assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007997855.1_ASM799785v1	NZ_CP042599	Escherichia coli strain NCYU-29-69 chromosome, complete genome	1	890249-890372	1	CRISPRCasFinder	no	DEDDh	cas14j,DEDDh,cas3,RT,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas14j,DEDDh,cas3,RT,csa3	NA,NA|30aa|down_4|NZ_CP042599.1_899270_899360_+	NA|123aa|up_9|NZ_CP042599.1_872423_872792_+	PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional	NA|249aa|up_8|NZ_CP042599.1_874296_875043_+	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed	NA|139aa|up_7|NZ_CP042599.1_877518_877935_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|471aa|up_6|NZ_CP042599.1_879698_881111_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_5|NZ_CP042599.1_881669_881879_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_4|NZ_CP042599.1_882334_882961_+	PRK09898, PRK09898, ferredoxin-like protein	NA|154aa|up_3|NZ_CP042599.1_882897_883359_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_2|NZ_CP042599.1_885089_885737_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_1|NZ_CP042599.1_885800_886469_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|102aa|up_0|NZ_CP042599.1_889808_890114_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP042599.1_890688_891945_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP042599.1_891985_893359_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP042599.1_893573_894215_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|311aa|down_3|NZ_CP042599.1_897018_897951_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|30aa|down_4|NZ_CP042599.1_899270_899360_+	NA	NA|390aa|down_5|NZ_CP042599.1_899524_900694_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|276aa|down_6|NZ_CP042599.1_901549_902377_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|116aa|down_7|NZ_CP042599.1_902711_903059_+	PRK10824, PRK10824, Grx4 family monothiol glutaredoxin	DEDDh|216aa|down_8|NZ_CP042599.1_907819_908467_-	PRK05168, PRK05168, ribonuclease T; Provisional	NA|136aa|down_9|NZ_CP042599.1_908569_908977_-	PRK10291, PRK10291, glyoxalase I; Provisional
GCF_007997855.1_ASM799785v1	NZ_CP042599	Escherichia coli strain NCYU-29-69 chromosome, complete genome	2	1706663-1706828	1	PILER-CR	no		cas14j,DEDDh,cas3,RT,csa3	Orphan	ATTTCTAAGCTGCCTGTACGGCAGTGAACGCGTTCGCAAAGGTTTT	46	0	0	NA	NA	I-F	2	2	Orphan	cas14j,DEDDh,cas3,RT,csa3	NA,NA|63aa|down_7|NZ_CP042599.1_1728069_1728258_+,NA|61aa|down_8|NZ_CP042599.1_1730449_1730632_+	NA|255aa|up_9|NZ_CP042599.1_1672598_1673363_-	cd07334, M48C_loiP_like, Peptidase M48C Ste24p loiP-like, integral membrane protein	NA|231aa|up_8|NZ_CP042599.1_1676174_1676867_-	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|548aa|up_7|NZ_CP042599.1_1677112_1678756_+	TIGR03549, TIGR03549, YcaO domain protein	NA|286aa|up_6|NZ_CP042599.1_1679161_1680019_+	PRK10805, PRK10805, formate transporter; Provisional	NA|209aa|up_5|NZ_CP042599.1_1686595_1687222_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|206aa|up_4|NZ_CP042599.1_1688121_1688739_-	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|204aa|up_3|NZ_CP042599.1_1694167_1694779_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|322aa|up_2|NZ_CP042599.1_1700215_1701181_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|235aa|up_1|NZ_CP042599.1_1704834_1705539_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP042599.1_1705824_1706043_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP042599.1_1707083_1709360_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|75aa|down_1|NZ_CP042599.1_1710029_1710254_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|319aa|down_2|NZ_CP042599.1_1713535_1714492_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|334aa|down_3|NZ_CP042599.1_1723314_1724316_+	PRK10534, PRK10534, L-threonine aldolase; Provisional	NA|338aa|down_4|NZ_CP042599.1_1725854_1726868_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|277aa|down_5|NZ_CP042599.1_1726864_1727695_-	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|108aa|down_6|NZ_CP042599.1_1727691_1728015_-	PRK02877, PRK02877, hypothetical protein; Provisional	NA|63aa|down_7|NZ_CP042599.1_1728069_1728258_+	NA	NA|61aa|down_8|NZ_CP042599.1_1730449_1730632_+	NA	NA|172aa|down_9|NZ_CP042599.1_1730645_1731161_+	PRK10533, PRK10533, putative lipoprotein; Provisional
