assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	1	333504-334302	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP041207.1_333019_333202_-,NA|87aa|down_2|NZ_CP041207.1_341812_342073_+	NA|398aa|up_9|NZ_CP041207.1_323197_324391_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP041207.1_324426_326109_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP041207.1_326125_328321_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP041207.1_328434_329568_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP041207.1_329564_330185_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP041207.1_330281_330863_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP041207.1_330792_331518_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP041207.1_331607_332528_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP041207.1_332567_332996_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP041207.1_333019_333202_-	NA	NA|883aa|down_0|NZ_CP041207.1_336367_339016_-	pfam00934, PE, PE family	NA|838aa|down_1|NZ_CP041207.1_339265_341779_-	pfam00934, PE, PE family	NA|87aa|down_2|NZ_CP041207.1_341812_342073_+	NA	NA|537aa|down_3|NZ_CP041207.1_342069_343680_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_4|NZ_CP041207.1_343703_344612_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_5|NZ_CP041207.1_344835_346731_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_6|NZ_CP041207.1_346727_348344_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_7|NZ_CP041207.1_348340_352333_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_8|NZ_CP041207.1_352329_352638_+	pfam00934, PE, PE family	NA|514aa|down_9|NZ_CP041207.1_352640_354182_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	2	340810-341032	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_2|NZ_CP041207.1_333019_333202_-,NA|87aa|down_0|NZ_CP041207.1_341812_342073_+	NA|732aa|up_9|NZ_CP041207.1_326125_328321_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_8|NZ_CP041207.1_328434_329568_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_7|NZ_CP041207.1_329564_330185_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_6|NZ_CP041207.1_330281_330863_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_5|NZ_CP041207.1_330792_331518_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_4|NZ_CP041207.1_331607_332528_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_3|NZ_CP041207.1_332567_332996_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_2|NZ_CP041207.1_333019_333202_-	NA	NA|936aa|up_1|NZ_CP041207.1_333296_336104_-	pfam00934, PE, PE family	NA|883aa|up_0|NZ_CP041207.1_336367_339016_-	pfam00934, PE, PE family	NA|87aa|down_0|NZ_CP041207.1_341812_342073_+	NA	NA|537aa|down_1|NZ_CP041207.1_342069_343680_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP041207.1_343703_344612_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP041207.1_344835_346731_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP041207.1_346727_348344_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP041207.1_348340_352333_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP041207.1_352329_352638_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP041207.1_352640_354182_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP041207.1_354230_354524_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP041207.1_354553_354844_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	3	369169-369867	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	369457-369498|369532-369564	NZ_CP041207.1_377488-377529|NZ_CP041207.1_376303-376335	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP041207.1_366181_366484_+,NA|161aa|down_1|NZ_CP041207.1_379277_379760_-,NA|410aa|down_5|NZ_CP041207.1_381876_383106_+	NA|262aa|up_9|NZ_CP041207.1_360876_361662_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP041207.1_361650_362454_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP041207.1_362463_363861_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP041207.1_364039_365815_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP041207.1_365957_366185_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP041207.1_366181_366484_+	NA	NA|74aa|up_3|NZ_CP041207.1_366531_366753_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP041207.1_366749_367175_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP041207.1_367310_367943_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP041207.1_367939_368848_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP041207.1_378618_379290_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP041207.1_379277_379760_-	NA	NA|239aa|down_2|NZ_CP041207.1_379817_380534_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP041207.1_380635_381292_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP041207.1_381361_381853_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP041207.1_381876_383106_+	NA	NA|621aa|down_6|NZ_CP041207.1_383260_385123_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP041207.1_385194_385581_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP041207.1_385583_386246_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP041207.1_386306_387191_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	4	635278-635415	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	635296-635313|635296-635313|635380-635397	NZ_CP041207.1_22130-22147|NZ_CP041207.1_1418359-1418376|NZ_CP041207.1_977977-977994	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_8|NZ_CP041207.1_626032_626194_-,NA|61aa|up_6|NZ_CP041207.1_626529_626712_+,NA|478aa|up_0|NZ_CP041207.1_632293_633727_-,NA|450aa|down_2|NZ_CP041207.1_637050_638400_-,NA|93aa|down_5|NZ_CP041207.1_639930_640209_-	NA|406aa|up_9|NZ_CP041207.1_624818_626036_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_8|NZ_CP041207.1_626032_626194_-	NA	NA|106aa|up_7|NZ_CP041207.1_626240_626558_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|61aa|up_6|NZ_CP041207.1_626529_626712_+	NA	NA|623aa|up_5|NZ_CP041207.1_626704_628573_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP041207.1_628468_629476_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP041207.1_629557_630436_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP041207.1_630452_631247_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP041207.1_631243_632284_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP041207.1_632293_633727_-	NA	NA|211aa|down_0|NZ_CP041207.1_635738_636371_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP041207.1_636367_637030_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP041207.1_637050_638400_-	NA	NA|381aa|down_3|NZ_CP041207.1_638411_639554_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP041207.1_639568_639871_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP041207.1_639930_640209_-	NA	NA|418aa|down_6|NZ_CP041207.1_640205_641459_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP041207.1_641578_641965_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP041207.1_642027_642912_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP041207.1_643007_643910_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	5	696026-696102	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP041207.1_681921_682329_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP041207.1_682388_683075_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP041207.1_683228_685862_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP041207.1_685884_688272_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP041207.1_688409_689132_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP041207.1_689128_689926_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP041207.1_689927_690815_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP041207.1_690820_692035_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP041207.1_693058_694504_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP041207.1_694500_695937_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP041207.1_697237_698788_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP041207.1_698839_699232_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP041207.1_699228_699486_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP041207.1_699668_700904_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP041207.1_701154_701568_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP041207.1_701564_701801_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP041207.1_701904_702411_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP041207.1_702524_702995_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP041207.1_703038_703800_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP041207.1_703856_704168_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	6	931314-932252	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	932097-932132|932097-932132|932097-932132	NZ_CP041207.1_1220041-1220076|NZ_CP041207.1_679123-679088|NZ_CP041207.1_2438119-2438084	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|60aa|down_0|NZ_CP041207.1_932313_932493_+,NA|184aa|down_3|NZ_CP041207.1_936253_936805_-,NA|63aa|down_6|NZ_CP041207.1_938968_939157_-	NA|685aa|up_9|NZ_CP041207.1_918950_921005_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP041207.1_921170_922340_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP041207.1_922427_923444_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP041207.1_923605_924247_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP041207.1_924327_925383_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP041207.1_925434_925827_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP041207.1_925884_926307_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP041207.1_926268_926559_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP041207.1_926663_927569_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP041207.1_927587_928403_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|60aa|down_0|NZ_CP041207.1_932313_932493_+	NA	NA|880aa|down_1|NZ_CP041207.1_932521_935161_-	pfam00934, PE, PE family	NA|215aa|down_2|NZ_CP041207.1_935628_936273_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_3|NZ_CP041207.1_936253_936805_-	NA	NA|218aa|down_4|NZ_CP041207.1_936954_937608_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_5|NZ_CP041207.1_937678_938707_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_6|NZ_CP041207.1_938968_939157_-	NA	NA|257aa|down_7|NZ_CP041207.1_939395_940166_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_8|NZ_CP041207.1_940252_941065_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_9|NZ_CP041207.1_941132_941993_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	