assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007917315.2_ASM791731v2	NZ_CP041270	Enterococcus faecium strain VVEswe-S chromosome, complete genome	1	2400990-2401099	1	CRISPRCasFinder	no		cas3,DEDDh,cas2,DinG,RT,csa3,cas14j	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,DinG,RT,csa3,cas14j,c2c10_CAS-V-U3	NA,NA	NA|720aa|up_9|NZ_CP041270.2_2389577_2391737_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP041270.2_2391786_2392752_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP041270.2_2392840_2393980_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP041270.2_2394288_2395002_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP041270.2_2395255_2395957_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP041270.2_2396190_2397723_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NZ_CP041270.2_2397913_2399116_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP041270.2_2399197_2399887_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP041270.2_2399992_2400361_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP041270.2_2400413_2400917_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP041270.2_2401326_2402016_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP041270.2_2402119_2402542_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP041270.2_2402884_2403553_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP041270.2_2403565_2404438_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP041270.2_2404528_2405548_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|302aa|down_5|NZ_CP041270.2_2405720_2406626_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP041270.2_2406684_2407230_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP041270.2_2407330_2407501_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP041270.2_2407524_2407677_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP041270.2_2407838_2408483_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_007917315.2_ASM791731v2	NZ_CP041271	Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence	1	430-557	1	CRISPRCasFinder	no		cas14j	Orphan	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,cas2,DinG,RT,csa3,cas14j,c2c10_CAS-V-U3	NA,NA|111aa|down_0|NZ_CP041271.2_1880_2213_+,NA|97aa|down_2|NZ_CP041271.2_3191_3482_+,NA|78aa|down_3|NZ_CP041271.2_3673_3907_+,NA|254aa|down_7|NZ_CP041271.2_7798_8560_+,NA|87aa|down_8|NZ_CP041271.2_8572_8833_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|111aa|down_0|NZ_CP041271.2_1880_2213_+	NA	NA|114aa|down_1|NZ_CP041271.2_2831_3173_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|97aa|down_2|NZ_CP041271.2_3191_3482_+	NA	NA|78aa|down_3|NZ_CP041271.2_3673_3907_+	NA	NA|224aa|down_4|NZ_CP041271.2_4312_4984_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|660aa|down_5|NZ_CP041271.2_5036_7016_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|251aa|down_6|NZ_CP041271.2_7030_7783_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|254aa|down_7|NZ_CP041271.2_7798_8560_+	NA	NA|87aa|down_8|NZ_CP041271.2_8572_8833_+	NA	NA|697aa|down_9|NZ_CP041271.2_8829_10920_+	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain
GCF_007917315.2_ASM791731v2	NZ_CP041271	Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence	2	161112-161222	2	CRISPRCasFinder	no		cas14j	Orphan	ACAACTCATCAGTCCTTATTGACAAAGAGCC	31	1	5	161143-161191|161143-161191|161143-161191|161143-161191|161143-161191	NZ_CP041270.2_973094-973046|NZ_CP041270.2_1079076-1079028|NZ_CP041270.2_1905090-1905138|NZ_CP041270.2_2091479-2091527|NZ_CP041270.2_2221395-2221443	NA	1	1	Orphan	cas3,DEDDh,cas2,DinG,RT,csa3,cas14j,c2c10_CAS-V-U3	NA,NA	NA|554aa|up_9|NZ_CP041271.2_144749_146411_-	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|994aa|up_8|NZ_CP041271.2_146407_149389_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|638aa|up_7|NZ_CP041271.2_149516_151430_-	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|204aa|up_6|NZ_CP041271.2_151459_152071_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|491aa|up_5|NZ_CP041271.2_152121_153594_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|304aa|up_4|NZ_CP041271.2_153617_154529_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|313aa|up_3|NZ_CP041271.2_154540_155479_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|525aa|up_2|NZ_CP041271.2_155707_157282_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|243aa|up_1|NZ_CP041271.2_157259_157988_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|425aa|up_0|NZ_CP041271.2_158370_159645_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|110aa|down_0|NZ_CP041271.2_161238_161568_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_1|NZ_CP041271.2_161557_161830_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|268aa|down_2|NZ_CP041271.2_162280_163084_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|375aa|down_3|NZ_CP041271.2_163061_164186_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|272aa|down_4|NZ_CP041271.2_164201_165017_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|down_5|NZ_CP041271.2_165006_165897_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|430aa|down_6|NZ_CP041271.2_165963_167253_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|493aa|down_7|NZ_CP041271.2_168601_170080_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|400aa|down_8|NZ_CP041271.2_170069_171269_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|459aa|down_9|NZ_CP041271.2_171398_172775_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
