assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007998085.1_ASM799808v1	NZ_CP042627	Escherichia coli strain NCYU-25-82 chromosome, complete genome	1	173186-173311	1	CRISPRCasFinder	no		DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	Orphan	GTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA,NA	NA|275aa|up_9|NZ_CP042627.1_157738_158563_+	PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed	NA|270aa|up_8|NZ_CP042627.1_158562_159372_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|93aa|up_7|NZ_CP042627.1_159954_160233_+	pfam08891, YfcL, YfcL protein	NA|393aa|up_6|NZ_CP042627.1_164029_165208_+	PRK12382, PRK12382, putative transporter; Provisional	NA|100aa|up_5|NZ_CP042627.1_165898_166198_-	PRK10715, flk, flagella biosynthesis regulator Flk	NA|271aa|up_4|NZ_CP042627.1_168511_169324_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|220aa|up_3|NZ_CP042627.1_169406_170066_+	PRK10847, PRK10847, DedA family protein	NA|305aa|up_2|NZ_CP042627.1_170221_171136_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|423aa|up_1|NZ_CP042627.1_171205_172474_+	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|221aa|up_0|NZ_CP042627.1_172463_173126_+	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|506aa|down_0|NZ_CP042627.1_174001_175519_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|239aa|down_1|NZ_CP042627.1_179004_179721_+	PRK15069, PRK15069, histidine ABC transporter permease HisM	NA|258aa|down_2|NZ_CP042627.1_179728_180502_+	PRK10619, PRK10619, histidine ABC transporter ATP-binding protein HisP	NA|121aa|down_3|NZ_CP042627.1_182550_182913_-	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase	NA|216aa|down_4|NZ_CP042627.1_182969_183617_-	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|215aa|down_5|NZ_CP042627.1_183752_184397_+	PRK15113, PRK15113, glutathione transferase	NA|181aa|down_6|NZ_CP042627.1_185060_185603_+	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|468aa|down_7|NZ_CP042627.1_185635_187039_-	PRK11588, PRK11588, putative basic amino acid antiporter YfcC	NA|152aa|down_8|NZ_CP042627.1_191099_191555_+	PRK01816, PRK01816, hypothetical protein; Provisional	NA|217aa|down_9|NZ_CP042627.1_192140_192791_+	PRK11587, PRK11587, putative phosphatase; Provisional
GCF_007998085.1_ASM799808v1	NZ_CP042627	Escherichia coli strain NCYU-25-82 chromosome, complete genome	2	248456-248573	2	CRISPRCasFinder	no		DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA,NA	NA|201aa|up_9|NZ_CP042627.1_234182_234785_+	PRK15416, PRK15416, lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional	NA|142aa|up_8|NZ_CP042627.1_234823_235249_-	PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional	NA|181aa|up_7|NZ_CP042627.1_235526_236069_+	pfam07437, YfaZ, YfaZ precursor	NA|157aa|up_6|NZ_CP042627.1_237426_237897_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|543aa|up_5|NZ_CP042627.1_241467_243096_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP042627.1_243368_244727_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP042627.1_244731_245808_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP042627.1_246270_246921_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP042627.1_246974_247229_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP042627.1_247228_248359_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|241aa|down_0|NZ_CP042627.1_255446_256169_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_1|NZ_CP042627.1_256315_258943_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|259aa|down_2|NZ_CP042627.1_267588_268365_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP042627.1_271689_272340_-	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|217aa|down_4|NZ_CP042627.1_279173_279824_+	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|548aa|down_5|NZ_CP042627.1_279899_281543_+	PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional	NA|163aa|down_6|NZ_CP042627.1_284011_284500_-	COG4574, Eco, Serine protease inhibitor ecotin [General function prediction only]	NA|165aa|down_7|NZ_CP042627.1_284907_285402_+	PRK10194, PRK10194, ferredoxin-type protein NapF	NA|88aa|down_8|NZ_CP042627.1_285391_285655_+	PRK10553, PRK10553, chaperone NapD	NA|829aa|down_9|NZ_CP042627.1_285651_288138_+	PRK13532, PRK13532, nitrate reductase catalytic subunit NapA
GCF_007998085.1_ASM799808v1	NZ_CP042627	Escherichia coli strain NCYU-25-82 chromosome, complete genome	3	973683-973806	3	CRISPRCasFinder	no		DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	Orphan	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA,NA|30aa|down_3|NZ_CP042627.1_982679_982769_+	NA|123aa|up_9|NZ_CP042627.1_955866_956235_+	PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional	NA|496aa|up_8|NZ_CP042627.1_956243_957731_+	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional	NA|249aa|up_7|NZ_CP042627.1_957740_958487_+	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed	NA|139aa|up_6|NZ_CP042627.1_960960_961377_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|79aa|up_5|NZ_CP042627.1_962592_962829_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|70aa|up_4|NZ_CP042627.1_965107_965317_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_3|NZ_CP042627.1_965772_966399_+	PRK09898, PRK09898, ferredoxin-like protein	NA|223aa|up_2|NZ_CP042627.1_969238_969907_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_1|NZ_CP042627.1_969903_970689_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|102aa|up_0|NZ_CP042627.1_973243_973549_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|458aa|down_0|NZ_CP042627.1_975416_976790_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|311aa|down_1|NZ_CP042627.1_980426_981359_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_2|NZ_CP042627.1_981355_982381_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_3|NZ_CP042627.1_982679_982769_+	NA	NA|194aa|down_4|NZ_CP042627.1_984248_984830_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_5|NZ_CP042627.1_984957_985773_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|136aa|down_6|NZ_CP042627.1_991963_992371_-	PRK10291, PRK10291, glyoxalase I; Provisional	NA|366aa|down_7|NZ_CP042627.1_992451_993549_-	PRK10605, PRK10605, N-ethylmaleimide reductase; Provisional	NA|80aa|down_8|NZ_CP042627.1_994289_994529_+	COG3313, COG3313, Predicted Fe-S protein [General function prediction only]	NA|299aa|down_9|NZ_CP042627.1_994577_995474_+	COG4989, COG4989, Predicted oxidoreductase [General function prediction only]
GCF_007998085.1_ASM799808v1	NZ_CP042627	Escherichia coli strain NCYU-25-82 chromosome, complete genome	4	2757230-2757364	1	PILER-CR	no		DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA,NA	NA|283aa|up_9|NZ_CP042627.1_2747759_2748608_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|105aa|up_8|NZ_CP042627.1_2748604_2748919_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_7|NZ_CP042627.1_2748921_2749155_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_6|NZ_CP042627.1_2749240_2749720_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|177aa|up_5|NZ_CP042627.1_2751764_2752295_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP042627.1_2752405_2753737_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP042627.1_2753794_2754082_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP042627.1_2754078_2755365_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP042627.1_2755415_2756357_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP042627.1_2756371_2757142_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|406aa|down_0|NZ_CP042627.1_2760430_2761648_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|262aa|down_1|NZ_CP042627.1_2763382_2764168_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_2|NZ_CP042627.1_2764173_2764764_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_3|NZ_CP042627.1_2764882_2765278_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_4|NZ_CP042627.1_2765538_2768760_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|274aa|down_5|NZ_CP042627.1_2770381_2771203_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_6|NZ_CP042627.1_2771369_2772284_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_7|NZ_CP042627.1_2772349_2773300_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|165aa|down_8|NZ_CP042627.1_2773837_2774332_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_9|NZ_CP042627.1_2774331_2777148_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed
GCF_007998085.1_ASM799808v1	NZ_CP042627	Escherichia coli strain NCYU-25-82 chromosome, complete genome	5	2931940-2932089	4	CRISPRCasFinder	no		DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA|152aa|up_9|NZ_CP042627.1_2916981_2917437_-,NA|96aa|up_8|NZ_CP042627.1_2917429_2917717_-,NA	NA|152aa|up_9|NZ_CP042627.1_2916981_2917437_-	NA	NA|96aa|up_8|NZ_CP042627.1_2917429_2917717_-	NA	NA|135aa|up_7|NZ_CP042627.1_2917709_2918114_-	pfam10554, Phage_ASH, Ash protein family	NA|73aa|up_6|NZ_CP042627.1_2918080_2918299_-	pfam10554, Phage_ASH, Ash protein family	NA|167aa|up_5|NZ_CP042627.1_2919846_2920347_+	PRK09678, PRK09678, DNA-binding transcriptional regulator; Provisional	NA|191aa|up_4|NZ_CP042627.1_2920420_2920993_+	pfam07455, Psu, Phage polarity suppression protein (Psu)	NA|81aa|up_3|NZ_CP042627.1_2922250_2922493_+	cd00047, PTPc, catalytic domain of protein tyrosine phosphatases	NA|422aa|up_2|NZ_CP042627.1_2924238_2925504_-	PRK09692, PRK09692, integrase; Provisional	NA|70aa|up_1|NZ_CP042627.1_2925986_2926196_+	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family	NA|510aa|up_0|NZ_CP042627.1_2926278_2927808_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|362aa|down_0|NZ_CP042627.1_2932698_2933784_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|175aa|down_1|NZ_CP042627.1_2933633_2934158_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|239aa|down_2|NZ_CP042627.1_2934136_2934853_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|229aa|down_3|NZ_CP042627.1_2934864_2935551_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|168aa|down_4|NZ_CP042627.1_2936994_2937498_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_5|NZ_CP042627.1_2937543_2937960_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_6|NZ_CP042627.1_2938121_2939126_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_7|NZ_CP042627.1_2940971_2941424_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP042627.1_2941568_2942162_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP042627.1_2942232_2942946_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_007998085.1_ASM799808v1	NZ_CP042627	Escherichia coli strain NCYU-25-82 chromosome, complete genome	6	4251912-4252313	2	PILER-CR	no		DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	Orphan	TTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATC	63	3	3	4251975-4252024|4252088-4252137|4252201-4252250	NZ_CP042627.1_4251863-4251912|NZ_CP042627.1_4251863-4251912|NZ_CP042627.1_4251863-4251912	NA	3	3	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA,NA|55aa|down_6|NZ_CP042627.1_4267068_4267233_-	NA|160aa|up_9|NZ_CP042627.1_4234593_4235073_-	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC	NA|159aa|up_8|NZ_CP042627.1_4235145_4235622_-	PRK09756, PRK09756, PTS N-acetylgalactosamine transporter subunit IIB	NA|287aa|up_7|NZ_CP042627.1_4235788_4236649_-	PRK12738, kbaY, tagatose-bisphosphate aldolase subunit KbaY	NA|385aa|up_6|NZ_CP042627.1_4236661_4237816_-	TIGR02815, agaS_fam, putative sugar isomerase, AgaS family	