assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007977825.1_ASM797782v1	NZ_CP017515	Mannheimia haemolytica strain 23278 chromosome, complete genome	1	1045704-1045778	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_6|NZ_CP017515.1_1055525_1055747_+	NA|186aa|up_9|NZ_CP017515.1_1032527_1033085_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017515.1_1034337_1035378_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017515.1_1035568_1035862_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017515.1_1035863_1036904_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017515.1_1036987_1037626_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017515.1_1037689_1037959_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017515.1_1038045_1039140_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017515.1_1039194_1043391_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017515.1_1043539_1044313_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017515.1_1044466_1045507_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017515.1_1045894_1047136_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017515.1_1047135_1047339_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017515.1_1048141_1048657_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017515.1_1048811_1051640_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_4|NZ_CP017515.1_1053707_1054640_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_5|NZ_CP017515.1_1054641_1055439_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_6|NZ_CP017515.1_1055525_1055747_+	NA	DinG|642aa|down_7|NZ_CP017515.1_1055929_1057855_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_8|NZ_CP017515.1_1057928_1058294_+	PRK01821, PRK01821, hypothetical protein; Provisional	NA|229aa|down_9|NZ_CP017515.1_1058295_1058982_+	pfam04172, LrgB, LrgB-like family
GCF_007977825.1_ASM797782v1	NZ_CP017515	Mannheimia haemolytica strain 23278 chromosome, complete genome	2	1503518-1504080	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type I-C, Type I-U?,Type I-U	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	8,8,6	8	TypeI-U?,TypeI-C,TypeI-U	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|227aa|down_2|NZ_CP017515.1_1505760_1506441_+	NA|269aa|up_9|NZ_CP017515.1_1491721_1492528_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017515.1_1492529_1493720_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017515.1_1493731_1494484_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017515.1_1494709_1496242_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017515.1_1496678_1497089_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017515.1_1497158_1497998_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017515.1_1498034_1498718_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017515.1_1498985_1500059_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017515.1_1500136_1501639_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017515.1_1501792_1503268_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017515.1_1504269_1504563_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017515.1_1504629_1505643_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP017515.1_1505760_1506441_+	NA	cas4|222aa|down_3|NZ_CP017515.1_1506542_1507208_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP017515.1_1507207_1508071_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP017515.1_1508080_1509865_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP017515.1_1509861_1510539_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP017515.1_1510776_1512528_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP017515.1_1512517_1513573_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP017515.1_1513703_1515992_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_007977825.1_ASM797782v1	NZ_CP017515	Mannheimia haemolytica strain 23278 chromosome, complete genome	3	2049800-2049905	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	ACTGTCAGATTAGGTTTGATCTTCTACA	28	1	3	2049828-2049877|2049828-2049877|2049828-2049877	NZ_CP017515.1_697558-697607|NZ_CP017515.1_1706598-1706549|NZ_CP017515.1_1240136-1240087	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA	NA|104aa|up_9|NZ_CP017515.1_2035408_2035720_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|253aa|up_8|NZ_CP017515.1_2036023_2036782_+	pfam13551, HTH_29, Winged helix-turn helix	NA|347aa|up_7|NZ_CP017515.1_2036879_2037920_+	pfam00665, rve, Integrase core domain	NA|225aa|up_6|NZ_CP017515.1_2037959_2038634_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|169aa|up_5|NZ_CP017515.1_2038698_2039205_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|801aa|up_4|NZ_CP017515.1_2039379_2041782_-	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|286aa|up_3|NZ_CP017515.1_2041864_2042722_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|602aa|up_2|NZ_CP017515.1_2045970_2047776_-	pfam13687, DUF4153, Domain of unknown function (DUF4153)	NA|222aa|up_1|NZ_CP017515.1_2047979_2048645_+	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|347aa|up_0|NZ_CP017515.1_2048728_2049769_+	pfam00665, rve, Integrase core domain	NA|82aa|down_0|NZ_CP017515.1_2050111_2050357_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|345aa|down_1|NZ_CP017515.1_2050369_2051404_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|98aa|down_2|NZ_CP017515.1_2051452_2051746_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|145aa|down_3|NZ_CP017515.1_2051738_2052173_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|410aa|down_4|NZ_CP017515.1_2052284_2053514_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_5|NZ_CP017515.1_2053524_2054121_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|209aa|down_6|NZ_CP017515.1_2054122_2054749_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|258aa|down_7|NZ_CP017515.1_2054748_2055522_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|412aa|down_8|NZ_CP017515.1_2055514_2056750_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|453aa|down_9|NZ_CP017515.1_2056752_2058111_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional
