assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007964925.1_ASM796492v1	NZ_CP017546	Mannheimia haemolytica strain 1342 chromosome, complete genome	1	915275-915349	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|288aa|up_3|NZ_CP017546.1_911670_912534_+,NA|198aa|up_2|NZ_CP017546.1_912657_913251_+,NA	NA|154aa|up_9|NZ_CP017546.1_907165_907627_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017546.1_907639_908533_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017546.1_908616_909561_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017546.1_909653_910199_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017546.1_910262_910748_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017546.1_910749_911499_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017546.1_911670_912534_+	NA	NA|198aa|up_2|NZ_CP017546.1_912657_913251_+	NA	NA|68aa|up_1|NZ_CP017546.1_913713_913917_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017546.1_913916_915158_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017546.1_915561_916602_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017546.1_916755_917529_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017546.1_917677_921874_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017546.1_921928_923023_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017546.1_923109_923379_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017546.1_923442_924081_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|259aa|down_6|NZ_CP017546.1_924164_924941_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|85aa|down_7|NZ_CP017546.1_924950_925205_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_8|NZ_CP017546.1_925206_925500_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_9|NZ_CP017546.1_925566_926607_-	pfam00665, rve, Integrase core domain
GCF_007964925.1_ASM796492v1	NZ_CP017546	Mannheimia haemolytica strain 1342 chromosome, complete genome	2	1578320-1578434	2	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	GGATAAATCGTAATAATTTCGCCACTGT	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|269aa|up_9|NZ_CP017546.1_1570061_1570868_+,NA|116aa|up_6|NZ_CP017546.1_1572727_1573075_-,NA|60aa|down_5|NZ_CP017546.1_1582396_1582576_-,NA|93aa|down_6|NZ_CP017546.1_1585588_1585867_+	NA|269aa|up_9|NZ_CP017546.1_1570061_1570868_+	NA	NA|413aa|up_8|NZ_CP017546.1_1571050_1572289_-	PHA02561, D, tail protein; Provisional	NA|146aa|up_7|NZ_CP017546.1_1572288_1572726_-	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|116aa|up_6|NZ_CP017546.1_1572727_1573075_-	NA	NA|39aa|up_5|NZ_CP017546.1_1573138_1573255_-	pfam06528, Phage_P2_GpE, Phage P2 GpE	NA|105aa|up_4|NZ_CP017546.1_1573278_1573593_-	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|169aa|up_3|NZ_CP017546.1_1573671_1574178_-	PHA02600, FII, major tail tube protein; Provisional	NA|394aa|up_2|NZ_CP017546.1_1574186_1575368_-	PHA02560, FI, major tail sheath protein; Provisional	NA|81aa|up_1|NZ_CP017546.1_1575781_1576024_-	pfam07087, DUF1353, Protein of unknown function (DUF1353)	NA|760aa|up_0|NZ_CP017546.1_1576024_1578304_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|306aa|down_0|NZ_CP017546.1_1578925_1579843_-	PHA02568, J, baseplate assembly protein; Provisional	NA|112aa|down_1|NZ_CP017546.1_1579839_1580175_-	PHA02516, W, baseplate wedge subunit; Provisional	NA|202aa|down_2|NZ_CP017546.1_1580174_1580780_-	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector	NA|347aa|down_3|NZ_CP017546.1_1581059_1582100_+	pfam00665, rve, Integrase core domain	NA|90aa|down_4|NZ_CP017546.1_1582134_1582404_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|60aa|down_5|NZ_CP017546.1_1582396_1582576_-	NA	NA|93aa|down_6|NZ_CP017546.1_1585588_1585867_+	NA	NA|153aa|down_7|NZ_CP017546.1_1585917_1586376_-	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|162aa|down_8|NZ_CP017546.1_1586368_1586854_-	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR)	NA|74aa|down_9|NZ_CP017546.1_1586850_1587072_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein
GCF_007964925.1_ASM796492v1	NZ_CP017546	Mannheimia haemolytica strain 1342 chromosome, complete genome	3	1717702-1718803	1,1,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Type I-C,Type I-U, Type I-U?	GTTTCAATTCNCAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	31,31,32	7	7	1718601-1718637|1717933-1717969|1718469-1718502|1718535-1718569|1718602-1718637|1718670-1718703|1718736-1718771	NZ_CP017546.1_1575261-1575297|NZ_CP017546.1_1626768-1626732|NZ_CP017546.1_1575613-1575646|NZ_CP017546.1_1575899-1575933|NZ_CP017546.1_1575262-1575297|NZ_CP017546.1_2689262-2689295|NZ_CP017546.1_2695170-2695205	NA:NA:NA	16,15,15	16	TypeI-C,TypeI-U,TypeI-U?	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|98aa|up_2|NZ_CP017546.1_1713787_1714081_+,NA|98aa|down_2|NZ_CP017546.1_1720469_1720763_-,NA|307aa|down_3|NZ_CP017546.1_1720763_1721684_-,NA|154aa|down_8|NZ_CP017546.1_1727720_1728182_-	NA|1189aa|up_9|NZ_CP017546.1_1700356_1703923_+	TIGR01541, tail_length_tape, phage tail tape measure protein, lambda family	NA|110aa|up_8|NZ_CP017546.1_1703922_1704252_+	pfam05939, Phage_min_tail, Phage minor tail protein	NA|239aa|up_7|NZ_CP017546.1_1704251_1704968_+	COG4672, gp18, Phage-related protein [Function unknown]	NA|244aa|up_6|NZ_CP017546.1_1704971_1705703_+	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains	NA|210aa|up_5|NZ_CP017546.1_1705971_1706601_+	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|1244aa|up_4|NZ_CP017546.1_1706610_1710342_+	COG4733, COG4733, Phage-related protein, tail component [Function unknown]	NA|1109aa|up_3|NZ_CP017546.1_1710338_1713665_+	pfam09327, DUF1983, Domain of unknown function (DUF1983)	NA|98aa|up_2|NZ_CP017546.1_1713787_1714081_+	NA	NA|501aa|up_1|NZ_CP017546.1_1714385_1715888_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017546.1_1716041_1717517_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017546.1_1718993_1719287_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017546.1_1719353_1720367_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|98aa|down_2|NZ_CP017546.1_1720469_1720763_-	NA	NA|307aa|down_3|NZ_CP017546.1_1720763_1721684_-	NA	cas4|225aa|down_4|NZ_CP017546.1_1721710_1722385_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_5|NZ_CP017546.1_1722384_1723248_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|594aa|down_6|NZ_CP017546.1_1723257_1725039_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|226aa|down_7|NZ_CP017546.1_1725060_1725738_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|154aa|down_8|NZ_CP017546.1_1727720_1728182_-	NA	c2c9_V-U4|379aa|down_9|NZ_CP017546.1_1728340_1729477_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
