assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	1	268858-269066	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCGCTTCCGCTGAAGCGCCGGAG	23	0	0	NA	NA	NA	4	4	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|188aa|up_5|NZ_CP042828.1_260071_260635_+,NA|80aa|down_0|NZ_CP042828.1_271183_271423_-,NA|177aa|down_2|NZ_CP042828.1_274584_275115_+	NA|767aa|up_9|NZ_CP042828.1_251005_253306_+	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|1249aa|up_8|NZ_CP042828.1_253667_257414_-	COG2251, COG2251, Predicted nuclease (RecB family) [General function prediction only]	NA|283aa|up_7|NZ_CP042828.1_257516_258365_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|361aa|up_6|NZ_CP042828.1_258864_259947_+	cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein family	NA|188aa|up_5|NZ_CP042828.1_260071_260635_+	NA	NA|349aa|up_4|NZ_CP042828.1_260751_261798_-	COG4850, COG4850, Uncharacterized conserved protein [Function unknown]	NA|638aa|up_3|NZ_CP042828.1_262056_263970_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|756aa|up_2|NZ_CP042828.1_264157_266425_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|332aa|up_1|NZ_CP042828.1_266547_267543_+	pfam10974, DUF2804, Protein of unknown function (DUF2804)	NA|304aa|up_0|NZ_CP042828.1_267680_268592_+	pfam01545, Cation_efflux, Cation efflux family	NA|80aa|down_0|NZ_CP042828.1_271183_271423_-	NA	NA|902aa|down_1|NZ_CP042828.1_271621_274327_+	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|177aa|down_2|NZ_CP042828.1_274584_275115_+	NA	NA|1605aa|down_3|NZ_CP042828.1_275208_280023_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|171aa|down_4|NZ_CP042828.1_280189_280702_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|235aa|down_5|NZ_CP042828.1_280726_281431_-	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|267aa|down_6|NZ_CP042828.1_281430_282231_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|442aa|down_7|NZ_CP042828.1_282227_283553_-	cd06332, PBP1_aromatic_compounds-like, type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes	NA|334aa|down_8|NZ_CP042828.1_283557_284559_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|289aa|down_9|NZ_CP042828.1_284555_285422_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	2	934685-934761	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TCGCTGTGCCCGACCCGCGGTTC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|848aa|up_9|NZ_CP042828.1_920695_923239_+,NA	NA|848aa|up_9|NZ_CP042828.1_920695_923239_+	NA	NA|293aa|up_8|NZ_CP042828.1_923329_924208_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|255aa|up_7|NZ_CP042828.1_924204_924969_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|419aa|up_6|NZ_CP042828.1_925200_926457_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|332aa|up_5|NZ_CP042828.1_926734_927730_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|333aa|up_4|NZ_CP042828.1_927978_928977_+	cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|447aa|up_3|NZ_CP042828.1_928995_930336_+	COG4948, COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]	NA|319aa|up_2|NZ_CP042828.1_930332_931289_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|425aa|up_1|NZ_CP042828.1_931221_932496_-	cd00249, AGE, AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	NA|248aa|up_0|NZ_CP042828.1_932763_933507_+	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|999aa|down_0|NZ_CP042828.1_935057_938054_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|403aa|down_1|NZ_CP042828.1_938108_939317_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|234aa|down_2|NZ_CP042828.1_939333_940035_-	pfam11716, MDMPI_N, Mycothiol maleylpyruvate isomerase N-terminal domain	NA|361aa|down_3|NZ_CP042828.1_940044_941127_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|413aa|down_4|NZ_CP042828.1_941318_942557_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|451aa|down_5|NZ_CP042828.1_942553_943906_-	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|209aa|down_6|NZ_CP042828.1_944323_944950_+	pfam12840, HTH_20, Helix-turn-helix domain	NA|153aa|down_7|NZ_CP042828.1_944946_945405_+	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins	NA|269aa|down_8|NZ_CP042828.1_945466_946273_+	PRK07231, FabG-like, SDR family oxidoreductase	NA|492aa|down_9|NZ_CP042828.1_946562_948038_+	pfam00877, NLPC_P60, NlpC/P60 family