7	1218197-1219053	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	75	1218580-1218601|1218625-1218640|1218763-1218784|1218763-1218784|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898|1218880-1218898	NZ_CP041207.1_2970521-2970500|NZ_CP041207.1_2097394-2097379|NZ_CP041207.1_842129-842150|NZ_CP041207.1_1223936-1223957|NZ_CP041207.1_1579481-1579463|NZ_CP041207.1_1219723-1219741|NZ_CP041207.1_1223909-1223927|NZ_CP041207.1_336869-336851|NZ_CP041207.1_678787-678769|NZ_CP041207.1_1637369-1637351|NZ_CP041207.1_1640645-1640627|NZ_CP041207.1_1997328-1997310|NZ_CP041207.1_2070378-2070360|NZ_CP041207.1_2070825-2070807|NZ_CP041207.1_2070924-2070906|NZ_CP041207.1_2811415-2811397|NZ_CP041207.1_2814943-2814925|NZ_CP041207.1_149860-149878|NZ_CP041207.1_341134-341152|NZ_CP041207.1_627979-627997|NZ_CP041207.1_628201-628219|NZ_CP041207.1_844911-844929|NZ_CP041207.1_1097077-1097095|NZ_CP041207.1_1097659-1097677|NZ_CP041207.1_1219252-1219270|NZ_CP041207.1_1219642-1219660|NZ_CP041207.1_1219930-1219948|NZ_CP041207.1_1219948-1219966|NZ_CP041207.1_1224328-1224346|NZ_CP041207.1_2008923-2008941|NZ_CP041207.1_2433945-2433963|NZ_CP041207.1_2704145-2704163|NZ_CP041207.1_3063304-3063322|NZ_CP041207.1_3063403-3063421|NZ_CP041207.1_3711790-3711808|NZ_CP041207.1_3804541-3804559|NZ_CP041207.1_3804724-3804742|NZ_CP041207.1_3804892-3804910|NZ_CP041207.1_3943472-3943490|NZ_CP041207.1_3945211-3945229|NZ_CP041207.1_3945739-3945757|NZ_CP041207.1_3954328-3954346|NZ_CP041207.1_4108736-4108754|NZ_CP041207.1_334869-334851|NZ_CP041207.1_337925-337907|NZ_CP041207.1_338378-338360|NZ_CP041207.1_338429-338411|NZ_CP041207.1_338438-338420|NZ_CP041207.1_340709-340691|NZ_CP041207.1_341105-341087|NZ_CP041207.1_341228-341210|NZ_CP041207.1_365759-365741|NZ_CP041207.1_446118-446100|NZ_CP041207.1_550820-550802|NZ_CP041207.1_677953-677935|NZ_CP041207.1_1101729-1101711|NZ_CP041207.1_1497233-1497215|NZ_CP041207.1_1625343-1625325|NZ_CP041207.1_1625795-1625777|NZ_CP041207.1_1643365-1643347|NZ_CP041207.1_1643374-1643356|NZ_CP041207.1_1862504-1862486|NZ_CP041207.1_1863032-1863014|NZ_CP041207.1_1996613-1996595|NZ_CP041207.1_2097592-2097574|NZ_CP041207.1_2318965-2318947|NZ_CP041207.1_2372478-2372460|NZ_CP041207.1_2438032-2438014|NZ_CP041207.1_2582057-2582039|NZ_CP041207.1_2804730-2804712|NZ_CP041207.1_2805312-2805294|NZ_CP041207.1_3746703-3746685|NZ_CP041207.1_3746946-3746928|NZ_CP041207.1_3747079-3747061|NZ_CP041207.1_4046099-4046081	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_4|NZ_CP041207.1_1213629_1213896_+,NA|90aa|up_0|NZ_CP041207.1_1217646_1217916_-,NA|61aa|down_3|NZ_CP041207.1_1221516_1221699_+,NA|35aa|down_4|NZ_CP041207.1_1221808_1221913_+	NA|241aa|up_9|NZ_CP041207.1_1209559_1210282_+	pfam06271, RDD, RDD family	NA|389aa|up_8|NZ_CP041207.1_1210313_1211480_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_7|NZ_CP041207.1_1211550_1212045_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_6|NZ_CP041207.1_1212230_1212665_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_5|NZ_CP041207.1_1212766_1213633_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_4|NZ_CP041207.1_1213629_1213896_+	NA	NA|674aa|up_3|NZ_CP041207.1_1213882_1215904_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_2|NZ_CP041207.1_1216002_1216731_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_1|NZ_CP041207.1_1216841_1217630_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|90aa|up_0|NZ_CP041207.1_1217646_1217916_-	NA	NA|107aa|down_0|NZ_CP041207.1_1220331_1220652_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP041207.1_1220804_1221239_+	pfam00934, PE, PE family	NA|63aa|down_2|NZ_CP041207.1_1221316_1221505_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP041207.1_1221516_1221699_+	NA	NA|35aa|down_4|NZ_CP041207.1_1221808_1221913_+	NA	NA|152aa|down_5|NZ_CP041207.1_1221890_1222346_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|313aa|down_6|NZ_CP041207.1_1225537_1226476_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NZ_CP041207.1_1226863_1228144_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NZ_CP041207.1_1228248_1229076_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NZ_CP041207.1_1229286_1230588_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	8	2097064-2097318	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2097145-2097162|2097145-2097162|2097235-2097252	NZ_CP041207.1_403784-403767|NZ_CP041207.1_611354-611337|NZ_CP041207.1_3455929-3455912	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NZ_CP041207.1_2093333_2093534_+,NA|88aa|up_0|NZ_CP041207.1_2096423_2096687_-,NA	NA|226aa|up_9|NZ_CP041207.1_2083615_2084293_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_8|NZ_CP041207.1_2084651_2087477_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_7|NZ_CP041207.1_2087703_2088564_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_6|NZ_CP041207.1_2088604_2089471_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_5|NZ_CP041207.1_2089475_2091362_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_4|NZ_CP041207.1_2091377_2093411_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|67aa|up_3|NZ_CP041207.1_2093333_2093534_+	NA	