assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008042015.2_ASM804201v2	NZ_CP042934	Escherichia coli 042 chromosome, complete genome	1	107579-107694	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	NA,NA	NA|126aa|up_9|NZ_CP042934.2_93583_93961_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NZ_CP042934.2_93963_94785_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NZ_CP042934.2_94781_95771_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NZ_CP042934.2_95770_97057_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NZ_CP042934.2_97109_99464_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NZ_CP042934.2_99718_100534_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NZ_CP042934.2_100650_101310_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP042934.2_101321_104228_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP042934.2_104392_106744_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP042934.2_106818_107514_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP042934.2_107713_109216_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP042934.2_109226_110927_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP042934.2_111265_112144_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP042934.2_112229_112994_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP042934.2_113107_113806_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP042934.2_113789_115400_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP042934.2_115375_116359_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NZ_CP042934.2_116522_118178_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NZ_CP042934.2_118266_118398_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_9|NZ_CP042934.2_118499_119678_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCF_008042015.2_ASM804201v2	NZ_CP042934	Escherichia coli 042 chromosome, complete genome	2	297726-297879	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	Orphan	CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	NA|150aa|up_8|NZ_CP042934.2_287698_288148_+,NA	NA|1020aa|up_9|NZ_CP042934.2_284627_287687_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|150aa|up_8|NZ_CP042934.2_287698_288148_+	NA	NA|257aa|up_7|NZ_CP042934.2_289586_290357_-	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|158aa|up_6|NZ_CP042934.2_290510_290984_+	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|815aa|up_5|NZ_CP042934.2_291026_293471_-	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|193aa|up_4|NZ_CP042934.2_293710_294289_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_3|NZ_CP042934.2_294494_295262_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_2|NZ_CP042934.2_295232_295973_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|253aa|up_1|NZ_CP042934.2_296264_297023_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|166aa|up_0|NZ_CP042934.2_297198_297696_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|580aa|down_0|NZ_CP042934.2_298013_299753_-	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|257aa|down_1|NZ_CP042934.2_299712_300483_+	PRK06778, PRK06778, hypothetical protein; Validated	NA|352aa|down_2|NZ_CP042934.2_300553_301609_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_3|NZ_CP042934.2_301605_302058_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|89aa|down_4|NZ_CP042934.2_302364_302631_+	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|486aa|down_5|NZ_CP042934.2_302987_304445_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_6|NZ_CP042934.2_304705_305164_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_7|NZ_CP042934.2_305255_306500_+	PRK05077, frsA, esterase FrsA	NA|134aa|down_8|NZ_CP042934.2_306557_306959_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|352aa|down_9|NZ_CP042934.2_306997_308053_-	PRK10159, PRK10159, phosphoporin PhoE
GCF_008042015.2_ASM804201v2	NZ_CP042934	Escherichia coli 042 chromosome, complete genome	3	2338085-2338211	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	NA,NA|105aa|down_3|NZ_CP042934.2_2342775_2343090_+	NA|395aa|up_9|NZ_CP042934.2_2316992_2318177_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP042934.2_2318250_2319027_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP042934.2_2319031_2320681_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP042934.2_2320681_2325076_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP042934.2_2325219_2325843_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP042934.2_2325839_2327528_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP042934.2_2327676_2330304_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP042934.2_2330450_2331173_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP042934.2_2331300_2335053_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP042934.2_2335748_2338034_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP042934.2_2338267_2339398_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP042934.2_2339397_2339652_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP042934.2_2339705_2340356_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|105aa|down_3|NZ_CP042934.2_2342775_2343090_+	NA	NA|359aa|down_4|NZ_CP042934.2_2343308_2344385_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_5|NZ_CP042934.2_2344389_2345748_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_6|NZ_CP042934.2_2346020_2347649_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_7|NZ_CP042934.2_2347638_2348898_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_8|NZ_CP042934.2_2348894_2350085_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_9|NZ_CP042934.2_2350277_2351177_+	PRK09956, PRK09956, ISNCY family transposase