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	3	1631914-1632165	1	CRT	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	AGGCNGCCNCGGANGCCC	18	0	0	NA	NA	NA	6	6	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA	NA|264aa|up_9|NZ_CP042828.1_1621970_1622762_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|102aa|up_8|NZ_CP042828.1_1622808_1623114_+	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|119aa|up_7|NZ_CP042828.1_1623430_1623787_+	PRK12497, PRK12497, YraN family protein	NA|514aa|up_6|NZ_CP042828.1_1623803_1625345_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|388aa|up_5|NZ_CP042828.1_1625337_1626501_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|238aa|up_4|NZ_CP042828.1_1626607_1627321_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|183aa|up_3|NZ_CP042828.1_1627377_1627926_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|317aa|up_2|NZ_CP042828.1_1628121_1629072_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|264aa|up_1|NZ_CP042828.1_1629212_1630004_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|242aa|up_0|NZ_CP042828.1_1629994_1630720_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|280aa|down_0|NZ_CP042828.1_1632252_1633092_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|251aa|down_1|NZ_CP042828.1_1633238_1633991_+	PRK00358, pyrH, uridylate kinase; Provisional	NA|186aa|down_2|NZ_CP042828.1_1633987_1634545_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|296aa|down_3|NZ_CP042828.1_1634702_1635590_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|391aa|down_4|NZ_CP042828.1_1635586_1636759_+	PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional	NA|182aa|down_5|NZ_CP042828.1_1636854_1637400_+	TIGR03543, divI1A_rptt_fam, DivIVA domain repeat protein	NA|403aa|down_6|NZ_CP042828.1_1637396_1638605_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|451aa|down_7|NZ_CP042828.1_1638617_1639970_+	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|388aa|down_8|NZ_CP042828.1_1640117_1641281_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|294aa|down_9|NZ_CP042828.1_1641309_1642191_+	pfam13312, DUF4081, Domain of unknown function (DUF4081)
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	4	1747358-1747421	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CAGACCCTGACAGACGCCGACAGA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA|241aa|down_8|NZ_CP042828.1_1757005_1757728_+	NA|312aa|up_9|NZ_CP042828.1_1739007_1739943_+	TIGR00005, Ribosomal_large_subunit_pseudouridine_synthase_D, pseudouridine synthase, RluA family	NA|155aa|up_8|NZ_CP042828.1_1739939_1740404_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|343aa|up_7|NZ_CP042828.1_1740549_1741578_+	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family	NA|147aa|up_6|NZ_CP042828.1_1741574_1742015_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|494aa|up_5|NZ_CP042828.1_1742017_1743499_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|253aa|up_4|NZ_CP042828.1_1743531_1744290_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|251aa|up_3|NZ_CP042828.1_1744286_1745039_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|268aa|up_2|NZ_CP042828.1_1745035_1745839_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|321aa|up_1|NZ_CP042828.1_1745867_1746830_+	cd13652, PBP2_ThiY_THI5_like_1, Putative substrate binding domain of an ABC-type transporter similar to ThiY/THI5; the type 2 periplasmic binding protein fold	NA|156aa|up_0|NZ_CP042828.1_1746861_1747329_+	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|422aa|down_0|NZ_CP042828.1_1747463_1748729_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|1182aa|down_1|NZ_CP042828.1_1748809_1752355_+	