NA|742aa|up_2|NZ_CP041207.1_2093530_2095756_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP041207.1_2096031_2096427_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP041207.1_2096423_2096687_-	NA	NA|346aa|down_0|NZ_CP041207.1_2098455_2099493_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP041207.1_2099492_2100860_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP041207.1_2101033_2102470_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP041207.1_2102505_2103957_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP041207.1_2103986_2104937_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP041207.1_2104951_2105368_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP041207.1_2105645_2106068_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP041207.1_2106116_2106419_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP041207.1_2106415_2106730_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP041207.1_2106729_2108463_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	9	2177931-2178150	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP041207.1_2168760_2169168_-,NA|127aa|down_5|NZ_CP041207.1_2185666_2186047_-	NA|216aa|up_9|NZ_CP041207.1_2162074_2162722_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP041207.1_2162728_2164951_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP041207.1_2164988_2165432_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP041207.1_2165545_2166139_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP041207.1_2166221_2166827_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP041207.1_2166926_2167931_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP041207.1_2168030_2168783_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP041207.1_2168760_2169168_-	NA	NA|767aa|up_1|NZ_CP041207.1_2169302_2171603_+	PLN02892, PLN02892, isocitrate lyase	NA|1552aa|up_0|NZ_CP041207.1_2171772_2176428_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP041207.1_2180177_2180642_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP041207.1_2180739_2181603_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP041207.1_2181640_2182912_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP041207.1_2183183_2184299_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP041207.1_2184289_2185630_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP041207.1_2185666_2186047_-	NA	NA|621aa|down_6|NZ_CP041207.1_2186203_2188066_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP041207.1_2188073_2188553_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP041207.1_2188789_2189563_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP041207.1_2190356_2191001_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	10	3127895-3130563	2,5,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-A,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	36,36,36	36	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|NZ_CP041207.1_3121576_3121981_+,NA|64aa|up_6|NZ_CP041207.1_3121977_3122169_+,NA|86aa|up_4|NZ_CP041207.1_3123755_3124013_+,NA|104aa|up_3|NZ_CP041207.1_3124117_3124429_+,NA|203aa|up_2|NZ_CP041207.1_3124848_3125457_+,NA	NA|92aa|up_9|NZ_CP041207.1_3120723_3120999_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|NZ_CP041207.1_3121138_3121504_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|NZ_CP041207.1_3121576_3121981_+	NA	NA|64aa|up_6|NZ_CP041207.1_3121977_3122169_+	NA	NA|385aa|up_5|NZ_CP041207.1_3122367_3123522_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP041207.1_3123755_3124013_+	NA	NA|104aa|up_3|NZ_CP041207.1_3124117_3124429_+	NA	NA|203aa|up_2|NZ_CP041207.1_3124848_3125457_+	NA	NA|470aa|up_1|NZ_CP041207.1_3125527_3126937_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP041207.1_3126933_3127746_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	cas2|114aa|down_0|NZ_CP041207.1_3130611_3130953_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP041207.1_3130953_3131970_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP041207.1_3131982_3133131_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP041207.1_3133226_3134354_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP041207.1_3134350_3135259_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP041207.1_3135239_3135950_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP041207.1_3135959_3136334_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP041207.1_3136330_3138769_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NZ_CP041207.1_3138765_3139710_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP041207.1_3139887_3140433_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	11	3850288-3850377	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_8|NZ_CP041207.1_3843682_3843913_+,NA|121aa|up_7|NZ_CP041207.1_3844016_3844379_-,NA|89aa|up_4|NZ_CP041207.1_3845815_3846082_-,NA|73aa|up_2|NZ_CP041207.1_3848353_3848572_-,NA|89aa|down_0|NZ_CP041207.1_3850628_3850895_-,NA|121aa|down_1|NZ_CP041207.1_3851362_3851725_-,NA|52aa|down_3|NZ_CP041207.1_3853566_3853722_-,NA|238aa|down_6|NZ_CP041207.1_3857937_3858651_-	NA|409aa|up_9|NZ_CP041207.1_3842496_3843723_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_8|NZ_CP041207.1_3843682_3843913_+	NA	NA|121aa|up_7|NZ_CP041207.1_3844016_3844379_-	NA	NA|177aa|up_6|NZ_CP041207.1_3844541_3845072_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|177aa|up_5|NZ_CP041207.1_3845338_3845869_+	