assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007833295.1_ASM783329v1	NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	1	1593953-1594083	1	CRISPRCasFinder	no		cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	Orphan	AGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAA	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	NA|125aa|up_6|NZ_CP042250.1_1588205_1588580_-,NA|36aa|up_4|NZ_CP042250.1_1590216_1590324_-,NA|99aa|down_5|NZ_CP042250.1_1601755_1602052_+	NA|245aa|up_9|NZ_CP042250.1_1585449_1586184_+	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins	NA|264aa|up_8|NZ_CP042250.1_1586219_1587011_+	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|349aa|up_7|NZ_CP042250.1_1587007_1588054_-	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|125aa|up_6|NZ_CP042250.1_1588205_1588580_-	NA	NA|428aa|up_5|NZ_CP042250.1_1588727_1590011_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP042250.1_1590216_1590324_-	NA	NA|130aa|up_3|NZ_CP042250.1_1590719_1591109_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP042250.1_1591102_1591450_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP042250.1_1591449_1593216_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP042250.1_1593231_1593948_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP042250.1_1594308_1597110_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP042250.1_1597124_1598342_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP042250.1_1598435_1599602_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP042250.1_1599601_1600471_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|NZ_CP042250.1_1600710_1601826_+	sd00006, TPR, Tetratricopeptide repeat	NA|99aa|down_5|NZ_CP042250.1_1601755_1602052_+	NA	NA|523aa|down_6|NZ_CP042250.1_1603155_1604724_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_7|NZ_CP042250.1_1604739_1605879_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_8|NZ_CP042250.1_1605893_1606007_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_9|NZ_CP042250.1_1606006_1606300_+	PRK10588, PRK10588, hypothetical protein; Provisional
GCF_007833295.1_ASM783329v1	NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	2	1754424-1754931	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	1	2	1754872-1754903|1754872-1754903	NZ_CP042248.1_29997-30028|NZ_CP042247.1_116398-116367	I-F:I-F:I-F	7,8,8	8	TypeI-F	cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	NA,NA	NA|551aa|up_9|NZ_CP042250.1_1741006_1742659_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP042250.1_1742802_1743702_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP042250.1_1744022_1744718_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP042250.1_1745143_1746802_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP042250.1_1746798_1747755_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP042250.1_1747905_1749021_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP042250.1_1749017_1750964_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP042250.1_1751036_1751261_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP042250.1_1751583_1751904_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP042250.1_1751934_1754211_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NZ_CP042250.1_1755103_1756087_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NZ_CP042250.1_1756083_1759317_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|NZ_CP042250.1_1759646_1760954_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|down_3|NZ_CP042250.1_1761884_1762886_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_4|NZ_CP042250.1_1762896_1763451_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_5|NZ_CP042250.1_1764431_1764650_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_6|NZ_CP042250.1_1764934_1765639_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_7|NZ_CP042250.1_1765680_1767402_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_8|NZ_CP042250.1_1767402_1769169_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_9|NZ_CP042250.1_1769291_1770257_-	PRK10262, PRK10262, thioredoxin reductase; Provisional
GCF_007833295.1_ASM783329v1	NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	3	1763992-1764319	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	4,5,5	5	TypeI-F	cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	NA,NA	NA|372aa|up_9|NZ_CP042250.1_1747905_1749021_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_8|NZ_CP042250.1_1749017_1750964_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_7|NZ_CP042250.1_1751036_1751261_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_6|NZ_CP042250.1_1751583_1751904_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_5|NZ_CP042250.1_1751934_1754211_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_4|NZ_CP042250.1_1755103_1756087_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_3|NZ_CP042250.1_1756083_1759317_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_2|NZ_CP042250.1_1759646_1760954_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|up_1|NZ_CP042250.1_1761884_1762886_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NZ_CP042250.1_1762896_1763451_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NZ_CP042250.1_1764431_1764650_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP042250.1_1764934_1765639_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP042250.1_1765680_1767402_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP042250.1_1767402_1769169_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP042250.1_1769291_1770257_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP042250.1_1770800_1771295_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1322aa|down_6|NZ_CP042250.1_1771429_1775395_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP042250.1_1775553_1776165_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP042250.1_1776175_1777519_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP042250.1_1777609_1778902_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_007833295.1_ASM783329v1	NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	4	4148565-4148697	3	PILER-CR	no		cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	NA,NA|73aa|down_7|NZ_CP042250.1_4156643_4156862_+	NA|283aa|up_9|NZ_CP042250.1_4139090_4139939_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|78aa|up_8|NZ_CP042250.1_4140253_4140487_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP042250.1_4140572_4141052_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP042250.1_4141243_4143106_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP042250.1_4143098_4143629_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP042250.1_4143736_4145068_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP042250.1_4145126_4145414_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP042250.1_4145410_4146697_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP042250.1_4146747_4147689_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP042250.1_4147703_4148474_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP042250.1_4148946_4150461_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP042250.1_4150491_4151634_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP042250.1_4151761_4152979_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP042250.1_4153051_4154605_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP042250.1_4154713_4155499_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP042250.1_4155504_4156095_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP042250.1_4156213_4156609_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|NZ_CP042250.1_4156643_4156862_+	NA	NA|153aa|down_8|NZ_CP042250.1_4156898_4157357_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1074aa|down_9|NZ_CP042250.1_4157580_4160802_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit
GCF_007833295.1_ASM783329v1	NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5	4380672-4380811	4	CRISPRCasFinder	no		cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,cas1,cas3f,cas8f,cas7f,cas6f,DEDDh,RT,WYL	NA,NA	NA|340aa|up_9|NZ_CP042250.1_4368882_4369902_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP042250.1_4369905_4370469_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP042250.1_4370685_4371717_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP042250.1_4371740_4372505_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP042250.1_4372569_4373889_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP042250.1_4373955_4374954_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP042250.1_4375031_4376534_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP042250.1_4376694_4377777_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP042250.1_4377776_4378877_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP042250.1_4379143_4380655_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP042250.1_4380912_4381356_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP042250.1_4381355_4384211_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP042250.1_4384257_4385445_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP042250.1_4385637_4386141_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP042250.1_4386317_4386734_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP042250.1_4386895_4387900_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP042250.1_4387944_4388397_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP042250.1_4389074_4390295_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|315aa|down_8|NZ_CP042250.1_4390305_4391250_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP042250.1_4391260_4392265_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