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|121aa|down_2|NZ_CP042828.1_1752374_1752737_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|80aa|down_3|NZ_CP042828.1_1752782_1753022_-	pfam13275, S4_2, S4 domain	NA|87aa|down_4|NZ_CP042828.1_1754508_1754769_+	pfam04024, PspC, PspC domain	NA|122aa|down_5|NZ_CP042828.1_1754845_1755211_-	pfam06108, DUF952, Protein of unknown function (DUF952)	NA|375aa|down_6|NZ_CP042828.1_1755261_1756386_+	PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional	NA|209aa|down_7|NZ_CP042828.1_1756382_1757009_+	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB	NA|241aa|down_8|NZ_CP042828.1_1757005_1757728_+	NA	NA|205aa|down_9|NZ_CP042828.1_1757724_1758339_+	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	5	1858154-1858229	4	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	GACGGCTCCGCAGAGCCGACCGACG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA|358aa|down_0|NZ_CP042828.1_1858582_1859656_-,NA|644aa|down_6|NZ_CP042828.1_1864629_1866561_-,NA|169aa|down_8|NZ_CP042828.1_1868020_1868527_+	NA|501aa|up_9|NZ_CP042828.1_1847048_1848551_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|248aa|up_8|NZ_CP042828.1_1848688_1849432_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|103aa|up_7|NZ_CP042828.1_1849551_1849860_-	COG1254, AcyP, Acylphosphatases [Energy production and conversion]	NA|237aa|up_6|NZ_CP042828.1_1849923_1850634_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|140aa|up_5|NZ_CP042828.1_1850778_1851198_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|403aa|up_4|NZ_CP042828.1_1851276_1852485_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|260aa|up_3|NZ_CP042828.1_1852890_1853670_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|329aa|up_2|NZ_CP042828.1_1853662_1854649_-	cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A	NA|234aa|up_1|NZ_CP042828.1_1854741_1855443_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|167aa|up_0|NZ_CP042828.1_1855450_1855951_-	pfam16571, FBP_C, FBP C-terminal treble-clef zinc-finger	NA|358aa|down_0|NZ_CP042828.1_1858582_1859656_-	NA	NA|118aa|down_1|NZ_CP042828.1_1859655_1860009_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|241aa|down_2|NZ_CP042828.1_1860199_1860922_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|494aa|down_3|NZ_CP042828.1_1861017_1862499_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|213aa|down_4|NZ_CP042828.1_1862529_1863168_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|438aa|down_5|NZ_CP042828.1_1863263_1864577_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|644aa|down_6|NZ_CP042828.1_1864629_1866561_-	NA	NA|298aa|down_7|NZ_CP042828.1_1866585_1867479_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|169aa|down_8|NZ_CP042828.1_1868020_1868527_+	NA	NA|408aa|down_9|NZ_CP042828.1_1868606_1869830_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	6	1953172-1953246	5	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCGGAGGAGACCGCTTCCGCTGAA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|54aa|up_1|NZ_CP042828.1_1951256_1951418_+,NA	NA|261aa|up_9|NZ_CP042828.1_1942133_1942916_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|396aa|up_8|NZ_CP042828.1_1942912_1944100_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|215aa|up_7|NZ_CP042828.1_1944096_1944741_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|602aa|up_6|NZ_CP042828.1_1944805_1946611_-	pfam04960, Glutaminase, Glutaminase	NA|183aa|up_5|NZ_CP042828.1_1946640_1947189_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|348aa|up_4|NZ_CP042828.1_1947702_1948746_+	cd01095, Nitrilotriacetate_monoxgenase, nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen	NA|438aa|up_3|NZ_CP042828.1_1948836_1950150_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|249aa|up_2|NZ_CP042828.1_1950357_1951104_+	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases	NA|54aa|up_1|NZ_CP042828.1_1951256_1951418_+	NA	NA|214aa|up_0|NZ_CP042828.1_1951483_1952125_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|135aa|down_0|NZ_CP042828.1_1953813_1954218_+	