assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007965105.1_ASM796510v1	NZ_CP017547	Mannheimia haemolytica strain 1329 chromosome, complete genome	1	1118589-1118663	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_7|NZ_CP017547.1_1128406_1128628_+	NA|186aa|up_9|NZ_CP017547.1_1105412_1105970_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017547.1_1107222_1108263_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017547.1_1108453_1108747_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017547.1_1108748_1109789_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017547.1_1109872_1110511_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017547.1_1110574_1110844_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017547.1_1110930_1112025_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017547.1_1112079_1116276_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017547.1_1116424_1117198_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017547.1_1117351_1118392_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017547.1_1118779_1120021_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017547.1_1120020_1120224_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017547.1_1121023_1121539_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017547.1_1121693_1124522_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017547.1_1124613_1126347_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017547.1_1126588_1127521_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017547.1_1127522_1128320_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017547.1_1128406_1128628_+	NA	DinG|642aa|down_8|NZ_CP017547.1_1128810_1130736_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017547.1_1130809_1131175_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007965105.1_ASM796510v1	NZ_CP017547	Mannheimia haemolytica strain 1329 chromosome, complete genome	2	1571340-1571967	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type I-C,Type I-U, Type I-U?	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	1	1	1571903-1571935	NZ_CP017547.1_1932317-1932349	NA:NA:NA	9,9,9	9	TypeI-C,TypeI-U?,TypeI-U	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|227aa|down_2|NZ_CP017547.1_1573647_1574328_+	NA|269aa|up_9|NZ_CP017547.1_1559543_1560350_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017547.1_1560351_1561542_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017547.1_1561553_1562306_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017547.1_1562531_1564064_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017547.1_1564500_1564911_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017547.1_1564980_1565820_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017547.1_1565856_1566540_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017547.1_1566807_1567881_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017547.1_1567958_1569461_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017547.1_1569614_1571090_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017547.1_1572156_1572450_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017547.1_1572516_1573530_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP017547.1_1573647_1574328_+	NA	cas4|222aa|down_3|NZ_CP017547.1_1574429_1575095_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP017547.1_1575094_1575958_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP017547.1_1575967_1577752_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP017547.1_1577748_1578426_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP017547.1_1578663_1580415_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP017547.1_1580404_1581460_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP017547.1_1581590_1583879_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_007965105.1_ASM796510v1	NZ_CP017547	Mannheimia haemolytica strain 1329 chromosome, complete genome	3	2169127-2169232	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	ACTGTCAGATTAGGTTTGATCTTCTACA	28	1	3	2169155-2169204|2169155-2169204|2169155-2169204	NZ_CP017547.1_697558-697607|NZ_CP017547.1_1911547-1911596|NZ_CP017547.1_1313106-1313057	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA	NA|104aa|up_9|NZ_CP017547.1_2154735_2155047_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|253aa|up_8|NZ_CP017547.1_2155350_2156109_+	pfam13551, HTH_29, Winged helix-turn helix	NA|347aa|up_7|NZ_CP017547.1_2156206_2157247_+	pfam00665, rve, Integrase core domain	NA|225aa|up_6|NZ_CP017547.1_2157286_2157961_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|169aa|up_5|NZ_CP017547.1_2158025_2158532_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|801aa|up_4|NZ_CP017547.1_2158706_2161109_-	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|286aa|up_3|NZ_CP017547.1_2161191_2162049_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|602aa|up_2|NZ_CP017547.1_2165297_2167103_-	pfam13687, DUF4153, Domain of unknown function (DUF4153)	NA|222aa|up_1|NZ_CP017547.1_2167306_2167972_+	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|347aa|up_0|NZ_CP017547.1_2168055_2169096_+	pfam00665, rve, Integrase core domain	NA|82aa|down_0|NZ_CP017547.1_2169438_2169684_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|345aa|down_1|NZ_CP017547.1_2169696_2170731_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|98aa|down_2|NZ_CP017547.1_2170779_2171073_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|145aa|down_3|NZ_CP017547.1_2171065_2171500_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|410aa|down_4|NZ_CP017547.1_2171611_2172841_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_5|NZ_CP017547.1_2172851_2173448_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|209aa|down_6|NZ_CP017547.1_2173449_2174076_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|258aa|down_7|NZ_CP017547.1_2174075_2174849_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|412aa|down_8|NZ_CP017547.1_2174841_2176077_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|453aa|down_9|NZ_CP017547.1_2176079_2177438_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional
