assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007973645.1_ASM797364v1	NZ_CP017486	Mannheimia haemolytica strain 39394 chromosome, complete genome	1	1045364-1045438	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_7|NZ_CP017486.1_1055181_1055403_+	NA|186aa|up_9|NZ_CP017486.1_1032187_1032745_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017486.1_1033997_1035038_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017486.1_1035228_1035522_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017486.1_1035523_1036564_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017486.1_1036647_1037286_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017486.1_1037349_1037619_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017486.1_1037705_1038800_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017486.1_1038854_1043051_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017486.1_1043199_1043973_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017486.1_1044126_1045167_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017486.1_1045554_1046796_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017486.1_1046795_1046999_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017486.1_1047798_1048314_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017486.1_1048468_1051297_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017486.1_1051388_1053122_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017486.1_1053363_1054296_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017486.1_1054297_1055095_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017486.1_1055181_1055403_+	NA	DinG|642aa|down_8|NZ_CP017486.1_1055585_1057511_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017486.1_1057584_1057950_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007973645.1_ASM797364v1	NZ_CP017486	Mannheimia haemolytica strain 39394 chromosome, complete genome	2	1498107-1499000	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	 Type I-U?,Type I-C,Type I-U	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	13,13,13	13	TypeI-U?,TypeI-C,TypeI-U	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA	NA|269aa|up_9|NZ_CP017486.1_1486310_1487117_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017486.1_1487118_1488309_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017486.1_1488320_1489073_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017486.1_1489298_1490831_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017486.1_1491267_1491678_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017486.1_1491747_1492587_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017486.1_1492623_1493307_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017486.1_1493574_1494648_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017486.1_1494725_1496228_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017486.1_1496381_1497857_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017486.1_1499189_1499483_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017486.1_1499549_1500563_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|222aa|down_2|NZ_CP017486.1_1501462_1502128_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_3|NZ_CP017486.1_1502127_1502991_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_4|NZ_CP017486.1_1503000_1504785_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_5|NZ_CP017486.1_1504781_1505459_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_6|NZ_CP017486.1_1505696_1507448_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_7|NZ_CP017486.1_1507437_1508493_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_8|NZ_CP017486.1_1508623_1510912_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|588aa|down_9|NZ_CP017486.1_1511174_1512938_+	TIGR03549, TIGR03549, YcaO domain protein
GCF_007973645.1_ASM797364v1	NZ_CP017486	Mannheimia haemolytica strain 39394 chromosome, complete genome	3	2088450-2088555	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	TGTAGAAGATCAAACCTAATCTGACAGT	28	1	3	2088478-2088527|2088478-2088527|2088478-2088527	NZ_CP017486.1_697591-697542|NZ_CP017486.1_1701488-1701537|NZ_CP017486.1_1239824-1239873	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|89aa|down_9|NZ_CP017486.1_2101227_2101494_+	NA|453aa|up_9|NZ_CP017486.1_2080243_2081602_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|412aa|up_8|NZ_CP017486.1_2081604_2082840_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|258aa|up_7|NZ_CP017486.1_2082832_2083606_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|209aa|up_6|NZ_CP017486.1_2083605_2084232_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_5|NZ_CP017486.1_2084233_2084830_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|410aa|up_4|NZ_CP017486.1_2084840_2086070_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|145aa|up_3|NZ_CP017486.1_2086181_2086616_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|98aa|up_2|NZ_CP017486.1_2086608_2086902_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|345aa|up_1|NZ_CP017486.1_2086950_2087985_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|82aa|up_0|NZ_CP017486.1_2087997_2088243_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|347aa|down_0|NZ_CP017486.1_2088585_2089626_-	pfam00665, rve, Integrase core domain	NA|187aa|down_1|NZ_CP017486.1_2089788_2090349_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|981aa|down_2|NZ_CP017486.1_2090494_2093437_-	PRK10811, rne, ribonuclease E; Reviewed	NA|282aa|down_3|NZ_CP017486.1_2093893_2094739_-	pfam00857, Isochorismatase, Isochorismatase family	NA|275aa|down_4|NZ_CP017486.1_2094865_2095690_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|488aa|down_5|NZ_CP017486.1_2095773_2097237_-	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|325aa|down_6|NZ_CP017486.1_2097373_2098348_+	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|107aa|down_7|NZ_CP017486.1_2098399_2098720_-	TIGR00686, Protein_PhnA_homolog, alkylphosphonate utilization operon protein PhnA	NA|788aa|down_8|NZ_CP017486.1_2098860_2101224_+	PRK11642, PRK11642, ribonuclease R	NA|89aa|down_9|NZ_CP017486.1_2101227_2101494_+	NA
