assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007974745.1_ASM797474v1	NZ_CP017498	Mannheimia haemolytica strain 33980 chromosome, complete genome	1	1100951-1101025	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_7|NZ_CP017498.1_1110768_1110990_+	NA|186aa|up_9|NZ_CP017498.1_1087774_1088332_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017498.1_1089584_1090625_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017498.1_1090815_1091109_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017498.1_1091110_1092151_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017498.1_1092234_1092873_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017498.1_1092936_1093206_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017498.1_1093292_1094387_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017498.1_1094441_1098638_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017498.1_1098786_1099560_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017498.1_1099713_1100754_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017498.1_1101141_1102383_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017498.1_1102382_1102586_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017498.1_1103385_1103901_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017498.1_1104055_1106884_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017498.1_1106975_1108709_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017498.1_1108950_1109883_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017498.1_1109884_1110682_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017498.1_1110768_1110990_+	NA	DinG|642aa|down_8|NZ_CP017498.1_1111172_1113098_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017498.1_1113171_1113537_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007974745.1_ASM797474v1	NZ_CP017498	Mannheimia haemolytica strain 33980 chromosome, complete genome	2	1522690-1523252	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	 Type I-U?,Type I-U,Type I-C	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	8,8,8	8	TypeI-U?,TypeI-U,TypeI-C	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|227aa|down_2|NZ_CP017498.1_1524932_1525613_+	NA|269aa|up_9|NZ_CP017498.1_1510893_1511700_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017498.1_1511701_1512892_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017498.1_1512903_1513656_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017498.1_1513881_1515414_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017498.1_1515850_1516261_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017498.1_1516330_1517170_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017498.1_1517206_1517890_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017498.1_1518157_1519231_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017498.1_1519308_1520811_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017498.1_1520964_1522440_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017498.1_1523441_1523735_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017498.1_1523801_1524815_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP017498.1_1524932_1525613_+	NA	cas4|222aa|down_3|NZ_CP017498.1_1525714_1526380_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP017498.1_1526379_1527243_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP017498.1_1527252_1529037_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP017498.1_1529033_1529711_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP017498.1_1529948_1531700_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP017498.1_1531689_1532745_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP017498.1_1532875_1535164_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_007974745.1_ASM797474v1	NZ_CP017498	Mannheimia haemolytica strain 33980 chromosome, complete genome	3	2056626-2056731	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	ACTGTCAGATTAGGTTTGATCTTCTACA	28	1	3	2056654-2056703|2056654-2056703|2056654-2056703	NZ_CP017498.1_750724-750773|NZ_CP017498.1_1724385-1724336|NZ_CP017498.1_1297822-1297773	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA	NA|368aa|up_9|NZ_CP017498.1_2045856_2046960_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|207aa|up_8|NZ_CP017498.1_2047022_2047643_-	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]	NA|426aa|up_7|NZ_CP017498.1_2047652_2048930_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|371aa|up_6|NZ_CP017498.1_2048935_2050048_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|333aa|up_5|NZ_CP017498.1_2050150_2051149_-	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|460aa|up_4|NZ_CP017498.1_2051316_2052696_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|388aa|up_3|NZ_CP017498.1_2052812_2053976_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|104aa|up_2|NZ_CP017498.1_2054086_2054398_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|253aa|up_1|NZ_CP017498.1_2054701_2055460_+	pfam13551, HTH_29, Winged helix-turn helix	NA|346aa|up_0|NZ_CP017498.1_2055557_2056595_+	pfam00665, rve, Integrase core domain	NA|82aa|down_0|NZ_CP017498.1_2056937_2057183_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|345aa|down_1|NZ_CP017498.1_2057195_2058230_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|98aa|down_2|NZ_CP017498.1_2058278_2058572_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|145aa|down_3|NZ_CP017498.1_2058564_2058999_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|410aa|down_4|NZ_CP017498.1_2059110_2060340_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_5|NZ_CP017498.1_2060350_2060947_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|209aa|down_6|NZ_CP017498.1_2060948_2061575_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|258aa|down_7|NZ_CP017498.1_2061574_2062348_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|412aa|down_8|NZ_CP017498.1_2062340_2063576_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|453aa|down_9|NZ_CP017498.1_2063578_2064937_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional
