assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007859575.1_ASM785957v1	NZ_CP042286	Staphylococcus argenteus strain B3-25B chromosome, complete genome	1	63968-64062	1	CRISPRCasFinder	no		cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TCATTATTTTCCAAATAATAAGTG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA|56aa|up_4|NZ_CP042286.1_58095_58263_-,NA|64aa|up_1|NZ_CP042286.1_60939_61131_+,NA|128aa|down_9|NZ_CP042286.1_75188_75572_+	NA|57aa|up_9|NZ_CP042286.1_52185_52356_-	pfam12669, P12, Virus attachment protein p12 family	NA|665aa|up_8|NZ_CP042286.1_52368_54363_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|up_7|NZ_CP042286.1_54374_54602_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|820aa|up_6|NZ_CP042286.1_54848_57308_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|183aa|up_5|NZ_CP042286.1_57471_58020_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|56aa|up_4|NZ_CP042286.1_58095_58263_-	NA	NA|515aa|up_3|NZ_CP042286.1_58374_59919_-	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|199aa|up_2|NZ_CP042286.1_60113_60710_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|64aa|up_1|NZ_CP042286.1_60939_61131_+	NA	NA|803aa|up_0|NZ_CP042286.1_61367_63776_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|69aa|down_0|NZ_CP042286.1_64084_64291_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|333aa|down_1|NZ_CP042286.1_64380_65379_-	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|385aa|down_2|NZ_CP042286.1_65401_66556_-	PRK08068, PRK08068, transaminase; Reviewed	NA|260aa|down_3|NZ_CP042286.1_67217_67997_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|606aa|down_4|NZ_CP042286.1_68356_70174_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|163aa|down_5|NZ_CP042286.1_70691_71180_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|234aa|down_6|NZ_CP042286.1_71445_72147_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|down_7|NZ_CP042286.1_72781_73837_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|190aa|down_8|NZ_CP042286.1_74232_74802_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|128aa|down_9|NZ_CP042286.1_75188_75572_+	NA
GCF_007859575.1_ASM785957v1	NZ_CP042286	Staphylococcus argenteus strain B3-25B chromosome, complete genome	2	200919-201000	2	CRISPRCasFinder	no		cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCACCCCAACCTGCATTGC	27	1	1	200946-200973	NZ_CP042286.1_1565316-1565343	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA|143aa|up_9|NZ_CP042286.1_192265_192694_+,NA|315aa|up_8|NZ_CP042286.1_192839_193784_+,NA|698aa|up_7|NZ_CP042286.1_193770_195864_+,NA|120aa|up_6|NZ_CP042286.1_196011_196371_+,NA	NA|143aa|up_9|NZ_CP042286.1_192265_192694_+	NA	NA|315aa|up_8|NZ_CP042286.1_192839_193784_+	NA	NA|698aa|up_7|NZ_CP042286.1_193770_195864_+	NA	NA|120aa|up_6|NZ_CP042286.1_196011_196371_+	NA	NA|204aa|up_5|NZ_CP042286.1_196455_197067_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|159aa|up_4|NZ_CP042286.1_197145_197622_-	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|168aa|up_3|NZ_CP042286.1_197624_198128_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|up_2|NZ_CP042286.1_198348_199116_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|up_1|NZ_CP042286.1_199112_199805_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|221aa|up_0|NZ_CP042286.1_199822_200485_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|187aa|down_0|NZ_CP042286.1_201512_202073_-	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|413aa|down_1|NZ_CP042286.1_202237_203476_+	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|102aa|down_2|NZ_CP042286.1_203439_203745_+	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|291aa|down_3|NZ_CP042286.1_203741_204614_+	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|351aa|down_4|NZ_CP042286.1_204600_205653_+	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|678aa|down_5|NZ_CP042286.1_205844_207878_-	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|211aa|down_6|NZ_CP042286.1_208756_209389_-	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|253aa|down_7|NZ_CP042286.1_209385_210144_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|235aa|down_8|NZ_CP042286.1_210140_210845_-	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|193aa|down_9|NZ_CP042286.1_210837_211416_-	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional
GCF_007859575.1_ASM785957v1	NZ_CP042286	Staphylococcus argenteus strain B3-25B chromosome, complete genome	3	849699-849944	1	CRT	no		cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	GCACAACTGCATAAGAGCCTCTAATCGCTAAAGC	34	1	1	849805-849838	NZ_CP042286.1_849613-849646	NA	3	3	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|169aa|down_4|NZ_CP042286.1_853648_854155_+,NA|239aa|down_5|NZ_CP042286.1_854319_855036_+	NA|209aa|up_9|NZ_CP042286.1_839370_839997_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|NZ_CP042286.1_840267_841206_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|NZ_CP042286.1_841417_841954_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|NZ_CP042286.1_842122_842599_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|NZ_CP042286.1_842638_843934_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_4|NZ_CP042286.1_843961_844483_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|NZ_CP042286.1_844982_845993_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_2|NZ_CP042286.1_846299_846683_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP042286.1_846679_848341_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP042286.1_848820_849456_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|280aa|down_0|NZ_CP042286.1_850018_850858_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP042286.1_851004_851955_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP042286.1_852009_852729_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP042286.1_852712_853513_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP042286.1_853648_854155_+	NA	NA|239aa|down_5|NZ_CP042286.1_854319_855036_+	NA	NA|263aa|down_6|NZ_CP042286.1_855203_855992_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP042286.1_856278_856653_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP042286.1_857595_858525_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP042286.1_858706_858931_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_007859575.1_ASM785957v1	