assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007980785.1_ASM798078v1	NZ_CP017533	Mannheimia haemolytica strain 1506, complete genome	1	901383-901457	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|288aa|up_3|NZ_CP017533.1_897778_898642_+,NA|198aa|up_2|NZ_CP017533.1_898765_899359_+,NA	NA|154aa|up_9|NZ_CP017533.1_893273_893735_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017533.1_893747_894641_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017533.1_894724_895669_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017533.1_895761_896307_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017533.1_896370_896856_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017533.1_896857_897607_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017533.1_897778_898642_+	NA	NA|198aa|up_2|NZ_CP017533.1_898765_899359_+	NA	NA|68aa|up_1|NZ_CP017533.1_899821_900025_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017533.1_900024_901266_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017533.1_901669_902710_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017533.1_902863_903637_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017533.1_903785_907982_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017533.1_908036_909131_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017533.1_909217_909487_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017533.1_909550_910189_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|259aa|down_6|NZ_CP017533.1_910272_911049_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|85aa|down_7|NZ_CP017533.1_911058_911313_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_8|NZ_CP017533.1_911314_911608_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_9|NZ_CP017533.1_911674_912715_-	pfam00665, rve, Integrase core domain
GCF_007980785.1_ASM798078v1	NZ_CP017533	Mannheimia haemolytica strain 1506, complete genome	2	1125247-1125321	2	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|281aa|up_9|NZ_CP017533.1_1113415_1114258_+,NA|138aa|up_8|NZ_CP017533.1_1114372_1114786_+,NA|81aa|up_6|NZ_CP017533.1_1116107_1116350_+,NA|74aa|down_7|NZ_CP017533.1_1135073_1135295_+	NA|281aa|up_9|NZ_CP017533.1_1113415_1114258_+	NA	NA|138aa|up_8|NZ_CP017533.1_1114372_1114786_+	NA	NA|328aa|up_7|NZ_CP017533.1_1115034_1116018_+	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|81aa|up_6|NZ_CP017533.1_1116107_1116350_+	NA	NA|662aa|up_5|NZ_CP017533.1_1116822_1118808_+	pfam07514, TraI_2, Putative helicase	NA|255aa|up_4|NZ_CP017533.1_1118963_1119728_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|239aa|up_3|NZ_CP017533.1_1119770_1120487_-	pfam12686, DUF3800, Protein of unknown function (DUF3800)	NA|366aa|up_2|NZ_CP017533.1_1120816_1121914_+	pfam00665, rve, Integrase core domain	NA|564aa|up_1|NZ_CP017533.1_1122125_1123817_+	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional	NA|347aa|up_0|NZ_CP017533.1_1123993_1125034_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017533.1_1125437_1126679_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017533.1_1126678_1126882_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017533.1_1127690_1128206_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017533.1_1128360_1131189_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017533.1_1131280_1133014_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017533.1_1133255_1134188_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017533.1_1134189_1134987_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017533.1_1135073_1135295_+	NA	DinG|642aa|down_8|NZ_CP017533.1_1135477_1137403_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017533.1_1137476_1137842_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007980785.1_ASM798078v1	NZ_CP017533	Mannheimia haemolytica strain 1506, complete genome	3	1474722-1474836	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	GGATAAATCGTAATAATTTCGCCACTGT	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|269aa|up_9|NZ_CP017533.1_1466499_1467306_+,NA|116aa|up_6|NZ_CP017533.1_1469165_1469513_-,NA|60aa|down_4|NZ_CP017533.1_1477590_1477770_-,NA|93aa|down_6|NZ_CP017533.1_1480782_1481061_+	NA|269aa|up_9|NZ_CP017533.1_1466499_1467306_+	NA	NA|413aa|up_8|NZ_CP017533.1_1467488_1468727_-	PHA02561, D, tail protein; Provisional	