GCF_008042015.2_ASM804201v2	NZ_CP042934	Escherichia coli 042 chromosome, complete genome	4	2867920-2868619	1,1,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,10,10	11	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP042934.2_2859793_2860555_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP042934.2_2860535_2861585_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP042934.2_2861581_2862061_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP042934.2_2862060_2862771_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP042934.2_2862789_2863101_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP042934.2_2863294_2863618_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP042934.2_2863667_2864273_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP042934.2_2864272_2865700_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP042934.2_2865701_2866610_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP042934.2_2866861_2867899_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP042934.2_2868715_2869009_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP042934.2_2869005_2869929_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP042934.2_2869925_2870576_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP042934.2_2870557_2871304_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|51aa|down_4|NZ_CP042934.2_2874154_2874307_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_5|NZ_CP042934.2_2874571_2875306_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_6|NZ_CP042934.2_2875379_2877092_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_7|NZ_CP042934.2_2877091_2878891_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_8|NZ_CP042934.2_2879206_2879572_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|down_9|NZ_CP042934.2_2879649_2880921_+	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_008042015.2_ASM804201v2	NZ_CP042934	Escherichia coli 042 chromosome, complete genome	5	2891005-2891521	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	NA,NA|47aa|down_1|NZ_CP042934.2_2892670_2892811_+	NA|424aa|up_9|NZ_CP042934.2_2879649_2880921_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP042934.2_2880911_2881172_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP042934.2_2881188_2881764_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP042934.2_2881911_2882772_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP042934.2_2882768_2883548_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP042934.2_2883525_2884863_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP042934.2_2884956_2886411_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP042934.2_2886480_2887266_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP042934.2_2887584_2888862_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP042934.2_2888888_2890367_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP042934.2_2891860_2892532_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP042934.2_2892670_2892811_+	NA	NA|291aa|down_2|NZ_CP042934.2_2892824_2893697_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP042934.2_2893756_2895055_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP042934.2_2895142_2896780_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP042934.2_2897007_2897799_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP042934.2_2897869_2898205_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP042934.2_2898204_2898453_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP042934.2_2898530_2900765_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP042934.2_2900812_2902114_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_008042015.2_ASM804201v2	NZ_CP042934	Escherichia coli 042 chromosome, complete genome	6	3307690-3307829	6	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	Orphan	TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK,RT	NA,NA	NA|287aa|up_9|NZ_CP042934.2_3295095_3295956_+	PRK12738, kbaY, tagatose-bisphosphate aldolase subunit KbaY	NA|159aa|up_8|NZ_CP042934.2_3296122_3296599_+	PRK09756, PRK09756, PTS N-acetylgalactosamine transporter subunit IIB	NA|268aa|up_7|NZ_CP042934.2_3296637_3297441_+	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC	NA|264aa|up_6|NZ_CP042934.2_3297430_3298222_+	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID	NA|364aa|up_5|NZ_CP042934.2_3302032_3303124_+	pfam00419, Fimbrial, Fimbrial protein	NA|287aa|up_4|NZ_CP042934.2_3303166_3304027_-	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|679aa|up_3|NZ_CP042934.2_3304091_3306128_+	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|132aa|up_2|NZ_CP042934.2_3306085_3306481_+	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|197aa|up_1|NZ_CP042934.2_3306500_3307091_+	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|192aa|up_0|NZ_CP042934.2_3307100_3307676_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|347aa|down_0|NZ_CP042934.2_3307880_3308921_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|212aa|down_1|NZ_CP042934.2_3308993_3309629_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|173aa|down_2|NZ_CP042934.2_3309756_3310275_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|148aa|down_3|NZ_CP042934.2_3310254_3310698_-	PRK03467, PRK03467, hypothetical protein; Provisional	NA|101aa|down_4|NZ_CP042934.2_3310748_3311051_+	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|168aa|down_5|NZ_CP042934.2_3311037_3311541_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|175aa|down_6|NZ_CP042934.2_3311534_3312059_-	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|332aa|down_7|NZ_CP042934.2_3312267_3313263_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|293aa|down_8|NZ_CP042934.2_3313271_3314150_+	PRK15447, PRK15447, putative protease; Provisional	NA|336aa|down_9|NZ_CP042934.2_3314355_3315363_+	PRK10508, PRK10508, luciferase-like monooxygenase
