_+	YfiR family protein	NA	NA	NA	NA	NA
WP_043866618.1|630263_631484_+	diguanylate cyclase DgcN	NA	NA	NA	NA	NA
WP_148051699.1|631501_631984_+	OmpA family protein	NA	NA	NA	NA	NA
WP_148051700.1|631987_633367_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_148053051.1|633417_633783_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_148051701.1|633977_634160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148051702.1|634205_634865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002437770.1|635000_635348_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002437769.1|635389_636157_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_148053052.1|636187_636736_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002437767.1|636754_637003_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002437766.1|637261_638623_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002437765.1|638791_639583_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_072042738.1|639596_640883_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_002437762.1|640918_641509_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_002437760.1|641629_642508_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_043866622.1|642593_644255_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_040460277.1|644476_644815_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_148051703.1|644867_645386_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_148051704.1|645375_645666_-	RnfH family protein	NA	NA	NA	NA	NA
WP_072042739.1|645655_646132_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_002437749.1|646244_646727_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	48.1	1.8e-29
WP_002437748.1|646764_647934_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_148051705.1|647943_650076_-	type I secretion system permease/ATPase	NA	W8CYL7	Bacillus_phage	28.7	2.8e-26
WP_002437746.1|650099_651455_-	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_148051706.1|651555_663801_-	BapA prefix-like domain-containing protein	NA	NA	NA	NA	NA
WP_148051707.1|664946_665765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148051708.1|665905_667174_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	84.8	4.0e-214
WP_148051709.1|667174_667594_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	57.3	5.5e-35
WP_148051710.1|669671_673454_-	DUF1983 domain-containing protein	NA	O64335	Escherichia_phage	67.1	0.0e+00
WP_148051711.1|673512_674082_-|tail	tail assembly protein	tail	K7PHE5	Enterobacteria_phage	73.5	4.1e-73
WP_148053053.1|674140_674521_-	hypothetical protein	NA	G8C7Q7	Escherichia_phage	66.4	2.3e-48
WP_148051712.1|674660_675380_-	peptidase P60	NA	K7P6F5	Enterobacteria_phage	89.3	6.6e-129
WP_148051713.1|675381_676137_-|tail	phage minor tail protein L	tail	K7PKU0	Enterobacteria_phage	86.5	6.9e-129
WP_148051714.1|676133_676472_-|tail	phage tail protein	tail	K7PHJ6	Enterobacteria_phage	90.2	6.0e-56
WP_148051715.1|676471_679759_-|tail	phage tail tape measure protein	tail	A0A220NRN7	Escherichia_phage	81.8	0.0e+00
WP_148051716.1|679793_680057_-	DUF4035 domain-containing protein	NA	K7P7L5	Enterobacteria_phage	81.6	1.5e-35
WP_148051717.1|680080_680482_-|tail	phage tail protein	tail	K7P7C2	Enterobacteria_phage	83.5	2.0e-58
WP_148051718.1|680542_681016_-|tail	phage tail protein	tail	A0A220NRQ0	Escherichia_phage	84.8	3.4e-65
WP_148051719.1|681075_681423_-	DUF3168 domain-containing protein	NA	A0A220NRP0	Escherichia_phage	53.1	1.7e-26
WP_148051720.1|681419_681869_-	HK97 gp10 family phage protein	NA	Q9MCS9	Enterobacteria_phage	80.5	6.7e-63
WP_148051721.1|681865_682207_-|head	phage head closure protein	head	A0A2H4JHK5	uncultured_Caudovirales_phage	60.7	5.1e-31
WP_148051722.1|682215_682539_-|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	69.4	9.1e-38
WP_148051723.1|682538_682724_-	hypothetical protein	NA	K7PHI6	Enterobacteria_phage	54.4	5.1e-09
WP_148051724.1|682770_683985_-|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	90.3	2.6e-202
WP_148051725.1|683995_684850_-|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	79.6	3.8e-123
WP_148051726.1|684861_686166_-|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	86.9	2.3e-220
WP_148051727.1|686165_687923_-|terminase	terminase large subunit	terminase	K7PKT2	Enterobacteria_phage	91.5	0.0e+00
WP_148051728.1|687922_688396_-|terminase	phage terminase small subunit P27 family	terminase	K7PHI2	Enterobacteria_phage	89.8	1.7e-77
WP_148051729.1|688587_688788_-	hypothetical protein	NA	Q6UAR8	Klebsiella_phage	87.9	1.2e-08
WP_148051730.1|688784_689135_-	HNH endonuclease	NA	A0A1B5FP94	Escherichia_phage	80.7	1.0e-50
WP_148051731.1|689293_690358_-	acyltransferase family protein	NA	NA	NA	NA	NA
WP_148051732.1|690531_690999_-|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	62.9	1.4e-39
WP_148051733.1|690995_691622_-	glycoside hydrolase family 19 protein	NA	F1C591	Cronobacter_phage	79.7	2.5e-92
WP_148051734.1|691618_691903_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	54.3	6.8e-21
WP_148051735.1|691892_692273_-	hypothetical protein	NA	F1C592	Cronobacter_phage	79.4	2.8e-46
WP_148051736.1|692511_693417_-	S49 family peptidase	NA	NA	NA	NA	NA
WP_148051737.1|693975_694734_-	antitermination protein	NA	K7PGU5	Enterobacteria_phage	66.7	4.1e-89
WP_148051738.1|694751_695741_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	60.8	5.9e-120
WP_148051739.1|695748_696549_-	KilA-N domain-containing protein	NA	A0A0P0ZCS0	Stx2-converting_phage	72.2	3.7e-104
WP_148051740.1|696564_696951_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	86.0	1.0e-59
WP_148051741.1|696947_697268_-	LexA family transcriptional regulator	NA	K7PHB4	Enterobacterial_phage	50.9	8.2e-23
WP_148053054.1|697261_698458_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	80.1	1.2e-103
WP_148051742.1|698454_698898_-	PerC family transcriptional regulator	NA	Q8SBF0	Shigella_phage	28.6	2.2e-13
WP_148051743.1|698894_699767_-	GntR family transcriptional regulator	NA	U5P0A0	Shigella_phage	85.7	4.4e-42
WP_072042664.1|699756_699936_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	69.8	3.3e-13
WP_148051744.1|700099_700651_-	DNA-binding protein	NA	S5FXP0	Shigella_phage	62.8	7.0e-62
WP_148051745.1|700695_700896_-	helix-turn-helix domain-containing protein	NA	U5P445	Shigella_phage	81.5	8.7e-23
WP_148051746.1|700984_701659_+	LexA family transcriptional regulator	NA	U5P0T5	Shigella_phage	86.4	6.6e-115
WP_148051747.1|701869_702352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148051748.1|703154_703499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148051749.1|704006_704288_+	hypothetical protein	NA	A0A077KAZ4	Edwardsiella_phage	70.1	2.8e-27
WP_148051750.1|704291_704960_+	DUF551 domain-containing protein	NA	Q858C8	Salmonella_phage	33.0	1.0e-14
>prophage 2
NZ_CP042941	Atlantibacter hermannii strain ATCC 33651 chromosome, complete genome	4315318	744557	754150	4315318		Mycobacterium_phage(16.67%)	8	NA	NA
WP_002434666.1|744557_745622_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	63.5	4.7e-115
WP_148051768.1|745711_746209_-	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	51.3	3.4e-31
WP_043866567.1|746316_747405_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_002434661.1|747656_748193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148051769.1|748481_751052_+	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.5	8.1e-28
WP_002434658.1|751161_752154_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
WP_148053056.1|752272_753397_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	36.4	6.5e-06
WP_002434654.1|753523_754150_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	48.8	4.1e-34
>prophage 3
NZ_CP042941	Atlantibacter hermannii strain ATCC 33651 chromosome, complete genome	4315318	3897881	3908880	4315318		Escherichia_phage(57.14%)	9	NA	NA
WP_148052840.1|3897881_3898343_+	RidA family protein	NA	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	41.7	4.7e-27
WP_148052841.1|3898422_3899706_+	MFS transporter	NA	NA	NA	NA	NA
WP_148052842.1|3899744_3900503_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_148052843.1|3900852_3903285_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	81.8	0.0e+00
WP_148052844.1|3903918_3904695_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	71.7	1.2e-91
WP_002435798.1|3904751_3905345_+	molecular chaperone	NA	A0A077SLS7	Escherichia_phage	63.3	5.4e-68
WP_148052845.1|3905344_3905881_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	50.9	4.9e-44
WP_043864946.1|3906120_3907599_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	72.1	1.4e-194
WP_148052846.1|3907758_3908880_+	DUF4172 domain-containing protein	NA	A0A1V0E025	Clostridioides_phage	28.0	2.4e-08