GCF_007997855.1_ASM799785v1	NZ_CP042599	Escherichia coli strain NCYU-29-69 chromosome, complete genome	3	2441022-2441163	2	CRISPRCasFinder	no	RT	cas14j,DEDDh,cas3,RT,csa3	Unclear	GTTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCA	41	0	0	NA	NA	NA	1	1	Orphan	cas14j,DEDDh,cas3,RT,csa3	NA|81aa|up_5|NZ_CP042599.1_2433368_2433611_+,NA|63aa|down_2|NZ_CP042599.1_2443080_2443269_-	NA|368aa|up_9|NZ_CP042599.1_2426864_2427968_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|352aa|up_8|NZ_CP042599.1_2428255_2429311_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_7|NZ_CP042599.1_2429349_2429751_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_6|NZ_CP042599.1_2429808_2431053_-	PRK05077, frsA, esterase FrsA	NA|81aa|up_5|NZ_CP042599.1_2433368_2433611_+	NA	NA|170aa|up_4|NZ_CP042599.1_2433627_2434137_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|205aa|up_3|NZ_CP042599.1_2434198_2434813_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|98aa|up_2|NZ_CP042599.1_2436999_2437293_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|257aa|up_1|NZ_CP042599.1_2438468_2439239_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP042599.1_2439198_2440938_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|405aa|down_0|NZ_CP042599.1_2441265_2442479_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|166aa|down_1|NZ_CP042599.1_2442637_2443135_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|63aa|down_2|NZ_CP042599.1_2443080_2443269_-	NA	NA|250aa|down_3|NZ_CP042599.1_2443311_2444061_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_4|NZ_CP042599.1_2444362_2445103_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|193aa|down_5|NZ_CP042599.1_2446045_2446624_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|158aa|down_6|NZ_CP042599.1_2449351_2449825_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|NZ_CP042599.1_2449978_2450749_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|163aa|down_8|NZ_CP042599.1_2451020_2451509_-	TIGR03765, conserved_hypothetical_protein, integrating conjugative element protein, PFL_4695 family	NA|379aa|down_9|NZ_CP042599.1_2452222_2453359_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated
GCF_007997855.1_ASM799785v1	NZ_CP042599	Escherichia coli strain NCYU-29-69 chromosome, complete genome	4	2921008-2921157	3	CRISPRCasFinder	no		cas14j,DEDDh,cas3,RT,csa3	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas14j,DEDDh,cas3,RT,csa3	NA|137aa|up_8|NZ_CP042599.1_2906515_2906926_-,NA|257aa|up_7|NZ_CP042599.1_2906964_2907735_-,NA|191aa|up_6|NZ_CP042599.1_2907816_2908389_-,NA	NA|211aa|up_9|NZ_CP042599.1_2905323_2905956_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|137aa|up_8|NZ_CP042599.1_2906515_2906926_-	NA	NA|257aa|up_7|NZ_CP042599.1_2906964_2907735_-	NA	NA|191aa|up_6|NZ_CP042599.1_2907816_2908389_-	NA	NA|340aa|up_5|NZ_CP042599.1_2909205_2910225_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|344aa|up_4|NZ_CP042599.1_2911007_2912039_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_3|NZ_CP042599.1_2912062_2912827_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|333aa|up_2|NZ_CP042599.1_2914275_2915274_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|560aa|up_1|NZ_CP042599.1_2915351_2917031_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|504aa|up_0|NZ_CP042599.1_2919459_2920971_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|362aa|down_0|NZ_CP042599.1_2921766_2922852_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|175aa|down_1|NZ_CP042599.1_2922701_2923226_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|239aa|down_2|NZ_CP042599.1_2923204_2923921_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|229aa|down_3|NZ_CP042599.1_2923932_2924619_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|168aa|down_4|NZ_CP042599.1_2926064_2926568_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_5|NZ_CP042599.1_2926613_2927030_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_6|NZ_CP042599.1_2927191_2928196_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_7|NZ_CP042599.1_2929966_2930419_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP042599.1_2930563_2931157_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|132aa|down_9|NZ_CP042599.1_2932070_2932466_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_007997855.1_ASM799785v1	NZ_CP042599	Escherichia coli strain