assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007836735.1_ASM783673v1	NZ_CP024952	Helicobacter pylori strain B125A chromosome, complete genome	1	575705-575896	1	CRT	no		cas2,cas14j,cas3,DEDDh	Orphan	TTATAAGTGCCTTGATTGAAA	21	0	0	NA	NA	I-B	3	3	Orphan	cas2,cas14j,cas3,DEDDh	NA|220aa|up_8|NZ_CP024952.1_561964_562624_-,NA|206aa|down_9|NZ_CP024952.1_594644_595262_-	NA|201aa|up_9|NZ_CP024952.1_561360_561963_-	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]	NA|220aa|up_8|NZ_CP024952.1_561964_562624_-	NA	NA|268aa|up_7|NZ_CP024952.1_562620_563424_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|304aa|up_6|NZ_CP024952.1_563420_564332_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|181aa|up_5|NZ_CP024952.1_564347_564890_-	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|327aa|up_4|NZ_CP024952.1_564890_565871_-	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|382aa|up_3|NZ_CP024952.1_565809_566955_-	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|194aa|up_2|NZ_CP024952.1_566951_567533_-	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|69aa|up_1|NZ_CP024952.1_567679_567886_+	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|365aa|up_0|NZ_CP024952.1_567953_569048_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|333aa|down_0|NZ_CP024952.1_576727_577726_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|231aa|down_1|NZ_CP024952.1_577870_578563_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|1086aa|down_2|NZ_CP024952.1_578660_581918_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|144aa|down_3|NZ_CP024952.1_581922_582354_+	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|515aa|down_4|NZ_CP024952.1_585223_586768_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|530aa|down_5|NZ_CP024952.1_587599_589189_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|519aa|down_6|NZ_CP024952.1_589210_590767_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|674aa|down_7|NZ_CP024952.1_591487_593509_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|380aa|down_8|NZ_CP024952.1_593512_594652_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|206aa|down_9|NZ_CP024952.1_594644_595262_-	NA
GCF_007836735.1_ASM783673v1	NZ_CP024952	Helicobacter pylori strain B125A chromosome, complete genome	2	1226249-1226385	1	CRISPRCasFinder	no		cas2,cas14j,cas3,DEDDh	Orphan	AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAGTAACGCTAGAGAG	47	0	0	NA	NA	NA	1	1	Orphan	cas2,cas14j,cas3,DEDDh	NA|87aa|up_8|NZ_CP024952.1_1220625_1220886_-,NA|255aa|up_5|NZ_CP024952.1_1223105_1223870_-,NA|60aa|up_4|NZ_CP024952.1_1223891_1224071_-,NA|262aa|up_3|NZ_CP024952.1_1224060_1224846_-,NA|32aa|up_2|NZ_CP024952.1_1225428_1225524_-,NA|89aa|up_1|NZ_CP024952.1_1225535_1225802_-,NA|102aa|down_0|NZ_CP024952.1_1226770_1227076_-	NA|833aa|up_9|NZ_CP024952.1_1218114_1220613_-	COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]	NA|87aa|up_8|NZ_CP024952.1_1220625_1220886_-	NA	NA|101aa|up_7|NZ_CP024952.1_1220886_1221189_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|639aa|up_6|NZ_CP024952.1_1221178_1223095_-	pfam13155, Toprim_2, Toprim-like	NA|255aa|up_5|NZ_CP024952.1_1223105_1223870_-	NA	NA|60aa|up_4|NZ_CP024952.1_1223891_1224071_-	NA	NA|262aa|up_3|NZ_CP024952.1_1224060_1224846_-	NA	NA|32aa|up_2|NZ_CP024952.1_1225428_1225524_-	NA	NA|89aa|up_1|NZ_CP024952.1_1225535_1225802_-	NA	NA|125aa|up_0|NZ_CP024952.1_1225789_1226164_-	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|102aa|down_0|NZ_CP024952.1_1226770_1227076_-	NA	NA|121aa|down_1|NZ_CP024952.1_1227261_1227624_-	sd00010, SLR, Sel1-like repeat	NA|135aa|down_2|NZ_CP024952.1_1227754_1228159_-	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|267aa|down_3|NZ_CP024952.1_1228155_1228956_-	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|78aa|down_4|NZ_CP024952.1_1228967_1229201_-	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|269aa|down_5|NZ_CP024952.1_1229197_1230004_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|331aa|down_6|NZ_CP024952.1_1230028_1231021_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|261aa|down_7|NZ_CP024952.1_1231269_1232052_+	PRK13980, PRK13980, NAD synthetase; Provisional	NA|313aa|down_8|NZ_CP024952.1_1232048_1232987_+	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|181aa|down_9|NZ_CP024952.1_1232919_1233462_-	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase
GCF_007836735.1_ASM783673v1	NZ_CP024952	Helicobacter pylori strain B125A chromosome, complete genome	3	1238349-1238438	2	CRISPRCasFinder	no		cas2,cas14j,cas3,DEDDh	Orphan	AAACCCAAGCGCAAGAATTAGAAA	24	0	0	NA	NA	NA	1	1	Orphan	cas2,cas14j,cas3,DEDDh	NA,NA|129aa|down_6|NZ_CP024952.1_1247717_1248104_-,NA|135aa|down_9|NZ_CP024952.1_1250012_1250417_-	NA|269aa|up_9|NZ_CP024952.1_1229197_1230004_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|331aa|up_8|NZ_CP024952.1_1230028_1231021_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|261aa|up_7|NZ_CP024952.1_1231269_1232052_+	PRK13980, PRK13980, NAD synthetase; Provisional	NA|313aa|up_6|NZ_CP024952.1_1232048_1232987_+	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_5|NZ_CP024952.1_1232919_1233462_-	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|298aa|up_4|NZ_CP024952.1_1233458_1234352_-	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|230aa|up_3|NZ_CP024952.1_1234321_1235011_-	TIGR03584, PseF, pseudaminic acid cytidylyltransferase	NA|238aa|up_2|NZ_CP024952.1_1235034_1235748_-	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|240aa|up_1|NZ_CP024952.1_1235903_1236623_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|181aa|up_0|NZ_CP024952.1_1236630_1237173_-	PRK13912, PRK13912, nuclease NucT; Provisional	NA|207aa|down_0|NZ_CP024952.1_1238882_1239503_+	TIGR03263, Guanylate_kinase, guanylate kinase	NA|82aa|down_1|NZ_CP024952.1_1239573_1239819_+	PRK00720, tatA, twin-arginine translocase TatA/TatE family subunit	NA|252aa|down_2|NZ_CP024952.1_1241506_1242262_+	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family	NA|707aa|down_3|NZ_CP024952.1_1242515_1244636_+	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|382aa|down_4|NZ_CP024952.1_1245604_1246750_+	pfam06779, MFS_4, Uncharacterized MFS-type transporter YbfB	NA|321aa|down_5|NZ_CP024952.1_1246755_1247718_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|129aa|down_6|NZ_CP024952.1_1247717_1248104_-	NA	NA|294aa|down_7|NZ_CP024952.1_1248150_1249032_-	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins	NA|295aa|down_8|NZ_CP024952.1_1249044_1249929_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|135aa|down_9|NZ_CP024952.1_1250012_1250417_-	NA
GCF_007836735.1_ASM783673v1	NZ_CP024952	Helicobacter pylori strain B125A chromosome, complete genome	4	1485615-1485739	3	CRISPRCasFinder	no		cas2,cas14j,cas3,DEDDh	Orphan	TCGTTGCCATTACTCATGTCGTC	23	0	0	NA	NA	NA	2	2	Orphan	cas2,cas14j,cas3,DEDDh	NA,NA|86aa|down_1|NZ_CP024952.1_1488968_1489226_-	NA|328aa|up_9|NZ_CP024952.1_1473520_1474504_-	COG2958, COG2958, Uncharacterized protein conserved in bacteria [Function unknown]	NA|310aa|up_8|NZ_CP024952.1_1474943_1475873_+	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase	NA|232aa|up_7|NZ_CP024952.1_1475883_1476579_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|676aa|up_6|NZ_CP024952.1_1476743_1478771_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|458aa|up_5|NZ_CP024952.1_1478791_1480165_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|451aa|up_4|NZ_CP024952.1_1480218_1481571_+	PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional	NA|63aa|up_3|NZ_CP024952.1_1481576_1481765_+	pfam17402, DUF5408, Family of unknown function (DUF5408)	NA|142aa|up_2|NZ_CP024952.1_1482075_1482501_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|130aa|up_1|NZ_CP024952.1_1482497_1482887_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|674aa|up_0|NZ_CP024952.1_1483042_1485064_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|462aa|down_0|NZ_CP024952.1_1487571_1488957_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|86aa|down_1|NZ_CP024952.1_1488968_1489226_-	NA	NA|353aa|down_2|NZ_CP024952.1_1489655_1490714_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|90aa|down_3|NZ_CP024952.1_1490838_1491108_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|446aa|down_4|NZ_CP024952.1_1491197_1492535_+	PRK14324, glmM, phosphoglucosamine mutase; Provisional	NA|158aa|down_5|NZ_CP024952.1_1492528_1493002_+	TIGR00077, Lipoprotein_signal_peptidase, lipoprotein signal peptidase	NA|239aa|down_6|NZ_CP024952.1_1493347_1494064_+	PRK13986, PRK13986, urease subunit beta	NA|570aa|down_7|NZ_CP024952.1_1494067_1495777_+	PRK13985, ureB, urease subunit alpha	NA|196aa|down_8|NZ_CP024952.1_1495967_1496555_+	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters	NA|171aa|down_9|NZ_CP024952.1_1496556_1497069_+	PRK13261, ureE, urease accessory protein UreE; Provisional
