assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007923185.1_ASM792318v1	NZ_CP039378	Pediococcus pentosaceus strain SL001 chromosome, complete genome	1	239435-239540	1	CRISPRCasFinder	no		cas3,WYL,csn2,cas2,cas1,cas9,DEDDh,csa3,DinG	Orphan	CAGATGCTCTACCAACTGAGCTAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csn2,cas2,cas1,cas9,DEDDh,csa3,DinG	NA|244aa|up_1|NZ_CP039378.1_234947_235679_+,NA|63aa|down_6|NZ_CP039378.1_251486_251675_-	NA|280aa|up_9|NZ_CP039378.1_224566_225406_+	cd01171, YXKO-related, B	NA|240aa|up_8|NZ_CP039378.1_225428_226148_-	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|562aa|up_7|NZ_CP039378.1_226156_227842_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|806aa|up_6|NZ_CP039378.1_228045_230463_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|211aa|up_5|NZ_CP039378.1_230808_231441_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|188aa|up_4|NZ_CP039378.1_231433_231997_+	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|489aa|up_3|NZ_CP039378.1_232043_233510_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|397aa|up_2|NZ_CP039378.1_233584_234775_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|244aa|up_1|NZ_CP039378.1_234947_235679_+	NA	NA|578aa|up_0|NZ_CP039378.1_235748_237482_-	TIGR02720, Pyruvate_oxidase, pyruvate oxidase	NA|345aa|down_0|NZ_CP039378.1_245125_246160_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|339aa|down_1|NZ_CP039378.1_246173_247190_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|392aa|down_2|NZ_CP039378.1_247239_248415_-	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|258aa|down_3|NZ_CP039378.1_248504_249278_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|575aa|down_4|NZ_CP039378.1_249350_251075_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|89aa|down_5|NZ_CP039378.1_251074_251341_-	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|63aa|down_6|NZ_CP039378.1_251486_251675_-	NA	NA|740aa|down_7|NZ_CP039378.1_251879_254099_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|121aa|down_8|NZ_CP039378.1_254153_254516_-	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|282aa|down_9|NZ_CP039378.1_254515_255361_-	pfam01925, TauE, Sulfite exporter TauE/SafE
GCF_007923185.1_ASM792318v1	NZ_CP039378	Pediococcus pentosaceus strain SL001 chromosome, complete genome	2	331449-332870	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	cas3,WYL,csn2,cas2,cas1,cas9,DEDDh,csa3,DinG	Type II-A,Type II-B,Type II-C	GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC,GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC,GGGTTTAACCTTATTGATTTAACATCCTTCTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	21,21,21	21	TypeII-A,TypeII-B,TypeII-C	cas3,WYL,csn2,cas2,cas1,cas9,DEDDh,csa3,DinG	NA|142aa|up_7|NZ_CP039378.1_322114_322540_+,NA|37aa|up_6|NZ_CP039378.1_322529_322640_-,NA|149aa|down_4|NZ_CP039378.1_340713_341160_-,NA|54aa|down_8|NZ_CP039378.1_344995_345157_-,NA|221aa|down_9|NZ_CP039378.1_345380_346043_-	NA|385aa|up_9|NZ_CP039378.1_319928_321083_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|77aa|up_8|NZ_CP039378.1_321730_321961_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|142aa|up_7|NZ_CP039378.1_322114_322540_+	NA	NA|37aa|up_6|NZ_CP039378.1_322529_322640_-	NA	NA|541aa|up_5|NZ_CP039378.1_322854_324477_+	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|171aa|up_4|NZ_CP039378.1_326004_326517_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|284aa|up_3|NZ_CP039378.1_326513_327365_-	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	NA|862aa|up_2|NZ_CP039378.1_327459_330045_-	pfam11907, DUF3427, Domain of unknown function (DUF3427)	NA|84aa|up_1|NZ_CP039378.1_330158_330410_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|281aa|up_0|NZ_CP039378.1_330463_331306_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csn2|224aa|down_0|NZ_CP039378.1_332898_333570_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP039378.1_333566_333872_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP039378.1_333849_334755_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1370aa|down_3|NZ_CP039378.1_334963_339073_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|149aa|down_4|NZ_CP039378.1_340713_341160_-	NA	NA|551aa|down_5|NZ_CP039378.1_341358_343011_+	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|105aa|down_6|NZ_CP039378.1_343010_343325_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|390aa|down_7|NZ_CP039378.1_343553_344723_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|54aa|down_8|NZ_CP039378.1_344995_345157_-	NA	NA|221aa|down_9|NZ_CP039378.1_345380_346043_-	NA
GCF_007923185.1_ASM792318v1	NZ_CP039378	Pediococcus pentosaceus strain SL001 chromosome, complete genome	3	1004064-1004176	3	CRISPRCasFinder	no	csa3	cas3,WYL,csn2,cas2,cas1,cas9,DEDDh,csa3,DinG	Type I-A	GGCGTTCAACAATTAGATTCAGGAAGTCA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csn2,cas2,cas1,cas9,DEDDh,csa3,DinG	NA,NA	NA|268aa|up_9|NZ_CP039378.1_988002_988806_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|417aa|up_8|NZ_CP039378.1_988918_990169_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|401aa|up_7|NZ_CP039378.1_992332_993535_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|242aa|up_6|NZ_CP039378.1_993531_994257_+	pfam00563, EAL, EAL domain	NA|371aa|up_5|NZ_CP039378.1_995288_996401_+	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA)	NA|602aa|up_4|NZ_CP039378.1_996543_998349_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|280aa|up_3|NZ_CP039378.1_998768_999608_-	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional	NA|288aa|up_2|NZ_CP039378.1_999810_1000674_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|168aa|up_1|NZ_CP039378.1_1000693_1001197_+	pfam08876, DUF1836, Domain of unknown function (DUF1836)	csa3|107aa|up_0|NZ_CP039378.1_1001288_1001609_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|212aa|down_0|NZ_CP039378.1_1005211_1005847_+	pfam15983, DUF4767, Domain of unknown function (DUF4767)	NA|218aa|down_1|NZ_CP039378.1_1006106_1006760_+	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|238aa|down_2|NZ_CP039378.1_1006793_1007507_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|461aa|down_3|NZ_CP039378.1_1007666_1009049_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|448aa|down_4|NZ_CP039378.1_1009063_1010407_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|329aa|down_5|NZ_CP039378.1_1010687_1011674_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|373aa|down_6|NZ_CP039378.1_1011685_1012804_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|327aa|down_7|NZ_CP039378.1_1012806_1013787_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|438aa|down_8|NZ_CP039378.1_1013779_1015093_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|469aa|down_9|NZ_CP039378.1_1015095_1016502_+	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed
