assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007975225.1_ASM797522v1	NZ_CP017501	Mannheimia haemolytica strain 33041 chromosome, complete genome	1	914126-914200	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|288aa|up_3|NZ_CP017501.1_910521_911385_+,NA|198aa|up_2|NZ_CP017501.1_911508_912102_+,NA	NA|154aa|up_9|NZ_CP017501.1_906016_906478_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017501.1_906490_907384_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017501.1_907467_908412_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017501.1_908504_909050_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017501.1_909113_909599_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017501.1_909600_910350_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017501.1_910521_911385_+	NA	NA|198aa|up_2|NZ_CP017501.1_911508_912102_+	NA	NA|68aa|up_1|NZ_CP017501.1_912564_912768_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017501.1_912767_914009_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017501.1_914412_915453_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017501.1_915606_916380_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017501.1_916528_920725_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017501.1_920779_921874_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017501.1_921960_922230_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017501.1_922293_922932_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|259aa|down_6|NZ_CP017501.1_923015_923792_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|85aa|down_7|NZ_CP017501.1_923801_924056_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_8|NZ_CP017501.1_924057_924351_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_9|NZ_CP017501.1_924417_925458_-	pfam00665, rve, Integrase core domain
GCF_007975225.1_ASM797522v1	NZ_CP017501	Mannheimia haemolytica strain 33041 chromosome, complete genome	2	1137990-1138064	2	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|281aa|up_9|NZ_CP017501.1_1126158_1127001_+,NA|138aa|up_8|NZ_CP017501.1_1127115_1127529_+,NA|81aa|up_6|NZ_CP017501.1_1128850_1129093_+,NA|74aa|down_7|NZ_CP017501.1_1147816_1148038_+	NA|281aa|up_9|NZ_CP017501.1_1126158_1127001_+	NA	NA|138aa|up_8|NZ_CP017501.1_1127115_1127529_+	NA	NA|328aa|up_7|NZ_CP017501.1_1127777_1128761_+	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|81aa|up_6|NZ_CP017501.1_1128850_1129093_+	NA	NA|662aa|up_5|NZ_CP017501.1_1129565_1131551_+	pfam07514, TraI_2, Putative helicase	NA|255aa|up_4|NZ_CP017501.1_1131706_1132471_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|239aa|up_3|NZ_CP017501.1_1132513_1133230_-	pfam12686, DUF3800, Protein of unknown function (DUF3800)	NA|366aa|up_2|NZ_CP017501.1_1133559_1134657_+	pfam00665, rve, Integrase core domain	NA|564aa|up_1|NZ_CP017501.1_1134868_1136560_+	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional	NA|347aa|up_0|NZ_CP017501.1_1136736_1137777_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017501.1_1138180_1139422_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017501.1_1139421_1139625_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017501.1_1140433_1140949_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017501.1_1141103_1143932_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017501.1_1144023_1145757_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017501.1_1145998_1146931_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017501.1_1146932_1147730_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017501.1_1147816_1148038_+	NA	DinG|642aa|down_8|NZ_CP017501.1_1148220_1150146_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017501.1_1150219_1150585_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007975225.1_ASM797522v1	NZ_CP017501	Mannheimia haemolytica strain 33041 chromosome, complete genome	3	1487450-1487564	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	GGATAAATCGTAATAATTTCGCCACTGT	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|269aa|up_9|NZ_CP017501.1_1479215_1480022_+,NA|116aa|up_6|NZ_CP017501.1_1481881_1482229_-,NA|93aa|down_5|NZ_CP017501.1_1493510_1493789_+	NA|269aa|up_9|NZ_CP017501.1_1479215_1480022_+	NA	NA|413aa|up_8|NZ_CP017501.1_1480204_1481443_-	PHA02561, D, tail protein; Provisional	