pfam00823, PPE, PPE family	NA|89aa|up_4|NZ_CP041207.1_3845815_3846082_-	NA	NA|725aa|up_3|NZ_CP041207.1_3846186_3848361_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|73aa|up_2|NZ_CP041207.1_3848353_3848572_-	NA	NA|100aa|up_1|NZ_CP041207.1_3849066_3849366_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_CP041207.1_3849451_3849994_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|89aa|down_0|NZ_CP041207.1_3850628_3850895_-	NA	NA|121aa|down_1|NZ_CP041207.1_3851362_3851725_-	NA	NA|179aa|down_2|NZ_CP041207.1_3851887_3852424_+	pfam00823, PPE, PPE family	NA|52aa|down_3|NZ_CP041207.1_3853566_3853722_-	NA	NA|461aa|down_4|NZ_CP041207.1_3855094_3856477_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_CP041207.1_3856514_3857936_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_CP041207.1_3857937_3858651_-	NA	NA|285aa|down_7|NZ_CP041207.1_3858661_3859516_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_CP041207.1_3859737_3861612_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_CP041207.1_3861633_3862110_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	12	3962390-3964328	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CNNCGGCGGNNCCGGCGGCANNGGCGGCNNCGGCGGC	37	3	7	3962427-3962521|3962427-3962521|3962559-3962632|3962559-3962632|3963333-3963367|3963333-3963367|3963333-3963367	NZ_CP041207.1_3961725-3961819|NZ_CP041207.1_3962076-3962170|NZ_CP041207.1_3961857-3961930|NZ_CP041207.1_3962208-3962281|NZ_CP041207.1_3961635-3961669|NZ_CP041207.1_3962364-3962398|NZ_CP041207.1_3945842-3945876	NA	22	22	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|73aa|down_0|NZ_CP041207.1_3964973_3965192_-,NA|280aa|down_3|NZ_CP041207.1_3967795_3968635_+	NA|255aa|up_9|NZ_CP041207.1_3932707_3933472_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_8|NZ_CP041207.1_3933697_3934651_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_7|NZ_CP041207.1_3934675_3934867_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_6|NZ_CP041207.1_3935081_3936284_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_5|NZ_CP041207.1_3936308_3937430_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_4|NZ_CP041207.1_3937500_3939009_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1496aa|up_3|NZ_CP041207.1_3939179_3943667_+	pfam00934, PE, PE family	NA|516aa|up_2|NZ_CP041207.1_3950448_3951996_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NZ_CP041207.1_3951992_3952829_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NZ_CP041207.1_3959639_3960296_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|73aa|down_0|NZ_CP041207.1_3964973_3965192_-	NA	NA|549aa|down_1|NZ_CP041207.1_3965188_3966835_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_2|NZ_CP041207.1_3966908_3967700_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_3|NZ_CP041207.1_3967795_3968635_+	NA	NA|399aa|down_4|NZ_CP041207.1_3968689_3969886_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_5|NZ_CP041207.1_3969914_3970625_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_6|NZ_CP041207.1_3970689_3971733_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_7|NZ_CP041207.1_3971885_3972797_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_8|NZ_CP041207.1_3972812_3973877_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_9|NZ_CP041207.1_3975119_3976151_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_007833935.1_ASM783393v1	NZ_CP041207	Mycobacterium tuberculosis strain MT-0080 chromosome, complete genome	13	4125153-4125241	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|65aa|up_9|NZ_CP041207.1_4113844_4114039_+,NA|257aa|up_7|NZ_CP041207.1_4115739_4116510_-,NA|119aa|up_2|NZ_CP041207.1_4121644_4122001_+,NA|233aa|up_0|NZ_CP041207.1_4124257_4124956_-,NA|126aa|down_6|NZ_CP041207.1_4130476_4130854_+	NA|65aa|up_9|NZ_CP041207.1_4113844_4114039_+	NA	NA|288aa|up_8|NZ_CP041207.1_4114121_4114985_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|NZ_CP041207.1_4115739_4116510_-	NA	NA|549aa|up_6|NZ_CP041207.1_4116506_4118153_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_5|NZ_CP041207.1_4118149_4119013_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|NZ_CP041207.1_4119005_4119932_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|NZ_CP041207.1_4119933_4121559_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_2|NZ_CP041207.1_4121644_4122001_+	NA	NA|652aa|up_1|NZ_CP041207.1_4122266_4124222_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP041207.1_4124257_4124956_-	NA	NA|173aa|down_0|NZ_CP041207.1_4125301_4125820_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP041207.1_4125820_4126804_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP041207.1_4126796_4127990_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP041207.1_4127995_4128817_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP041207.1_4128948_4129632_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP041207.1_4129631_4130369_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP041207.1_4130476_4130854_+	NA	NA|225aa|down_7|NZ_CP041207.1_4130952_4131627_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP041207.1_4131730_4132525_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP041207.1_4132531_4132987_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