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|216aa|down_1|NZ_CP042828.1_1954214_1954862_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|267aa|down_2|NZ_CP042828.1_1956541_1957342_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|253aa|down_3|NZ_CP042828.1_1957426_1958185_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|166aa|down_4|NZ_CP042828.1_1958936_1959434_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|214aa|down_5|NZ_CP042828.1_1959430_1960072_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|450aa|down_6|NZ_CP042828.1_1960203_1961553_+	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase	NA|435aa|down_7|NZ_CP042828.1_1961602_1962907_+	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters	NA|371aa|down_8|NZ_CP042828.1_1962926_1964039_+	cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)	NA|486aa|down_9|NZ_CP042828.1_1964094_1965552_+	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	7	2074346-2074419	6	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCCGGGGTCGTGACTCTGCCACT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|80aa|up_6|NZ_CP042828.1_2065307_2065547_+,NA|545aa|down_8|NZ_CP042828.1_2086587_2088222_+	NA|204aa|up_9|NZ_CP042828.1_2060918_2061530_+	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|253aa|up_8|NZ_CP042828.1_2061526_2062285_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|908aa|up_7|NZ_CP042828.1_2062281_2065005_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|80aa|up_6|NZ_CP042828.1_2065307_2065547_+	NA	NA|462aa|up_5|NZ_CP042828.1_2065569_2066955_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|136aa|up_4|NZ_CP042828.1_2067065_2067473_+	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|485aa|up_3|NZ_CP042828.1_2067546_2069001_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|598aa|up_2|NZ_CP042828.1_2069350_2071144_+	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|220aa|up_1|NZ_CP042828.1_2071209_2071869_-	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|715aa|up_0|NZ_CP042828.1_2072002_2074147_-	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|155aa|down_0|NZ_CP042828.1_2074804_2075269_+	pfam14110, DUF4282, Domain of unknown function (DUF4282)	NA|280aa|down_1|NZ_CP042828.1_2075481_2076321_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|634aa|down_2|NZ_CP042828.1_2076381_2078283_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|855aa|down_3|NZ_CP042828.1_2078251_2080816_-	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|303aa|down_4|NZ_CP042828.1_2080931_2081840_+	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku	NA|617aa|down_5|NZ_CP042828.1_2082024_2083875_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|606aa|down_6|NZ_CP042828.1_2083871_2085689_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|258aa|down_7|NZ_CP042828.1_2085712_2086486_+	pfam01391, Collagen, Collagen triple helix repeat (20 copies)	NA|545aa|down_8|NZ_CP042828.1_2086587_2088222_+	NA	NA|697aa|down_9|NZ_CP042828.1_2088218_2090309_+	NF000535, MSCRAMM_SdrC, MSCRAMM family adhesin SdrC
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	8	2109634-2109722	7	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TGAGTGTCGGGGCGAGCGCGGTCGTGCGCAC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|347aa|up_6|NZ_CP042828.1_2103824_2104865_+,NA|202aa|down_1|NZ_CP042828.1_2112827_2113433_+	NA|339aa|up_9|NZ_CP042828.1_2099636_2100653_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|474aa|up_8|NZ_CP042828.1_2100880_2102302_+	PRK02925, PRK02925, glucuronate isomerase; Reviewed	NA|486aa|up_7|NZ_CP042828.1_2102237_2103695_+	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]	NA|347aa|up_6|NZ_CP042828.1_2103824_2104865_+	NA	NA|378aa|up_5|NZ_CP042828.1_2104982_2106116_+	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family	NA|152aa|up_4|NZ_CP042828.1_2106152_2106608_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|196aa|up_3|NZ_CP042828.1_2106600_2107188_+	TIGR04037, predicted_flavoprotein, LLM-partnered FMN reductase, CE1759 family	NA|309aa|up_2|NZ_CP042828.1_2107191_2108118_-	pfam12852, Cupin_6, Cupin	NA|292aa|up_1|NZ_CP042828.1_2108186_2109062_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|150aa|up_0|NZ_CP042828.1_2109067_2109517_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|973aa|down_0|NZ_CP042828.1_2109905_2112824_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|202aa|down_1|NZ_CP042828.1_2112827_2113433_+	NA	NA|166aa|down_2|NZ_CP042828.1_2113564_2114062_+	TIGR03667, Rv3369, PPOX class probable F420-dependent enzyme, Rv3369 family	NA|276aa|down_3|NZ_CP042828.1_2114205_2115033_+	TIGR01259, ComE_operon_protein_1, comEA protein	NA|459aa|down_4|NZ_CP042828.1_2115029_2116406_+	pfam03772, Competence, Competence protein	NA|351aa|down_5|NZ_CP042828.1_2116789_2117842_+	PRK07914, PRK07914, hypothetical protein; Reviewed	NA|87aa|down_6|NZ_CP042828.1_2118044_2118305_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|180aa|down_7|NZ_CP042828.1_2118500_2119040_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|402aa|down_8|NZ_CP042828.1_2119084_2120290_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|260aa|down_9|NZ_CP042828.1_2120514_2121294_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	9	2561095-2561201	8	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CGCCTCACTCCTCACAAATCTGTA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|110aa|up_7|NZ_CP042828.1_2553563_2553893_-,NA|129aa|up_5|NZ_CP042828.1_2554742_2555129_-,NA|273aa|up_4|NZ_CP042828.1_2555347_2556166_-,NA|322aa|up_1|NZ_CP042828.1_2558335_2559301_-,NA|218aa|down_4|NZ_CP042828.1_2567395_2568049_-	NA|193aa|up_9|NZ_CP042828.1_2552241_2552820_-	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|110aa|up_8|NZ_CP042828.1_2553049_2553379_-	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|110aa|up_7|NZ_CP042828.1_2553563_2553893_-	NA	NA|132aa|up_6|NZ_CP042828.1_2554164_2554560_-	pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal	NA|129aa|up_5|NZ_CP042828.1_2554742_2555129_-	NA	NA|273aa|up_4|NZ_CP042828.1_2555347_2556166_-	NA	NA|177aa|up_3|NZ_CP042828.1_2556313_2556844_-	pfam16640, Big_3_5, Bacterial Ig-like domain (group 3)	NA|361aa|up_2|NZ_CP042828.1_2556971_2558054_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|322aa|up_1|NZ_CP042828.1_2558335_2559301_-	NA	NA|470aa|up_0|NZ_CP042828.1_2559489_2560899_-	PRK07846, PRK07846, mycothione reductase; Reviewed	NA|135aa|down_0|NZ_CP042828.1_2562779_2563184_+	pfam06271, RDD, RDD family	NA|390aa|down_1|NZ_CP042828.1_2563272_2564442_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|603aa|down_2|NZ_CP042828.1_2564476_2566285_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|239aa|down_3|NZ_CP042828.1_2566624_2567341_-	pfam13829, DUF4191, Domain of unknown function (DUF4191)	NA|218aa|down_4|NZ_CP042828.1_2567395_2568049_-	NA	NA|334aa|down_5|NZ_CP042828.1_2568179_2569181_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|217aa|down_6|NZ_CP042828.1_2569357_2570008_-	PRK14345, PRK14345, lipoyl(octanoyl) transferase LipB	NA|215aa|down_7|NZ_CP042828.1_2570069_2570714_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|477aa|down_8|NZ_CP042828.1_2570779_2572210_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|393aa|down_9|NZ_CP042828.1_2572559_2573738_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	10	2590561-2590649	9	CRISPRCasFinder	no	DEDDh	csa3,WYL,cas3,DEDDh,DinG	Unclear	TAAGCCACGCGAGCTGCGCCGTC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA	NA|359aa|up_9|NZ_CP042828.1_2580815_2581892_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|338aa|up_8|NZ_CP042828.1_2582027_2583041_-	cd19074, Aldo_ket_red_shaker-like, Shaker potassium channel beta subunit family and similar proteins	NA|195aa|up_7|NZ_CP042828.1_2583061_2583646_-	pfam11241, DUF3043, Protein of unknown function (DUF3043)	NA|204aa|up_6|NZ_CP042828.1_2583739_2584351_-	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|369aa|up_5|NZ_CP042828.1_2584405_2585512_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|120aa|up_4|NZ_CP042828.1_2585625_2585985_+	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|335aa|up_3|NZ_CP042828.1_2586109_2587114_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|256aa|up_2|NZ_CP042828.1_2587414_2588182_+	