NA|146aa|up_7|NZ_CP017501.1_1481442_1481880_-	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|116aa|up_6|NZ_CP017501.1_1481881_1482229_-	NA	NA|39aa|up_5|NZ_CP017501.1_1482292_1482409_-	pfam06528, Phage_P2_GpE, Phage P2 GpE	NA|105aa|up_4|NZ_CP017501.1_1482432_1482747_-	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|169aa|up_3|NZ_CP017501.1_1482825_1483332_-	PHA02600, FII, major tail tube protein; Provisional	NA|394aa|up_2|NZ_CP017501.1_1483340_1484522_-	PHA02560, FI, major tail sheath protein; Provisional	NA|81aa|up_1|NZ_CP017501.1_1484911_1485154_-	pfam07087, DUF1353, Protein of unknown function (DUF1353)	NA|760aa|up_0|NZ_CP017501.1_1485154_1487434_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|306aa|down_0|NZ_CP017501.1_1488055_1488973_-	PHA02568, J, baseplate assembly protein; Provisional	NA|112aa|down_1|NZ_CP017501.1_1488969_1489305_-	PHA02516, W, baseplate wedge subunit; Provisional	NA|202aa|down_2|NZ_CP017501.1_1489304_1489910_-	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector	NA|96aa|down_3|NZ_CP017501.1_1490038_1490326_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|971aa|down_4|NZ_CP017501.1_1490559_1493472_-	COG3941, COG3941, Mu-like prophage protein [General function prediction only]	NA|93aa|down_5|NZ_CP017501.1_1493510_1493789_+	NA	NA|153aa|down_6|NZ_CP017501.1_1493839_1494298_-	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|162aa|down_7|NZ_CP017501.1_1494290_1494776_-	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR)	NA|74aa|down_8|NZ_CP017501.1_1494772_1494994_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|152aa|down_9|NZ_CP017501.1_1495142_1495598_-	TIGR03495, Probable_spanin_inner_membrane_subunit, phage lysis regulatory protein, LysB family
GCF_007975225.1_ASM797522v1	NZ_CP017501	Mannheimia haemolytica strain 33041 chromosome, complete genome	4	1615364-1616598	1,1,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	 Type I-U?,Type I-C,Type I-U	GTTTCAATTCNCAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTG,GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	31,31,32	8	8	1616263-1616299|1616397-1616432|1615595-1615631|1616131-1616164|1616197-1616231|1616264-1616299|1616398-1616432|1616465-1616498	NZ_CP017501.1_1484415-1484451|NZ_CP017501.1_1550403-1550438|NZ_CP017501.1_1534690-1534654|NZ_CP017501.1_1484767-1484800|NZ_CP017501.1_1485029-1485063|NZ_CP017501.1_1484416-1484451|NZ_CP017501.1_1550404-1550438|NZ_CP017501.1_2633263-2633296	NA:NA:NA	18,17,17	18	TypeI-U?,TypeI-C,TypeI-U	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA,NA|98aa|down_2|NZ_CP017501.1_1618264_1618558_-,NA|307aa|down_3|NZ_CP017501.1_1618558_1619479_-,NA|154aa|down_8|NZ_CP017501.1_1625515_1625977_-	NA|269aa|up_9|NZ_CP017501.1_1603641_1604448_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017501.1_1604449_1605640_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017501.1_1605651_1606404_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017501.1_1606629_1608162_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|134aa|up_5|NZ_CP017501.1_1608598_1609000_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017501.1_1609069_1609909_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017501.1_1609945_1610629_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017501.1_1610896_1611970_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017501.1_1612047_1613550_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017501.1_1613703_1615179_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017501.1_1616788_1617082_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017501.1_1617148_1618162_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|98aa|down_2|NZ_CP017501.1_1618264_1618558_-	NA	NA|307aa|down_3|NZ_CP017501.1_1618558_1619479_-	NA	cas4|225aa|down_4|NZ_CP017501.1_1619505_1620180_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_5|NZ_CP017501.1_1620179_1621043_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|594aa|down_6|NZ_CP017501.1_1621052_1622834_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|226aa|down_7|NZ_CP017501.1_1622855_1623533_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|154aa|down_8|NZ_CP017501.1_1625515_1625977_-	NA	c2c9_V-U4|379aa|down_9|NZ_CP017501.1_1626135_1627272_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
