assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007974025.1_ASM797402v1	NZ_CP017488	Mannheimia haemolytica strain 39373 chromosome, complete genome	1	1046431-1046505	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_7|NZ_CP017488.1_1056248_1056470_+	NA|186aa|up_9|NZ_CP017488.1_1033254_1033812_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017488.1_1035064_1036105_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017488.1_1036295_1036589_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017488.1_1036590_1037631_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017488.1_1037714_1038353_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017488.1_1038416_1038686_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017488.1_1038772_1039867_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017488.1_1039921_1044118_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017488.1_1044266_1045040_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017488.1_1045193_1046234_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017488.1_1046621_1047863_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017488.1_1047862_1048066_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017488.1_1048865_1049381_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017488.1_1049535_1052364_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017488.1_1052455_1054189_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017488.1_1054430_1055363_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017488.1_1055364_1056162_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017488.1_1056248_1056470_+	NA	DinG|642aa|down_8|NZ_CP017488.1_1056652_1058578_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017488.1_1058651_1059017_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007974025.1_ASM797402v1	NZ_CP017488	Mannheimia haemolytica strain 39373 chromosome, complete genome	2	1500341-1501168	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	 Type I-U?,Type I-U,Type I-C	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	12,12,12	12	TypeI-U?,TypeI-U,TypeI-C	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|227aa|down_2|NZ_CP017488.1_1502848_1503529_+	NA|269aa|up_9|NZ_CP017488.1_1488544_1489351_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017488.1_1489352_1490543_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017488.1_1490554_1491307_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017488.1_1491532_1493065_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017488.1_1493501_1493912_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017488.1_1493981_1494821_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017488.1_1494857_1495541_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017488.1_1495808_1496882_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017488.1_1496959_1498462_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017488.1_1498615_1500091_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017488.1_1501357_1501651_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017488.1_1501717_1502731_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP017488.1_1502848_1503529_+	NA	cas4|222aa|down_3|NZ_CP017488.1_1503630_1504296_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP017488.1_1504295_1505159_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP017488.1_1505168_1506953_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP017488.1_1506949_1507627_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP017488.1_1507864_1509616_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP017488.1_1509605_1510661_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP017488.1_1510791_1513080_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_007974025.1_ASM797402v1	NZ_CP017488	Mannheimia haemolytica strain 39373 chromosome, complete genome	3	2126682-2126787	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	TGTAGAAGATCAAACCTAATCTGACAGT	28	1	3	2126710-2126759|2126710-2126759|2126710-2126759	NZ_CP017488.1_697596-697547|NZ_CP017488.1_1703621-1703670|NZ_CP017488.1_1240850-1240899	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA	NA|453aa|up_9|NZ_CP017488.1_2118475_2119834_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|412aa|up_8|NZ_CP017488.1_2119836_2121072_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|258aa|up_7|NZ_CP017488.1_2121064_2121838_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|209aa|up_6|NZ_CP017488.1_2121837_2122464_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_5|NZ_CP017488.1_2122465_2123062_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|410aa|up_4|NZ_CP017488.1_2123072_2124302_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|145aa|up_3|NZ_CP017488.1_2124413_2124848_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|98aa|up_2|NZ_CP017488.1_2124840_2125134_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|345aa|up_1|NZ_CP017488.1_2125182_2126217_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|82aa|up_0|NZ_CP017488.1_2126229_2126475_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|347aa|down_0|NZ_CP017488.1_2126817_2127858_-	pfam00665, rve, Integrase core domain	NA|335aa|down_1|NZ_CP017488.1_2128110_2129115_-	PRK01713, PRK01713, ornithine carbamoyltransferase; Provisional	NA|280aa|down_2|NZ_CP017488.1_2129202_2130042_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|445aa|down_3|NZ_CP017488.1_2130230_2131565_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|137aa|down_4|NZ_CP017488.1_2131644_2132055_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|226aa|down_5|NZ_CP017488.1_2132177_2132855_-	PRK11595, PRK11595, DNA utilization protein GntX; Provisional	NA|271aa|down_6|NZ_CP017488.1_2132972_2133785_+	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|90aa|down_7|NZ_CP017488.1_2133832_2134102_-	pfam00892, EamA, EamA-like transporter family	NA|226aa|down_8|NZ_CP017488.1_2134074_2134752_-	pfam00892, EamA, EamA-like transporter family	NA|86aa|down_9|NZ_CP017488.1_2134853_2135111_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated
