assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007977495.1_ASM797749v1	NZ_CP017513	Mannheimia haemolytica strain 23533 chromosome, complete genome	1	1045530-1045604	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_7|NZ_CP017513.1_1055347_1055569_+	NA|186aa|up_9|NZ_CP017513.1_1032353_1032911_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017513.1_1034163_1035204_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017513.1_1035394_1035688_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017513.1_1035689_1036730_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017513.1_1036813_1037452_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017513.1_1037515_1037785_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017513.1_1037871_1038966_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017513.1_1039020_1043217_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017513.1_1043365_1044139_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017513.1_1044292_1045333_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017513.1_1045720_1046962_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017513.1_1046961_1047165_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017513.1_1047964_1048480_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017513.1_1048634_1051463_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017513.1_1051554_1053288_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017513.1_1053529_1054462_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017513.1_1054463_1055261_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017513.1_1055347_1055569_+	NA	DinG|642aa|down_8|NZ_CP017513.1_1055751_1057677_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017513.1_1057750_1058116_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007977495.1_ASM797749v1	NZ_CP017513	Mannheimia haemolytica strain 23533 chromosome, complete genome	2	1498252-1498615	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type I-C, Type I-U?,Type I-U	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	5,5,5	5	TypeI-C,TypeI-U,TypeI-U?	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|227aa|down_2|NZ_CP017513.1_1500295_1500976_+	NA|269aa|up_9|NZ_CP017513.1_1486455_1487262_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017513.1_1487263_1488454_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017513.1_1488465_1489218_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017513.1_1489443_1490976_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017513.1_1491412_1491823_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017513.1_1491892_1492732_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017513.1_1492768_1493452_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017513.1_1493719_1494793_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017513.1_1494870_1496373_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017513.1_1496526_1498002_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017513.1_1498804_1499098_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017513.1_1499164_1500178_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP017513.1_1500295_1500976_+	NA	cas4|222aa|down_3|NZ_CP017513.1_1501077_1501743_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP017513.1_1501742_1502606_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP017513.1_1502615_1504400_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP017513.1_1504396_1505074_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP017513.1_1505311_1507063_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP017513.1_1507052_1508108_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP017513.1_1508238_1510527_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_007977495.1_ASM797749v1	NZ_CP017513	Mannheimia haemolytica strain 23533 chromosome, complete genome	3	2045153-2045258	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	ACTGTCAGATTAGGTTTGATCTTCTACA	28	1	3	2045181-2045230|2045181-2045230|2045181-2045230	NZ_CP017513.1_697401-697450|NZ_CP017513.1_1701111-1701062|NZ_CP017513.1_1240018-1239969	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA	NA|104aa|up_9|NZ_CP017513.1_2030761_2031073_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|253aa|up_8|NZ_CP017513.1_2031376_2032135_+	pfam13551, HTH_29, Winged helix-turn helix	NA|347aa|up_7|NZ_CP017513.1_2032232_2033273_+	pfam00665, rve, Integrase core domain	NA|225aa|up_6|NZ_CP017513.1_2033312_2033987_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|169aa|up_5|NZ_CP017513.1_2034051_2034558_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|801aa|up_4|NZ_CP017513.1_2034732_2037135_-	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|286aa|up_3|NZ_CP017513.1_2037217_2038075_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|602aa|up_2|NZ_CP017513.1_2041323_2043129_-	pfam13687, DUF4153, Domain of unknown function (DUF4153)	NA|222aa|up_1|NZ_CP017513.1_2043332_2043998_+	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|347aa|up_0|NZ_CP017513.1_2044081_2045122_+	pfam00665, rve, Integrase core domain	NA|82aa|down_0|NZ_CP017513.1_2045464_2045710_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|345aa|down_1|NZ_CP017513.1_2045722_2046757_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|98aa|down_2|NZ_CP017513.1_2046805_2047099_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|145aa|down_3|NZ_CP017513.1_2047091_2047526_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|410aa|down_4|NZ_CP017513.1_2047637_2048867_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_5|NZ_CP017513.1_2048877_2049474_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|209aa|down_6|NZ_CP017513.1_2049475_2050102_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|258aa|down_7|NZ_CP017513.1_2050101_2050875_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|412aa|down_8|NZ_CP017513.1_2050867_2052103_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|453aa|down_9|NZ_CP017513.1_2052105_2053464_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional
