assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007917035.2_ASM791703v3	NZ_CP041263	Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R2	1	11530-11688	1	PILER-CR	no	RT,c2c10_CAS-V-U3	RT,c2c10_CAS-V-U3,cas14j	Unclear	AATTTGAGAAACATGCTGTTTTATATGGTTCTAAAAC	37	0	0	NA	NA	NA	2	2	Unclear	cas3,DEDDh,cas2,DinG,RT,csa3,cas14j,c2c10_CAS-V-U3	NA|80aa|up_9|NZ_CP041263.2_1450_1690_-,NA|83aa|up_8|NZ_CP041263.2_1709_1958_-,NA|189aa|up_7|NZ_CP041263.2_1972_2539_-,NA|182aa|up_6|NZ_CP041263.2_2539_3085_-,NA|116aa|up_2|NZ_CP041263.2_6595_6943_-,c2c10_CAS-V-U3|409aa|down_0|NZ_CP041263.2_11797_13024_-,NA|67aa|down_1|NZ_CP041263.2_13157_13358_-,NA|124aa|down_2|NZ_CP041263.2_13442_13814_-,NA|56aa|down_4|NZ_CP041263.2_15512_15680_-,NA|230aa|down_5|NZ_CP041263.2_15716_16406_-,NA|107aa|down_6|NZ_CP041263.2_16660_16981_-,NA|373aa|down_7|NZ_CP041263.2_17013_18132_-,NA|265aa|down_8|NZ_CP041263.2_18160_18955_-,NA|292aa|down_9|NZ_CP041263.2_18964_19840_-	NA|80aa|up_9|NZ_CP041263.2_1450_1690_-	NA	NA|83aa|up_8|NZ_CP041263.2_1709_1958_-	NA	NA|189aa|up_7|NZ_CP041263.2_1972_2539_-	NA	NA|182aa|up_6|NZ_CP041263.2_2539_3085_-	NA	NA|256aa|up_5|NZ_CP041263.2_3110_3878_-	cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family	NA|187aa|up_4|NZ_CP041263.2_4843_5404_-	pfam18186, SLATT_4, SMODS and SLOG-associating 2TM effector domain family 4	NA|274aa|up_3|NZ_CP041263.2_5423_6245_-	pfam18144, SMODS, Second Messenger Oligonucleotide or Dinucleotide Synthetase domain	NA|116aa|up_2|NZ_CP041263.2_6595_6943_-	NA	NA|432aa|up_1|NZ_CP041263.2_6935_8231_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	RT|621aa|up_0|NZ_CP041263.2_8312_10175_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	c2c10_CAS-V-U3|409aa|down_0|NZ_CP041263.2_11797_13024_-	NA	NA|67aa|down_1|NZ_CP041263.2_13157_13358_-	NA	NA|124aa|down_2|NZ_CP041263.2_13442_13814_-	NA	NA|543aa|down_3|NZ_CP041263.2_13864_15493_-	pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein	NA|56aa|down_4|NZ_CP041263.2_15512_15680_-	NA	NA|230aa|down_5|NZ_CP041263.2_15716_16406_-	NA	NA|107aa|down_6|NZ_CP041263.2_16660_16981_-	NA	NA|373aa|down_7|NZ_CP041263.2_17013_18132_-	NA	NA|265aa|down_8|NZ_CP041263.2_18160_18955_-	NA	NA|292aa|down_9|NZ_CP041263.2_18964_19840_-	NA
GCF_007917035.2_ASM791703v3	NZ_CP041261	Enterococcus faecium strain VVEswe-R chromosome, complete genome	1	2400794-2400903	1	CRISPRCasFinder	no		cas3,DEDDh,cas2,DinG,RT,csa3,cas14j	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,DinG,RT,csa3,cas14j,c2c10_CAS-V-U3	NA,NA	NA|720aa|up_9|NZ_CP041261.2_2389381_2391541_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP041261.2_2391590_2392556_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP041261.2_2392644_2393784_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP041261.2_2394092_2394806_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP041261.2_2395059_2395761_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP041261.2_2395994_2397527_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NZ_CP041261.2_2397717_2398920_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP041261.2_2399001_2399691_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP041261.2_2399796_2400165_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP041261.2_2400217_2400721_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP041261.2_2401130_2401820_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP041261.2_2401923_2402346_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP041261.2_2402688_2403357_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP041261.2_2403369_2404242_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP041261.2_2404332_2405352_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|302aa|down_5|NZ_CP041261.2_2405524_2406430_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP041261.2_2406488_2407034_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP041261.2_2407134_2407305_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP041261.2_2407328_2407481_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP041261.2_2407642_2408287_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_007917035.2_ASM791703v3	NZ_CP041262	Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence	1	431-558	1	CRISPRCasFinder	no		cas14j	Orphan	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,cas2,DinG,RT,csa3,cas14j,c2c10_CAS-V-U3	NA,NA|111aa|down_0|NZ_CP041262.2_1881_2214_+,NA|97aa|down_2|NZ_CP041262.2_3192_3483_+,NA|78aa|down_3|NZ_CP041262.2_3674_3908_+,NA|254aa|down_7|NZ_CP041262.2_7799_8561_+,NA|87aa|down_8|NZ_CP041262.2_8573_8834_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|111aa|down_0|NZ_CP041262.2_1881_2214_+	NA	NA|114aa|down_1|NZ_CP041262.2_2832_3174_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|97aa|down_2|NZ_CP041262.2_3192_3483_+	NA	NA|78aa|down_3|NZ_CP041262.2_3674_3908_+	NA	NA|224aa|down_4|NZ_CP041262.2_4313_4985_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|660aa|down_5|NZ_CP041262.2_5037_7017_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|251aa|down_6|NZ_CP041262.2_7031_7784_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|254aa|down_7|NZ_CP041262.2_7799_8561_+	NA	NA|87aa|down_8|NZ_CP041262.2_8573_8834_+	NA	NA|697aa|down_9|NZ_CP041262.2_8830_10921_+	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain
GCF_007917035.2_ASM791703v3	NZ_CP041262	Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence	2	161103-161213	2	CRISPRCasFinder	no		cas14j	Orphan	ACAACTCATCAGTCCTTATTGACAAAGAGCC	31	1	5	161134-161182|161134-161182|161134-161182|161134-161182|161134-161182	NZ_CP041261.2_972990-972942|NZ_CP041261.2_1078972-1078924|NZ_CP041261.2_1904901-1904949|NZ_CP041261.2_2091283-2091331|NZ_CP041261.2_2221199-2221247	NA	1	1	Orphan	cas3,DEDDh,cas2,DinG,RT,csa3,cas14j,c2c10_CAS-V-U3	NA,NA	NA|554aa|up_9|NZ_CP041262.2_144740_146402_-	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|994aa|up_8|NZ_CP041262.2_146398_149380_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|638aa|up_7|NZ_CP041262.2_149507_151421_-	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|204aa|up_6|NZ_CP041262.2_151450_152062_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|491aa|up_5|NZ_CP041262.2_152112_153585_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|304aa|up_4|NZ_CP041262.2_153608_154520_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|313aa|up_3|NZ_CP041262.2_154531_155470_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|525aa|up_2|NZ_CP041262.2_155698_157273_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|243aa|up_1|NZ_CP041262.2_157250_157979_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|425aa|up_0|NZ_CP041262.2_158361_159636_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|110aa|down_0|NZ_CP041262.2_161229_161559_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_1|NZ_CP041262.2_161548_161821_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|268aa|down_2|NZ_CP041262.2_162271_163075_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|375aa|down_3|NZ_CP041262.2_163052_164177_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|272aa|down_4|NZ_CP041262.2_164192_165008_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|down_5|NZ_CP041262.2_164997_165888_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|430aa|down_6|NZ_CP041262.2_165954_167244_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|493aa|down_7|NZ_CP041262.2_168592_170071_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|400aa|down_8|NZ_CP041262.2_170060_171260_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|459aa|down_9|NZ_CP041262.2_171389_172766_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
