assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007979525.1_ASM797952v1	NZ_CP017525	Mannheimia haemolytica strain 1571 chromosome, complete genome	1	1093270-1093344	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_7|NZ_CP017525.1_1103087_1103309_+	NA|186aa|up_9|NZ_CP017525.1_1080093_1080651_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017525.1_1081903_1082944_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017525.1_1083134_1083428_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017525.1_1083429_1084470_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017525.1_1084553_1085192_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017525.1_1085255_1085525_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017525.1_1085611_1086706_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017525.1_1086760_1090957_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017525.1_1091105_1091879_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017525.1_1092032_1093073_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017525.1_1093460_1094702_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017525.1_1094701_1094905_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017525.1_1095704_1096220_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017525.1_1096374_1099203_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017525.1_1099294_1101028_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017525.1_1101269_1102202_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017525.1_1102203_1103001_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017525.1_1103087_1103309_+	NA	DinG|642aa|down_8|NZ_CP017525.1_1103491_1105417_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017525.1_1105490_1105856_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007979525.1_ASM797952v1	NZ_CP017525	Mannheimia haemolytica strain 1571 chromosome, complete genome	2	1564605-1564770	1,2	PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type I-U,Type I-C, Type I-U?	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32	0	0	NA	NA	NA:NA	2,2	2	TypeI-U,TypeI-C,TypeI-U?	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|227aa|down_2|NZ_CP017525.1_1566450_1567131_+	NA|269aa|up_9|NZ_CP017525.1_1552808_1553615_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017525.1_1553616_1554807_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017525.1_1554818_1555571_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017525.1_1555796_1557329_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017525.1_1557765_1558176_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017525.1_1558245_1559085_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017525.1_1559121_1559805_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017525.1_1560072_1561146_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017525.1_1561223_1562726_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017525.1_1562879_1564355_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017525.1_1564959_1565253_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017525.1_1565319_1566333_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP017525.1_1566450_1567131_+	NA	cas4|222aa|down_3|NZ_CP017525.1_1567232_1567898_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP017525.1_1567897_1568761_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP017525.1_1568770_1570555_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP017525.1_1570551_1571229_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP017525.1_1571466_1573218_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP017525.1_1573207_1574263_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP017525.1_1574393_1576682_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_007979525.1_ASM797952v1	NZ_CP017525	Mannheimia haemolytica strain 1571 chromosome, complete genome	3	2218241-2218346	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	TGTAGAAGATCAAACCTAATCTGACAGT	28	1	3	2218269-2218318|2218269-2218318|2218269-2218318	NZ_CP017525.1_699259-699210|NZ_CP017525.1_1766006-1766055|NZ_CP017525.1_1309826-1309875	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|186aa|down_2|NZ_CP017525.1_2221763_2222321_-,NA|233aa|down_9|NZ_CP017525.1_2226611_2227310_+	NA|453aa|up_9|NZ_CP017525.1_2210034_2211393_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|412aa|up_8|NZ_CP017525.1_2211395_2212631_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|258aa|up_7|NZ_CP017525.1_2212623_2213397_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|209aa|up_6|NZ_CP017525.1_2213396_2214023_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_5|NZ_CP017525.1_2214024_2214621_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|410aa|up_4|NZ_CP017525.1_2214631_2215861_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|145aa|up_3|NZ_CP017525.1_2215972_2216407_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|98aa|up_2|NZ_CP017525.1_2216399_2216693_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|345aa|up_1|NZ_CP017525.1_2216741_2217776_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|82aa|up_0|NZ_CP017525.1_2217788_2218034_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|347aa|down_0|NZ_CP017525.1_2218376_2219417_-	pfam00665, rve, Integrase core domain	NA|498aa|down_1|NZ_CP017525.1_2219599_2221093_-	PRK10859, PRK10859, membrane-bound lytic murein transglycosylase MltF	NA|186aa|down_2|NZ_CP017525.1_2221763_2222321_-	NA	NA|284aa|down_3|NZ_CP017525.1_2222407_2223259_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|148aa|down_4|NZ_CP017525.1_2223312_2223756_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|146aa|down_5|NZ_CP017525.1_2223994_2224432_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|148aa|down_6|NZ_CP017525.1_2224425_2224869_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|249aa|down_7|NZ_CP017525.1_2224865_2225612_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|198aa|down_8|NZ_CP017525.1_2225773_2226367_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|233aa|down_9|NZ_CP017525.1_2226611_2227310_+	NA