NZ_CP042286	Staphylococcus argenteus strain B3-25B chromosome, complete genome	4	883431-883516	3	CRISPRCasFinder	no		cas3,casR,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTAATGTCACCTGACTTT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA,NA|31aa|down_2|NZ_CP042286.1_887640_887733_+	NA|248aa|up_9|NZ_CP042286.1_873706_874450_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|215aa|up_8|NZ_CP042286.1_874571_875216_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|251aa|up_7|NZ_CP042286.1_875290_876043_-	pfam13398, Peptidase_M50B, Peptidase M50B-like	NA|255aa|up_6|NZ_CP042286.1_876279_877044_+	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|265aa|up_5|NZ_CP042286.1_877108_877903_-	PRK13546, PRK13546, teichoic acids export ABC transporter ATP-binding subunit TagH	NA|271aa|up_4|NZ_CP042286.1_878249_879062_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|367aa|up_3|NZ_CP042286.1_879160_880261_+	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]	NA|356aa|up_2|NZ_CP042286.1_880257_881325_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|133aa|up_1|NZ_CP042286.1_881381_881780_+	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|432aa|up_0|NZ_CP042286.1_881863_883159_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|576aa|down_0|NZ_CP042286.1_884041_885769_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|410aa|down_1|NZ_CP042286.1_886136_887366_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|31aa|down_2|NZ_CP042286.1_887640_887733_+	NA	NA|278aa|down_3|NZ_CP042286.1_887908_888742_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|266aa|down_4|NZ_CP042286.1_889012_889810_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|335aa|down_5|NZ_CP042286.1_889841_890846_+	pfam01032, FecCD, FecCD transport family	NA|339aa|down_6|NZ_CP042286.1_890842_891859_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|322aa|down_7|NZ_CP042286.1_892078_893044_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|195aa|down_8|NZ_CP042286.1_893088_893673_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|121aa|down_9|NZ_CP042286.1_893665_894028_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional
GCF_007859575.1_ASM785957v1	NZ_CP042286	Staphylococcus argenteus strain B3-25B chromosome, complete genome	5	2322912-2323010	4	CRISPRCasFinder	no	csa3	cas3,casR,DEDDh,DinG,csa3,WYL	Type I-A	CAGTTGATGCGCAGCATCCAACTGTGTTCCTCT	33	0	0	NA	NA	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA|77aa|up_7|NZ_CP042286.1_2314691_2314922_-,NA|364aa|up_2|NZ_CP042286.1_2318723_2319815_+,NA|29aa|down_0|NZ_CP042286.1_2323523_2323610_+,NA|72aa|down_4|NZ_CP042286.1_2327931_2328147_+	NA|138aa|up_9|NZ_CP042286.1_2311826_2312240_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_8|NZ_CP042286.1_2312848_2314222_-	pfam01878, EVE, EVE domain	NA|77aa|up_7|NZ_CP042286.1_2314691_2314922_-	NA	NA|313aa|up_6|NZ_CP042286.1_2314952_2315891_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_5|NZ_CP042286.1_2316345_2317011_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_4|NZ_CP042286.1_2317161_2317482_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_3|NZ_CP042286.1_2317483_2318464_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_2|NZ_CP042286.1_2318723_2319815_+	NA	NA|571aa|up_1|NZ_CP042286.1_2319777_2321490_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|257aa|up_0|NZ_CP042286.1_2321775_2322546_-	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI	NA|29aa|down_0|NZ_CP042286.1_2323523_2323610_+	NA	NA|286aa|down_1|NZ_CP042286.1_2323739_2324597_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_2|NZ_CP042286.1_2324664_2325447_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_3|NZ_CP042286.1_2325675_2327481_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|72aa|down_4|NZ_CP042286.1_2327931_2328147_+	NA	NA|517aa|down_5|NZ_CP042286.1_2328162_2329713_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|707aa|down_6|NZ_CP042286.1_2329746_2331867_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP042286.1_2331879_2332314_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP042286.1_2332313_2333420_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2448aa|down_9|NZ_CP042286.1_2333724_2341068_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_007859575.1_ASM785957v1	NZ_CP042286	Staphylococcus argenteus strain B3-25B chromosome, complete genome	6	2398141-2398258	5	CRISPRCasFinder	no	WYL	cas3,casR,DEDDh,DinG,csa3,WYL	Unclear	TCATTGGTTTCCCATGATTTTTTAATATT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,casR,DEDDh,DinG,csa3,WYL	NA|72aa|up_9|NZ_CP042286.1_2386715_2386931_-,NA|61aa|up_0|NZ_CP042286.1_2397026_2397209_-,NA	NA|72aa|up_9|NZ_CP042286.1_2386715_2386931_-	NA	NA|283aa|up_8|NZ_CP042286.1_2387159_2388008_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|139aa|up_7|NZ_CP042286.1_2388077_2388494_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|810aa|up_6|NZ_CP042286.1_2388899_2391329_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	WYL|310aa|up_5|NZ_CP042286.1_2391503_2392433_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|210aa|up_4|NZ_CP042286.1_2392523_2393153_+	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|142aa|up_3|NZ_CP042286.1_2393347_2393773_+	pfam03642, MAP, MAP domain	NA|235aa|up_2|NZ_CP042286.1_2394157_2394862_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_1|NZ_CP042286.1_2394898_2396563_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_0|NZ_CP042286.1_2397026_2397209_-	NA	NA|393aa|down_0|NZ_CP042286.1_2398777_2399956_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|133aa|down_1|NZ_CP042286.1_2401632_2402031_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP042286.1_2402044_2402482_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_3|NZ_CP042286.1_2402722_2403526_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP042286.1_2403530_2404337_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP042286.1_2404326_2405187_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP042286.1_2405183_2405993_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_7|NZ_CP042286.1_2406484_2406853_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_8|NZ_CP042286.1_2406869_2407814_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_9|NZ_CP042286.1_2407887_2408277_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