NCYU-29-69 chromosome, complete genome	5	4646873-4647449	2,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas14j,DEDDh,cas3,RT,csa3	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas14j,DEDDh,cas3,RT,csa3	NA,NA	NA|423aa|up_9|NZ_CP042599.1_4613691_4614960_-	PRK10133, PRK10133, L-fucose:H+ symporter permease	NA|216aa|up_8|NZ_CP042599.1_4615555_4616203_+	PRK08087, PRK08087, L-fuculose-phosphate aldolase	NA|383aa|up_7|NZ_CP042599.1_4616230_4617379_+	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional	NA|252aa|up_6|NZ_CP042599.1_4617483_4618239_-	PRK09482, PRK09482, flap endonuclease-like protein; Provisional	NA|455aa|up_5|NZ_CP042599.1_4621619_4622984_-	pfam11892, DUF3412, Domain of unknown function (DUF3412)	NA|283aa|up_4|NZ_CP042599.1_4623095_4623944_-	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|182aa|up_3|NZ_CP042599.1_4624011_4624557_+	PRK04968, PRK04968, SecY interacting protein Syd; Provisional	NA|110aa|up_2|NZ_CP042599.1_4625177_4625507_+	COG3098, COG3098, Uncharacterized protein conserved in bacteria [Function unknown]	NA|383aa|up_1|NZ_CP042599.1_4643015_4644164_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|up_0|NZ_CP042599.1_4644178_4645072_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|493aa|down_0|NZ_CP042599.1_4648088_4649567_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|184aa|down_1|NZ_CP042599.1_4652041_4652593_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|287aa|down_2|NZ_CP042599.1_4655678_4656539_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_3|NZ_CP042599.1_4656687_4657263_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_4|NZ_CP042599.1_4657279_4657540_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|245aa|down_5|NZ_CP042599.1_4663145_4663880_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_6|NZ_CP042599.1_4664144_4664297_+	pfam01848, HOK_GEF, Hok/gef family	cas3|200aa|down_7|NZ_CP042599.1_4666624_4667224_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|346aa|down_8|NZ_CP042599.1_4674294_4675332_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_9|NZ_CP042599.1_4675583_4676492_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD
GCF_007997855.1_ASM799785v1	NZ_CP042599	Escherichia coli strain NCYU-29-69 chromosome, complete genome	6	4673149-4674274	5,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas14j,DEDDh,cas3,RT,csa3	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,18,15	18	Unclear	cas14j,DEDDh,cas3,RT,csa3	NA,NA	NA|383aa|up_9|NZ_CP042599.1_4643015_4644164_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|up_8|NZ_CP042599.1_4644178_4645072_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|493aa|up_7|NZ_CP042599.1_4648088_4649567_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|184aa|up_6|NZ_CP042599.1_4652041_4652593_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|287aa|up_5|NZ_CP042599.1_4655678_4656539_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_4|NZ_CP042599.1_4656687_4657263_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_3|NZ_CP042599.1_4657279_4657540_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|245aa|up_2|NZ_CP042599.1_4663145_4663880_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP042599.1_4664144_4664297_+	pfam01848, HOK_GEF, Hok/gef family	cas3|200aa|up_0|NZ_CP042599.1_4666624_4667224_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|346aa|down_0|NZ_CP042599.1_4674294_4675332_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP042599.1_4675583_4676492_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|202aa|down_2|NZ_CP042599.1_4677921_4678527_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|104aa|down_3|NZ_CP042599.1_4679092_4679404_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|160aa|down_4|NZ_CP042599.1_4680130_4680610_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_5|NZ_CP042599.1_4680606_4681656_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|331aa|down_6|NZ_CP042599.1_4684360_4685353_+	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated	NA|136aa|down_7|NZ_CP042599.1_4685473_4685881_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|219aa|down_8|NZ_CP042599.1_4688337_4688994_-	PRK09968, PRK09968, protein-serine/threonine phosphatase	NA|854aa|down_9|NZ_CP042599.1_4689987_4692549_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional
