assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007979225.1_ASM797922v1	NZ_CP017523	Mannheimia haemolytica strain 1582 chromosome, complete genome	1	890563-890637	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|288aa|up_3|NZ_CP017523.1_886958_887822_+,NA|198aa|up_2|NZ_CP017523.1_887945_888539_+,NA|77aa|down_3|NZ_CP017523.1_893759_893990_-,NA|86aa|down_5|NZ_CP017523.1_894925_895183_-,NA|144aa|down_7|NZ_CP017523.1_896770_897202_-	NA|154aa|up_9|NZ_CP017523.1_882453_882915_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017523.1_882927_883821_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017523.1_883904_884849_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017523.1_884941_885487_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017523.1_885550_886036_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017523.1_886037_886787_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017523.1_886958_887822_+	NA	NA|198aa|up_2|NZ_CP017523.1_887945_888539_+	NA	NA|68aa|up_1|NZ_CP017523.1_889001_889205_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017523.1_889204_890446_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017523.1_890849_891890_-	pfam00665, rve, Integrase core domain	NA|244aa|down_1|NZ_CP017523.1_891888_892620_+	pfam16793, RepB_primase, RepB DNA-primase from phage plasmid	NA|185aa|down_2|NZ_CP017523.1_892937_893492_+	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|77aa|down_3|NZ_CP017523.1_893759_893990_-	NA	NA|106aa|down_4|NZ_CP017523.1_894110_894428_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|86aa|down_5|NZ_CP017523.1_894925_895183_-	NA	NA|363aa|down_6|NZ_CP017523.1_895617_896706_-	pfam13614, AAA_31, AAA domain	NA|144aa|down_7|NZ_CP017523.1_896770_897202_-	NA	NA|701aa|down_8|NZ_CP017523.1_897205_899308_-	TIGR03755, conj_TIGR03755, integrating conjugative element protein, PFL_4711 family	NA|93aa|down_9|NZ_CP017523.1_899334_899613_-	TIGR03756, conj_TIGR03756, integrating conjugative element protein, PFL_4710 family
GCF_007979225.1_ASM797922v1	NZ_CP017523	Mannheimia haemolytica strain 1582 chromosome, complete genome	2	1127083-1127157	2	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA,NA|74aa|down_7|NZ_CP017523.1_1136909_1137131_+	NA|347aa|up_9|NZ_CP017523.1_1115824_1116865_+	pfam00665, rve, Integrase core domain	NA|98aa|up_8|NZ_CP017523.1_1116931_1117225_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|85aa|up_7|NZ_CP017523.1_1117226_1117481_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|259aa|up_6|NZ_CP017523.1_1117490_1118267_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017523.1_1118350_1118989_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017523.1_1119052_1119322_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017523.1_1119408_1120503_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017523.1_1120557_1124754_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017523.1_1124902_1125676_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017523.1_1125829_1126870_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017523.1_1127273_1128515_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017523.1_1128514_1128718_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017523.1_1129526_1130042_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017523.1_1130196_1133025_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017523.1_1133116_1134850_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017523.1_1135091_1136024_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017523.1_1136025_1136823_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017523.1_1136909_1137131_+	NA	DinG|642aa|down_8|NZ_CP017523.1_1137313_1139239_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017523.1_1139312_1139678_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007979225.1_ASM797922v1	NZ_CP017523	Mannheimia haemolytica strain 1582 chromosome, complete genome	3	1656919-1658084	1,1,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Type I-C, Type I-U?,Type I-U	GTTTCAATTCNCAGCCACGCGTAGGTGGCTG,GTTTCAATTCGCAGCCACGCGTAGGTGGCTG,GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	31,31,32	9	9	1657749-1657785|1657883-1657918|1657284-1657317|1657617-1657650|1657683-1657717|1657750-1657785|1657818-1657851|1657884-1657918|1657951-1657984	NZ_CP017523.1_1524712-1524748|NZ_CP017523.1_1275697-1275662|NZ_CP017523.1_1583068-1583035|NZ_CP017523.1_1525064-1525097|NZ_CP017523.1_1525318-1525352|NZ_CP017523.1_1524713-1524748|NZ_CP017523.1_1598293-1598260|NZ_CP017523.1_1275696-1275662|NZ_CP017523.1_2627437-2627470	NA:NA:NA	17,16,16	17	TypeI-C,TypeI-U,TypeI-U?	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA,NA|98aa|down_2|NZ_CP017523.1_1659750_1660044_-,NA|307aa|down_3|NZ_CP017523.1_1660044_1660965_-,NA|154aa|down_8|NZ_CP017523.1_1667001_1667463_-	NA|269aa|up_9|NZ_CP017523.1_1645196_1646003_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017523.1_1646004_1647195_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017523.1_1647206_1647959_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017523.1_1648184_1649717_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|134aa|up_5|NZ_CP017523.1_1650153_1650555_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017523.1_1650624_1651464_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017523.1_1651500_1652184_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017523.1_1652451_1653525_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017523.1_1653602_1655105_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017523.1_1655258_1656734_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017523.1_1658274_1658568_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017523.1_1658634_1659648_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|98aa|down_2|NZ_CP017523.1_1659750_1660044_-	NA	NA|307aa|down_3|NZ_CP017523.1_1660044_1660965_-	NA	cas4|225aa|down_4|NZ_CP017523.1_1660991_1661666_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_5|NZ_CP017523.1_1661665_1662529_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|594aa|down_6|NZ_CP017523.1_1662538_1664320_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|226aa|down_7|NZ_CP017523.1_1664341_1665019_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|154aa|down_8|NZ_CP017523.1_1667001_1667463_-	NA	c2c9_V-U4|379aa|down_9|NZ_CP017523.1_1667621_1668758_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