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|585aa|up_1|NZ_CP042828.1_2588181_2589936_+	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I	NA|133aa|up_0|NZ_CP042828.1_2590001_2590400_+	pfam12270, Cyt_c_ox_IV, Cytochrome c oxidase subunit IV	NA|204aa|down_0|NZ_CP042828.1_2590856_2591468_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|560aa|down_1|NZ_CP042828.1_2591599_2593279_-	pfam13631, Cytochrom_B_N_2, Cytochrome b(N-terminal)/b6/petB	NA|341aa|down_2|NZ_CP042828.1_2593275_2594298_-	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|260aa|down_3|NZ_CP042828.1_2594300_2595080_-	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III	NA|217aa|down_4|NZ_CP042828.1_2595130_2595781_-	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]	NA|137aa|down_5|NZ_CP042828.1_2596066_2596477_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|355aa|down_6|NZ_CP042828.1_2596480_2597545_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|94aa|down_7|NZ_CP042828.1_2597753_2598035_-	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	DEDDh|592aa|down_8|NZ_CP042828.1_2598095_2599871_-	PRK07883, PRK07883, DEDD exonuclease domain-containing protein	NA|606aa|down_9|NZ_CP042828.1_2600218_2602036_-	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	11	3290428-3290524	10	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DEDDh,DinG	Type I-A	TAGCGACCCACCCGCCGACTACGGCCCACCGCC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|89aa|up_5|NZ_CP042828.1_3283064_3283331_-,NA|137aa|up_3|NZ_CP042828.1_3284429_3284840_-,NA|100aa|up_1|NZ_CP042828.1_3287783_3288083_+,NA|145aa|up_0|NZ_CP042828.1_3288079_3288514_+,NA|95aa|down_9|NZ_CP042828.1_3299848_3300133_-	NA|382aa|up_9|NZ_CP042828.1_3278781_3279927_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|323aa|up_8|NZ_CP042828.1_3280163_3281132_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|122aa|up_7|NZ_CP042828.1_3281437_3281803_-	pfam14248, DUF4345, Domain of unknown function (DUF4345)	NA|253aa|up_6|NZ_CP042828.1_3282214_3282973_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|89aa|up_5|NZ_CP042828.1_3283064_3283331_-	NA	NA|341aa|up_4|NZ_CP042828.1_3283327_3284350_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|137aa|up_3|NZ_CP042828.1_3284429_3284840_-	NA	NA|824aa|up_2|NZ_CP042828.1_3284849_3287321_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|100aa|up_1|NZ_CP042828.1_3287783_3288083_+	NA	NA|145aa|up_0|NZ_CP042828.1_3288079_3288514_+	NA	NA|205aa|down_0|NZ_CP042828.1_3290557_3291172_+	pfam13649, Methyltransf_25, Methyltransferase domain	csa3|117aa|down_1|NZ_CP042828.1_3291227_3291578_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|391aa|down_2|NZ_CP042828.1_3291657_3292830_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|375aa|down_3|NZ_CP042828.1_3292859_3293984_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|403aa|down_4|NZ_CP042828.1_3293983_3295192_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|354aa|down_5|NZ_CP042828.1_3295263_3296325_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|329aa|down_6|NZ_CP042828.1_3296315_3297302_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|346aa|down_7|NZ_CP042828.1_3297324_3298362_-	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	NA|444aa|down_8|NZ_CP042828.1_3298533_3299865_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|95aa|down_9|NZ_CP042828.1_3299848_3300133_-	NA
