assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007964225.1_ASM796422v1	NZ_CP017542	Mannheimia haemolytica strain 1405, complete genome	1	915251-915325	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|288aa|up_3|NZ_CP017542.1_911646_912510_+,NA|198aa|up_2|NZ_CP017542.1_912633_913227_+,NA	NA|154aa|up_9|NZ_CP017542.1_907141_907603_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017542.1_907615_908509_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017542.1_908592_909537_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017542.1_909629_910175_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017542.1_910238_910724_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017542.1_910725_911475_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017542.1_911646_912510_+	NA	NA|198aa|up_2|NZ_CP017542.1_912633_913227_+	NA	NA|68aa|up_1|NZ_CP017542.1_913689_913893_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017542.1_913892_915134_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017542.1_915537_916578_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017542.1_916731_917505_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017542.1_917653_921850_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017542.1_921904_922999_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017542.1_923085_923355_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017542.1_923418_924057_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|259aa|down_6|NZ_CP017542.1_924140_924917_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|85aa|down_7|NZ_CP017542.1_924926_925181_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_8|NZ_CP017542.1_925182_925476_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_9|NZ_CP017542.1_925542_926583_-	pfam00665, rve, Integrase core domain
GCF_007964225.1_ASM796422v1	NZ_CP017542	Mannheimia haemolytica strain 1405, complete genome	2	1578372-1578486	2	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	GGATAAATCGTAATAATTTCGCCACTGT	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|116aa|up_7|NZ_CP017542.1_1572747_1573095_-,NA|85aa|up_2|NZ_CP017542.1_1575589_1575844_-,NA|60aa|down_5|NZ_CP017542.1_1582448_1582628_-,NA|93aa|down_6|NZ_CP017542.1_1585640_1585919_+	NA|413aa|up_9|NZ_CP017542.1_1571070_1572309_-	PHA02561, D, tail protein; Provisional	NA|146aa|up_8|NZ_CP017542.1_1572308_1572746_-	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|116aa|up_7|NZ_CP017542.1_1572747_1573095_-	NA	NA|39aa|up_6|NZ_CP017542.1_1573158_1573275_-	pfam06528, Phage_P2_GpE, Phage P2 GpE	NA|105aa|up_5|NZ_CP017542.1_1573298_1573613_-	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|169aa|up_4|NZ_CP017542.1_1573691_1574198_-	PHA02600, FII, major tail tube protein; Provisional	NA|394aa|up_3|NZ_CP017542.1_1574206_1575388_-	PHA02560, FI, major tail sheath protein; Provisional	NA|85aa|up_2|NZ_CP017542.1_1575589_1575844_-	NA	NA|81aa|up_1|NZ_CP017542.1_1575833_1576076_-	pfam07087, DUF1353, Protein of unknown function (DUF1353)	NA|760aa|up_0|NZ_CP017542.1_1576076_1578356_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|306aa|down_0|NZ_CP017542.1_1578977_1579895_-	PHA02568, J, baseplate assembly protein; Provisional	NA|112aa|down_1|NZ_CP017542.1_1579891_1580227_-	PHA02516, W, baseplate wedge subunit; Provisional	NA|202aa|down_2|NZ_CP017542.1_1580226_1580832_-	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector	NA|347aa|down_3|NZ_CP017542.1_1581111_1582152_+	pfam00665, rve, Integrase core domain	NA|90aa|down_4|NZ_CP017542.1_1582186_1582456_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|60aa|down_5|NZ_CP017542.1_1582448_1582628_-	NA	NA|93aa|down_6|NZ_CP017542.1_1585640_1585919_+	NA	NA|153aa|down_7|NZ_CP017542.1_1585969_1586428_-	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|162aa|down_8|NZ_CP017542.1_1586420_1586906_-	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR)	NA|74aa|down_9|NZ_CP017542.1_1586902_1587124_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein
GCF_007964225.1_ASM796422v1	NZ_CP017542	Mannheimia haemolytica strain 1405, complete genome	3	1717754-1718855	1,1,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	 Type I-U?,Type I-C,Type I-U	GTTTCAATTCNCAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	31,31,32	7	7	1718653-1718689|1717985-1718021|1718521-1718554|1718587-1718621|1718654-1718689|1718722-1718755|1718788-1718823	NZ_CP017542.1_1575281-1575317|NZ_CP017542.1_1626820-1626784|NZ_CP017542.1_1575633-1575666|NZ_CP017542.1_1575951-1575985|NZ_CP017542.1_1575282-1575317|NZ_CP017542.1_2696361-2696394|NZ_CP017542.1_2702269-2702304	NA:NA:NA	16,15,15	16	TypeI-U?,TypeI-C,TypeI-U	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|98aa|up_2|NZ_CP017542.1_1713839_1714133_+,NA|98aa|down_2|NZ_CP017542.1_1720521_1720815_-,NA|307aa|down_3|NZ_CP017542.1_1720815_1721736_-,NA|154aa|down_8|NZ_CP017542.1_1727772_1728234_-	NA|1189aa|up_9|NZ_CP017542.1_1700408_1703975_+	TIGR01541, tail_length_tape, phage tail tape measure protein, lambda family	NA|110aa|up_8|NZ_CP017542.1_1703974_1704304_+	pfam05939, Phage_min_tail, Phage minor tail protein	NA|239aa|up_7|NZ_CP017542.1_1704303_1705020_+	COG4672, gp18, Phage-related protein [Function unknown]	NA|244aa|up_6|NZ_CP017542.1_1705023_1705755_+	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains	NA|210aa|up_5|NZ_CP017542.1_1706023_1706653_+	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|1244aa|up_4|NZ_CP017542.1_1706662_1710394_+	COG4733, COG4733, Phage-related protein, tail component [Function unknown]	NA|1109aa|up_3|NZ_CP017542.1_1710390_1713717_+	pfam09327, DUF1983, Domain of unknown function (DUF1983)	NA|98aa|up_2|NZ_CP017542.1_1713839_1714133_+	NA	NA|501aa|up_1|NZ_CP017542.1_1714437_1715940_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017542.1_1716093_1717569_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017542.1_1719045_1719339_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017542.1_1719405_1720419_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|98aa|down_2|NZ_CP017542.1_1720521_1720815_-	NA	NA|307aa|down_3|NZ_CP017542.1_1720815_1721736_-	NA	cas4|225aa|down_4|NZ_CP017542.1_1721762_1722437_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_5|NZ_CP017542.1_1722436_1723300_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|594aa|down_6|NZ_CP017542.1_1723309_1725091_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|226aa|down_7|NZ_CP017542.1_1725112_1725790_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|154aa|down_8|NZ_CP017542.1_1727772_1728234_-	NA	c2c9_V-U4|379aa|down_9|NZ_CP017542.1_1728392_1729529_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