NA|145aa|up_5|NZ_CP042627.1_4239293_4239728_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|158aa|up_4|NZ_CP042627.1_4241403_4241877_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|270aa|up_3|NZ_CP042627.1_4243427_4244237_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|112aa|up_2|NZ_CP042627.1_4244754_4245090_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_1|NZ_CP042627.1_4245239_4246811_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_0|NZ_CP042627.1_4248534_4249305_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|313aa|down_0|NZ_CP042627.1_4255136_4256075_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|444aa|down_1|NZ_CP042627.1_4257180_4258512_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|765aa|down_2|NZ_CP042627.1_4259779_4262074_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_3|NZ_CP042627.1_4262087_4262477_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_4|NZ_CP042627.1_4262548_4263913_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|450aa|down_5|NZ_CP042627.1_4264187_4265537_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|55aa|down_6|NZ_CP042627.1_4267068_4267233_-	NA	NA|299aa|down_7|NZ_CP042627.1_4268060_4268957_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_8|NZ_CP042627.1_4269007_4269364_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_9|NZ_CP042627.1_4269605_4269971_-	COG3152, COG3152, Predicted membrane protein [Function unknown]
GCF_007998085.1_ASM799808v1	NZ_CP042627	Escherichia coli strain NCYU-25-82 chromosome, complete genome	7	4266878-4266995	5	CRISPRCasFinder	no		DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA,NA|55aa|down_0|NZ_CP042627.1_4267068_4267233_-	NA|270aa|up_9|NZ_CP042627.1_4243427_4244237_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|112aa|up_8|NZ_CP042627.1_4244754_4245090_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_7|NZ_CP042627.1_4245239_4246811_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_6|NZ_CP042627.1_4248534_4249305_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|313aa|up_5|NZ_CP042627.1_4255136_4256075_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|444aa|up_4|NZ_CP042627.1_4257180_4258512_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|765aa|up_3|NZ_CP042627.1_4259779_4262074_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_2|NZ_CP042627.1_4262087_4262477_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_1|NZ_CP042627.1_4262548_4263913_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|450aa|up_0|NZ_CP042627.1_4264187_4265537_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|55aa|down_0|NZ_CP042627.1_4267068_4267233_-	NA	NA|299aa|down_1|NZ_CP042627.1_4268060_4268957_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_2|NZ_CP042627.1_4269007_4269364_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_3|NZ_CP042627.1_4269605_4269971_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|161aa|down_4|NZ_CP042627.1_4271318_4271801_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|135aa|down_5|NZ_CP042627.1_4272186_4272591_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|123aa|down_6|NZ_CP042627.1_4272935_4273304_-	pfam06476, DUF1090, Protein of unknown function (DUF1090)	NA|221aa|down_7|NZ_CP042627.1_4273838_4274501_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|471aa|down_8|NZ_CP042627.1_4277534_4278947_+	pfam02614, UxaC, Glucuronate isomerase	NA|338aa|down_9|NZ_CP042627.1_4283957_4284971_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_007998085.1_ASM799808v1	NZ_CP042627	Escherichia coli strain NCYU-25-82 chromosome, complete genome	8	4681217-4681917	6,1,3	CRISPRCasFinder,CRT,PILER-CR	no	cas7,cse2gr11	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,27,29	0	0	NA	NA	I-E:I-E:I-E	11,11,10	11	TypeI-E	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA,NA|47aa|down_8|NZ_CP042627.1_4708698_4708839_+	NA|198aa|up_9|NZ_CP042627.1_4667529_4668123_-	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]	NA|136aa|up_8|NZ_CP042627.1_4668269_4668677_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|331aa|up_7|NZ_CP042627.1_4668797_4669790_-	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated	NA|380aa|up_6|NZ_CP042627.1_4669852_4670992_-	PRK10871, nlpD, murein hydrolase activator NlpD	NA|254aa|up_5|NZ_CP042627.1_4671752_4672514_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|237aa|up_4|NZ_CP042627.1_4674021_4674732_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_3|NZ_CP042627.1_4674750_4675062_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|202aa|up_2|NZ_CP042627.1_4675627_4676233_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_1|NZ_CP042627.1_4676232_4677660_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|403aa|up_0|NZ_CP042627.1_4679896_4681105_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas7|359aa|down_0|NZ_CP042627.1_4684520_4685597_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_1|NZ_CP042627.1_4685609_4686092_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|245aa|down_2|NZ_CP042627.1_4691028_4691763_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_3|NZ_CP042627.1_4691836_4693549_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_4|NZ_CP042627.1_4693548_4695348_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|87aa|down_5|NZ_CP042627.1_4697368_4697629_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|down_6|NZ_CP042627.1_4697645_4698221_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|262aa|down_7|NZ_CP042627.1_4702934_4703720_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|47aa|down_8|NZ_CP042627.1_4708698_4708839_+	NA	NA|291aa|down_9|NZ_CP042627.1_4708852_4709725_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
GCF_007998085.1_ASM799808v1	NZ_CP042627	Escherichia coli strain NCYU-25-82 chromosome, complete genome	9	4707462-4707550	7	CRISPRCasFinder	no		DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	Orphan	GGTTTATCCCCGCTGGCGCGGGGAACTC	28	1	3	4707490-4707522|4707490-4707522|4707490-4707522	NZ_CP042630.1_85828-85796|NZ_CP042629.1_89757-89725|NZ_CP042631.1_91261-91293	I-E	1	1	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA,NA|47aa|down_0|NZ_CP042627.1_4708698_4708839_+	NA|476aa|up_9|NZ_CP042627.1_4676232_4677660_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|403aa|up_8|NZ_CP042627.1_4679896_4681105_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas7|359aa|up_7|NZ_CP042627.1_4684520_4685597_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|up_6|NZ_CP042627.1_4685609_4686092_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|245aa|up_5|NZ_CP042627.1_4691028_4691763_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_4|NZ_CP042627.1_4691836_4693549_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_3|NZ_CP042627.1_4693548_4695348_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|87aa|up_2|NZ_CP042627.1_4697368_4697629_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_1|NZ_CP042627.1_4697645_4698221_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|262aa|up_0|NZ_CP042627.1_4702934_4703720_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|47aa|down_0|NZ_CP042627.1_4708698_4708839_+	NA	NA|291aa|down_1|NZ_CP042627.1_4708852_4709725_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|112aa|down_2|NZ_CP042627.1_4713899_4714235_-	PRK09907, PRK09907, endoribonuclease MazF	NA|69aa|down_3|NZ_CP042627.1_4714234_4714441_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|447aa|down_4|NZ_CP042627.1_4721189_4722530_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|down_5|NZ_CP042627.1_4722550_4723891_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|150aa|down_6|NZ_CP042627.1_4725678_4726128_-	PRK08105, PRK08105, flavodoxin; Provisional	NA|110aa|down_7|NZ_CP042627.1_4726927_4727257_-	COG3098, COG3098, Uncharacterized protein conserved in bacteria [Function unknown]	NA|182aa|down_8|NZ_CP042627.1_4727877_4728423_-	PRK04968, PRK04968, SecY interacting protein Syd; Provisional	NA|283aa|down_9|NZ_CP042627.1_4728490_4729339_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional
GCF_007998085.1_ASM799808v1	NZ_CP042629	Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-2, complete sequence	1	12628-12740	1	CRISPRCasFinder	no			Orphan	TAAATCTGTCCCCTTTTGACCATAAATCTGTCCCT	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA|44aa|up_9|NZ_CP042629.1_1433_1565_-,NA|122aa|up_6|NZ_CP042629.1_3801_4167_-,NA|83aa|up_5|NZ_CP042629.1_5743_5992_-,NA|83aa|up_3|NZ_CP042629.1_6914_7163_+,NA|63aa|up_1|NZ_CP042629.1_10270_10459_+,NA|68aa|down_0|NZ_CP042629.1_13632_13836_+,NA|108aa|down_1|NZ_CP042629.1_13986_14310_+,NA|75aa|down_2|NZ_CP042629.1_14350_14575_+,NA|89aa|down_4|NZ_CP042629.1_14945_15212_+,NA|110aa|down_6|NZ_CP042629.1_15884_16214_+,NA|93aa|down_7|NZ_CP042629.1_16271_16550_+	NA|44aa|up_9|NZ_CP042629.1_1433_1565_-	NA	NA|95aa|up_8|NZ_CP042629.1_1773_2058_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|92aa|up_7|NZ_CP042629.1_2057_2333_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|122aa|up_6|NZ_CP042629.1_3801_4167_-	NA	NA|83aa|up_5|NZ_CP042629.1_5743_5992_-	NA	NA|148aa|up_4|NZ_CP042629.1_6415_6859_-	COG3692, COG3692, Uncharacterized protein conserved in bacteria [Function unknown]	NA|83aa|up_3|NZ_CP042629.1_6914_7163_+	NA	NA|113aa|up_2|NZ_CP042629.1_8965_9304_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|63aa|up_1|NZ_CP042629.1_10270_10459_+	NA	NA|400aa|up_0|NZ_CP042629.1_10468_11668_+	pfam04986, Y2_Tnp, Putative transposase	NA|68aa|down_0|NZ_CP042629.1_13632_13836_+	NA	NA|108aa|down_1|NZ_CP042629.1_13986_14310_+	NA	NA|75aa|down_2|NZ_CP042629.1_14350_14575_+	NA	NA|75aa|down_3|NZ_CP042629.1_14670_14895_+	cd04702, ASRGL1_like, Metazoan L-Asparaginase type 2	NA|89aa|down_4|NZ_CP042629.1_14945_15212_+	NA	NA|81aa|down_5|NZ_CP042629.1_15201_15444_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|110aa|down_6|NZ_CP042629.1_15884_16214_+	NA	NA|93aa|down_7|NZ_CP042629.1_16271_16550_+	NA	NA|61aa|down_8|NZ_CP042629.1_16976_17159_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|146aa|down_9|NZ_CP042629.1_17183_17621_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system
GCF_007998085.1_ASM799808v1	NZ_CP042633	Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-6, complete sequence	1	38873-38992	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,csa3,PD-DExK,WYL,cas14j,cas7,cse2gr11,cas3	NA|91aa|up_8|NZ_CP042633.1_13465_13738_-,NA|142aa|up_7|NZ_CP042633.1_13731_14157_+,NA|122aa|up_4|NZ_CP042633.1_30639_31005_-,NA|88aa|up_2|NZ_CP042633.1_33192_33456_-,NA|102aa|up_0|NZ_CP042633.1_36486_36792_+,NA|61aa|down_0|NZ_CP042633.1_41721_41904_+,NA|76aa|down_3|NZ_CP042633.1_43523_43751_+,NA|94aa|down_6|NZ_CP042633.1_50213_50495_+,NA|60aa|down_7|NZ_CP042633.1_52317_52497_-,NA|74aa|down_8|NZ_CP042633.1_53138_53360_+	NA|403aa|up_9|NZ_CP042633.1_12276_13485_-	pfam04986, Y2_Tnp, Putative transposase	NA|91aa|up_8|NZ_CP042633.1_13465_13738_-	NA	NA|142aa|up_7|NZ_CP042633.1_13731_14157_+	NA	NA|193aa|up_6|NZ_CP042633.1_15190_15769_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|169aa|up_5|NZ_CP042633.1_25332_25839_-	pfam02794, HlyC, RTX toxin acyltransferase family	NA|122aa|up_4|NZ_CP042633.1_30639_31005_-	NA	NA|158aa|up_3|NZ_CP042633.1_31427_31901_-	COG3692, COG3692, Uncharacterized protein conserved in bacteria [Function unknown]	NA|88aa|up_2|NZ_CP042633.1_33192_33456_-	NA	NA|94aa|up_1|NZ_CP042633.1_35665_35947_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|102aa|up_0|NZ_CP042633.1_36486_36792_+	NA	NA|61aa|down_0|NZ_CP042633.1_41721_41904_+	NA	NA|232aa|down_1|NZ_CP042633.1_41847_42543_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|272aa|down_2|NZ_CP042633.1_42693_43509_+	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|76aa|down_3|NZ_CP042633.1_43523_43751_+	NA	NA|86aa|down_4|NZ_CP042633.1_46265_46523_+	PRK11347, PRK11347, antitoxin ChpS; Provisional	NA|134aa|down_5|NZ_CP042633.1_46455_46857_+	PRK09812, PRK09812, type II toxin-antitoxin system ChpB family toxin	NA|94aa|down_6|NZ_CP042633.1_50213_50495_+	NA	NA|60aa|down_7|NZ_CP042633.1_52317_52497_-	NA	NA|74aa|down_8|NZ_CP042633.1_53138_53360_+	NA	NA|145aa|down_9|NZ_CP042633.1_53373_53808_+	pfam07128, DUF1380, Protein of unknown function (DUF1380)