NA|146aa|up_7|NZ_CP017533.1_1468726_1469164_-	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|116aa|up_6|NZ_CP017533.1_1469165_1469513_-	NA	NA|39aa|up_5|NZ_CP017533.1_1469576_1469693_-	pfam06528, Phage_P2_GpE, Phage P2 GpE	NA|105aa|up_4|NZ_CP017533.1_1469716_1470031_-	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|169aa|up_3|NZ_CP017533.1_1470109_1470616_-	PHA02600, FII, major tail tube protein; Provisional	NA|394aa|up_2|NZ_CP017533.1_1470624_1471806_-	PHA02560, FI, major tail sheath protein; Provisional	NA|81aa|up_1|NZ_CP017533.1_1472183_1472426_-	pfam07087, DUF1353, Protein of unknown function (DUF1353)	NA|760aa|up_0|NZ_CP017533.1_1472426_1474706_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|306aa|down_0|NZ_CP017533.1_1475327_1476245_-	PHA02568, J, baseplate assembly protein; Provisional	NA|112aa|down_1|NZ_CP017533.1_1476241_1476577_-	PHA02516, W, baseplate wedge subunit; Provisional	NA|202aa|down_2|NZ_CP017533.1_1476576_1477182_-	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector	NA|96aa|down_3|NZ_CP017533.1_1477310_1477598_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|60aa|down_4|NZ_CP017533.1_1477590_1477770_-	NA	NA|971aa|down_5|NZ_CP017533.1_1477831_1480744_-	COG3941, COG3941, Mu-like prophage protein [General function prediction only]	NA|93aa|down_6|NZ_CP017533.1_1480782_1481061_+	NA	NA|153aa|down_7|NZ_CP017533.1_1481111_1481570_-	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|162aa|down_8|NZ_CP017533.1_1481562_1482048_-	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR)	NA|74aa|down_9|NZ_CP017533.1_1482044_1482266_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein
GCF_007980785.1_ASM798078v1	NZ_CP017533	Mannheimia haemolytica strain 1506, complete genome	4	1602739-1603973	1,1,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Type I-U, Type I-U?,Type I-C	GTTTCAATTCNCAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTG,GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	31,31,32	9	10	1603638-1603674|1603772-1603807|1602970-1603006|1603173-1603206|1603173-1603206|1603506-1603539|1603572-1603606|1603639-1603674|1603773-1603807|1603840-1603873	NZ_CP017533.1_1471699-1471735|NZ_CP017533.1_1537733-1537768|NZ_CP017533.1_1521962-1521926|NZ_CP017533.1_1530139-1530106|NZ_CP017533.1_1680972-1680939|NZ_CP017533.1_1472051-1472084|NZ_CP017533.1_1472301-1472335|NZ_CP017533.1_1471700-1471735|NZ_CP017533.1_1537734-1537768|NZ_CP017533.1_2622284-2622317	NA:NA:NA	18,17,17	18	TypeI-U,TypeI-U?,TypeI-C	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA,NA|98aa|down_2|NZ_CP017533.1_1605639_1605933_-,NA|307aa|down_3|NZ_CP017533.1_1605933_1606854_-	NA|269aa|up_9|NZ_CP017533.1_1591016_1591823_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017533.1_1591824_1593015_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017533.1_1593026_1593779_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017533.1_1594004_1595537_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|134aa|up_5|NZ_CP017533.1_1595973_1596375_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017533.1_1596444_1597284_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017533.1_1597320_1598004_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017533.1_1598271_1599345_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017533.1_1599422_1600925_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017533.1_1601078_1602554_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017533.1_1604163_1604457_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017533.1_1604523_1605537_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|98aa|down_2|NZ_CP017533.1_1605639_1605933_-	NA	NA|307aa|down_3|NZ_CP017533.1_1605933_1606854_-	NA	cas4|225aa|down_4|NZ_CP017533.1_1606880_1607555_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_5|NZ_CP017533.1_1607554_1608418_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|594aa|down_6|NZ_CP017533.1_1608427_1610209_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|226aa|down_7|NZ_CP017533.1_1610230_1610908_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|139aa|down_8|NZ_CP017533.1_1611816_1612233_-	pfam01797, Y1_Tnp, Transposase IS200 like	c2c9_V-U4|379aa|down_9|NZ_CP017533.1_1612279_1613416_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