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	12	3328157-3328221	11	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	GCGCTCGGGTCTTCGCTCGCGTC	23	1	2	3328180-3328198|3328180-3328198	NZ_CP042828.1_3328210-3328228|NZ_CP042828.1_3328228-3328246	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|72aa|up_5|NZ_CP042828.1_3317161_3317377_-,NA|353aa|up_0|NZ_CP042828.1_3325975_3327034_-,NA|142aa|down_2|NZ_CP042828.1_3330998_3331424_+,NA|233aa|down_3|NZ_CP042828.1_3331413_3332112_-,NA|103aa|down_6|NZ_CP042828.1_3334473_3334782_-	NA|270aa|up_9|NZ_CP042828.1_3312119_3312929_+	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins	NA|260aa|up_8|NZ_CP042828.1_3312967_3313747_+	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|864aa|up_7|NZ_CP042828.1_3313776_3316368_-	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase	NA|110aa|up_6|NZ_CP042828.1_3316666_3316996_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|72aa|up_5|NZ_CP042828.1_3317161_3317377_-	NA	NA|672aa|up_4|NZ_CP042828.1_3317510_3319526_+	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|590aa|up_3|NZ_CP042828.1_3319522_3321292_+	TIGR02456, Trehalose_synthase, trehalose synthase	NA|1200aa|up_2|NZ_CP042828.1_3321288_3324888_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|309aa|up_1|NZ_CP042828.1_3325018_3325945_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|353aa|up_0|NZ_CP042828.1_3325975_3327034_-	NA	NA|534aa|down_0|NZ_CP042828.1_3328839_3330441_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|164aa|down_1|NZ_CP042828.1_3330450_3330942_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|142aa|down_2|NZ_CP042828.1_3330998_3331424_+	NA	NA|233aa|down_3|NZ_CP042828.1_3331413_3332112_-	NA	NA|226aa|down_4|NZ_CP042828.1_3332108_3332786_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|496aa|down_5|NZ_CP042828.1_3332950_3334438_+	pfam04107, GCS2, Glutamate-cysteine ligase family 2(GCS2)	NA|103aa|down_6|NZ_CP042828.1_3334473_3334782_-	NA	NA|101aa|down_7|NZ_CP042828.1_3334869_3335172_-	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|275aa|down_8|NZ_CP042828.1_3335401_3336226_+	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|564aa|down_9|NZ_CP042828.1_3336302_3337994_-	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	13	3435384-3435477	12	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTCGGTCAGGCCAGCGGACAGGCCGCCGGTCAAG	34	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|329aa|up_7|NZ_CP042828.1_3426340_3427327_-,NA	NA|228aa|up_9|NZ_CP042828.1_3424412_3425096_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|268aa|up_8|NZ_CP042828.1_3425403_3426207_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|329aa|up_7|NZ_CP042828.1_3426340_3427327_-	NA	NA|80aa|up_6|NZ_CP042828.1_3427533_3427773_-	PRK13614, PRK13614, lipoprotein LpqB; Provisional	NA|487aa|up_5|NZ_CP042828.1_3427754_3429215_-	PRK13614, PRK13614, lipoprotein LpqB; Provisional	NA|575aa|up_4|NZ_CP042828.1_3429211_3430936_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|228aa|up_3|NZ_CP042828.1_3430908_3431592_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|313aa|up_2|NZ_CP042828.1_3432287_3433226_+	pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl diester phosphodiesterase	NA|224aa|up_1|NZ_CP042828.1_3433228_3433900_+	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|395aa|up_0|NZ_CP042828.1_3433896_3435081_+	pfam14258, DUF4350, Domain of unknown function (DUF4350)	NA|325aa|down_0|NZ_CP042828.1_3435653_3436628_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|431aa|down_1|NZ_CP042828.1_3436627_3437920_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|506aa|down_2|NZ_CP042828.1_3438108_3439626_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|252aa|down_3|NZ_CP042828.1_3440928_3441684_+	pfam06271, RDD, RDD family	NA|438aa|down_4|NZ_CP042828.1_3441830_3443144_-	PRK14853, nhaA, pH-dependent sodium/proton antiporter; Provisional	NA|493aa|down_5|NZ_CP042828.1_3443154_3444633_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|312aa|down_6|NZ_CP042828.1_3444887_3445823_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|320aa|down_7|NZ_CP042828.1_3445860_3446820_-	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|424aa|down_8|NZ_CP042828.1_3446816_3448088_-	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	NA|389aa|down_9|NZ_CP042828.1_3448372_3449539_+	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	14	3550849-3550949	13	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCGGTCGCGTGCACCTCGCCGCC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|154aa|up_8|NZ_CP042828.1_3540266_3540728_+,NA|263aa|down_8|NZ_CP042828.1_3560716_3561505_-	NA|343aa|up_9|NZ_CP042828.1_3539133_3540162_-	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|154aa|up_8|NZ_CP042828.1_3540266_3540728_+	NA	NA|294aa|up_7|NZ_CP042828.1_3540742_3541624_+	cd01945, ribokinase_group_B, Ribokinase-like subgroup B	NA|176aa|up_6|NZ_CP042828.1_3541644_3542172_-	pfam00731, AIRC, AIR carboxylase	NA|416aa|up_5|NZ_CP042828.1_3542168_3543416_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|263aa|up_4|NZ_CP042828.1_3543544_3544333_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|430aa|up_3|NZ_CP042828.1_3544463_3545753_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|277aa|up_2|NZ_CP042828.1_3545962_3546793_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|259aa|up_1|NZ_CP042828.1_3546882_3547659_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|338aa|up_0|NZ_CP042828.1_3547673_3548687_+	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|177aa|down_0|NZ_CP042828.1_3552776_3553307_+	pfam04138, GtrA, GtrA-like protein	NA|298aa|down_1|NZ_CP042828.1_3553218_3554112_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|228aa|down_2|NZ_CP042828.1_3554558_3555242_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|365aa|down_3|NZ_CP042828.1_3555334_3556429_-	cd07302, CHD, cyclase homology domain	NA|183aa|down_4|NZ_CP042828.1_3557185_3557734_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|303aa|down_5|NZ_CP042828.1_3557800_3558709_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|542aa|down_6|NZ_CP042828.1_3558824_3560450_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|83aa|down_7|NZ_CP042828.1_3560446_3560695_+	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit	NA|263aa|down_8|NZ_CP042828.1_3560716_3561505_-	NA	NA|265aa|down_9|NZ_CP042828.1_3561669_3562464_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX
GCF_008000995.1_ASM800099v1	NZ_CP042828	Ruania sp. HY168 chromosome, complete genome	15	4364026-4364140	14	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCGGGCGATTCGGCAGCCAGCCCGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|132aa|up_8|NZ_CP042828.1_4354766_4355162_-,NA|192aa|up_4|NZ_CP042828.1_4358727_4359303_+,NA|55aa|down_6|NZ_CP042828.1_4371644_4371809_-	NA|329aa|up_9|NZ_CP042828.1_4353710_4354697_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|132aa|up_8|NZ_CP042828.1_4354766_4355162_-	NA	NA|265aa|up_7|NZ_CP042828.1_4355195_4355990_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|307aa|up_6|NZ_CP042828.1_4355986_4356907_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|494aa|up_5|NZ_CP042828.1_4357136_4358618_+	pfam13204, DUF4038, Protein of unknown function (DUF4038)	NA|192aa|up_4|NZ_CP042828.1_4358727_4359303_+	NA	NA|166aa|up_3|NZ_CP042828.1_4359627_4360125_-	PRK07922, PRK07922, amino-acid N-acetyltransferase	NA|387aa|up_2|NZ_CP042828.1_4360156_4361317_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|506aa|up_1|NZ_CP042828.1_4361315_4362833_+	cd07789, FGGY_CsGK_like, Cellulomonas sp	NA|309aa|up_0|NZ_CP042828.1_4363034_4363961_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|461aa|down_0|NZ_CP042828.1_4364428_4365811_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|522aa|down_1|NZ_CP042828.1_4365866_4367432_+	cd09001, GH43_FsAxh1-like, Glycosyl hydrolase family 43 such as Fibrobacter succinogenes subsp	NA|630aa|down_2|NZ_CP042828.1_4367431_4369321_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|311aa|down_3|NZ_CP042828.1_4369333_4370266_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|305aa|down_4|NZ_CP042828.1_4370267_4371182_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|160aa|down_5|NZ_CP042828.1_4371181_4371661_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|55aa|down_6|NZ_CP042828.1_4371644_4371809_-	NA	NA|398aa|down_7|NZ_CP042828.1_4371874_4373068_-	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|65aa|down_8|NZ_CP042828.1_4373088_4373283_-	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|263aa|down_9|NZ_CP042828.1_4373388_4374177_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]
