assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007963885.1_ASM796388v1	NZ_CP017540	Mannheimia haemolytica strain 1451, complete genome	1	914208-914282	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|288aa|up_3|NZ_CP017540.1_910603_911467_+,NA|198aa|up_2|NZ_CP017540.1_911590_912184_+,NA|81aa|down_6|NZ_CP017540.1_923178_923421_-,NA|138aa|down_8|NZ_CP017540.1_924742_925156_-,NA|281aa|down_9|NZ_CP017540.1_925270_926113_-	NA|154aa|up_9|NZ_CP017540.1_906098_906560_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017540.1_906572_907466_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017540.1_907549_908494_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017540.1_908586_909132_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017540.1_909195_909681_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017540.1_909682_910432_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017540.1_910603_911467_+	NA	NA|198aa|up_2|NZ_CP017540.1_911590_912184_+	NA	NA|68aa|up_1|NZ_CP017540.1_912646_912850_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017540.1_912849_914091_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017540.1_914494_915535_-	pfam00665, rve, Integrase core domain	NA|564aa|down_1|NZ_CP017540.1_915711_917403_-	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional	NA|366aa|down_2|NZ_CP017540.1_917614_918712_-	pfam00665, rve, Integrase core domain	NA|239aa|down_3|NZ_CP017540.1_919041_919758_+	pfam12686, DUF3800, Protein of unknown function (DUF3800)	NA|255aa|down_4|NZ_CP017540.1_919800_920565_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|662aa|down_5|NZ_CP017540.1_920720_922706_-	pfam07514, TraI_2, Putative helicase	NA|81aa|down_6|NZ_CP017540.1_923178_923421_-	NA	NA|328aa|down_7|NZ_CP017540.1_923510_924494_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|138aa|down_8|NZ_CP017540.1_924742_925156_-	NA	NA|281aa|down_9|NZ_CP017540.1_925270_926113_-	NA
GCF_007963885.1_ASM796388v1	NZ_CP017540	Mannheimia haemolytica strain 1451, complete genome	2	1125850-1125928	2	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTTAAATATCCTAGATTAGTTTCA	25	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|144aa|up_5|NZ_CP017540.1_1121465_1121897_+,NA|86aa|up_3|NZ_CP017540.1_1123484_1123742_+,NA|77aa|up_1|NZ_CP017540.1_1124677_1124908_+,NA	NA|331aa|up_9|NZ_CP017540.1_1116644_1117637_-	PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional	NA|144aa|up_8|NZ_CP017540.1_1117654_1118086_-	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|93aa|up_7|NZ_CP017540.1_1119054_1119333_+	TIGR03756, conj_TIGR03756, integrating conjugative element protein, PFL_4710 family	NA|701aa|up_6|NZ_CP017540.1_1119359_1121462_+	TIGR03755, conj_TIGR03755, integrating conjugative element protein, PFL_4711 family	NA|144aa|up_5|NZ_CP017540.1_1121465_1121897_+	NA	NA|363aa|up_4|NZ_CP017540.1_1121961_1123050_+	pfam13614, AAA_31, AAA domain	NA|86aa|up_3|NZ_CP017540.1_1123484_1123742_+	NA	NA|106aa|up_2|NZ_CP017540.1_1124239_1124557_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|77aa|up_1|NZ_CP017540.1_1124677_1124908_+	NA	NA|185aa|up_0|NZ_CP017540.1_1125175_1125730_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|244aa|down_0|NZ_CP017540.1_1126047_1126779_-	pfam16793, RepB_primase, RepB DNA-primase from phage plasmid	NA|347aa|down_1|NZ_CP017540.1_1126777_1127818_+	pfam00665, rve, Integrase core domain	NA|98aa|down_2|NZ_CP017540.1_1127884_1128178_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|85aa|down_3|NZ_CP017540.1_1128179_1128434_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|259aa|down_4|NZ_CP017540.1_1128443_1129220_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|down_5|NZ_CP017540.1_1129303_1129942_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|down_6|NZ_CP017540.1_1130005_1130275_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|down_7|NZ_CP017540.1_1130361_1131456_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|down_8|NZ_CP017540.1_1131510_1135707_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|down_9|NZ_CP017540.1_1135855_1136629_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
GCF_007963885.1_ASM796388v1	NZ_CP017540	Mannheimia haemolytica strain 1451, complete genome	3	1138036-1138110	3	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA,NA|74aa|down_7|NZ_CP017540.1_1147862_1148084_+	NA|347aa|up_9|NZ_CP017540.1_1126777_1127818_+	pfam00665, rve, Integrase core domain	NA|98aa|up_8|NZ_CP017540.1_1127884_1128178_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|85aa|up_7|NZ_CP017540.1_1128179_1128434_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|259aa|up_6|NZ_CP017540.1_1128443_1129220_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017540.1_1129303_1129942_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017540.1_1130005_1130275_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017540.1_1130361_1131456_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017540.1_1131510_1135707_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017540.1_1135855_1136629_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017540.1_1136782_1137823_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017540.1_1138226_1139468_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017540.1_1139467_1139671_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017540.1_1140479_1140995_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017540.1_1141149_1143978_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017540.1_1144069_1145803_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017540.1_1146044_1146977_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017540.1_1146978_1147776_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017540.1_1147862_1148084_+	NA	DinG|642aa|down_8|NZ_CP017540.1_1148266_1150192_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017540.1_1150265_1150631_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007963885.1_ASM796388v1	NZ_CP017540	Mannheimia haemolytica strain 1451, complete genome	4	1611967-1612999	1,1,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	 Type I-U?,Type I-U,Type I-C	GTTTCAATTCNCAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTG,GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	31,31,32	5	5	1612797-1612833|1612665-1612698|1612731-1612765|1612798-1612833|1612932-1612967	NZ_CP017540.1_1533050-1533086|NZ_CP017540.1_1533402-1533435|NZ_CP017540.1_1533712-1533746|NZ_CP017540.1_1533051-1533086|NZ_CP017540.1_2635460-2635495	NA:NA:NA	15,14,14	15	TypeI-U?,TypeI-U,TypeI-C	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA,NA|98aa|down_2|NZ_CP017540.1_1614665_1614959_-,NA|307aa|down_3|NZ_CP017540.1_1614959_1615880_-,NA|154aa|down_8|NZ_CP017540.1_1621938_1622400_-	NA|269aa|up_9|NZ_CP017540.1_1600244_1601051_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017540.1_1601052_1602243_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017540.1_1602254_1603007_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017540.1_1603232_1604765_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|134aa|up_5|NZ_CP017540.1_1605201_1605603_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017540.1_1605672_1606512_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017540.1_1606548_1607232_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017540.1_1607499_1608573_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017540.1_1608650_1610153_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017540.1_1610306_1611782_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017540.1_1613189_1613483_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017540.1_1613549_1614563_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|98aa|down_2|NZ_CP017540.1_1614665_1614959_-	NA	NA|307aa|down_3|NZ_CP017540.1_1614959_1615880_-	NA	cas4|225aa|down_4|NZ_CP017540.1_1615906_1616581_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_5|NZ_CP017540.1_1616580_1617444_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|594aa|down_6|NZ_CP017540.1_1617453_1619235_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|226aa|down_7|NZ_CP017540.1_1619278_1619956_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|154aa|down_8|NZ_CP017540.1_1621938_1622400_-	NA	c2c9_V-U4|379aa|down_9|NZ_CP017540.1_1622558_1623695_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
