The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	1080379	1087519	5084081		Escherichia_phage(83.33%)	6	NA	NA
WP_001279003.1|1080379_1081018_-	aldolase	NA	A0A077SK32	Escherichia_phage	74.5	1.4e-82
WP_000590420.1|1081014_1082277_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	61.4	2.2e-135
WP_000847997.1|1082273_1083182_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	1.5e-117
WP_145768575.1|1083377_1084145_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.0	1.6e-69
WP_001141302.1|1084195_1084852_-	protein-serine/threonine phosphatase	NA	A0A077SLQ6	Escherichia_phage	46.6	1.1e-50
WP_000103864.1|1084957_1087519_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.8	2.0e-31
>prophage 2
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	1749017	1759317	5084081	protease	Vibrio_phage(33.33%)	6	NA	NA
WP_000188147.1|1749017_1750964_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.1	1.1e-37
WP_000410785.1|1751036_1751261_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
WP_000520781.1|1751583_1751904_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
WP_000934041.1|1751934_1754211_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
WP_000097886.1|1755103_1756087_+	type I-F CRISPR-associated endonuclease Cas1	NA	A0A2D0YFC9	Vibrio_phage	35.5	3.4e-43
WP_061336328.1|1756083_1759317_+	type I-F CRISPR-associated helicase Cas3	NA	A0A2I7RCU8	Vibrio_phage	27.9	2.2e-83
>prophage 3
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	1844311	1908510	5084081	integrase,capsid,portal,holin,terminase,protease,tail,head	Escherichia_phage(42.86%)	80	1859395:1859454	1903773:1903837
WP_000156501.1|1844311_1846072_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877153.1|1846257_1846710_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001350588.1|1846787_1847828_-	porin OmpA	NA	NA	NA	NA	NA
WP_000287750.1|1848183_1848693_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_000839136.1|1848911_1849541_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA	NA
WP_000875041.1|1849503_1851666_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261236.1|1851675_1852122_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_001350178.1|1852244_1854299_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.9	1.0e-20
WP_001295939.1|1854330_1854789_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847791.1|1854884_1855547_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000665217.1|1855719_1856133_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_001295356.1|1856177_1856495_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000116315.1|1856552_1857743_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000048217.1|1857837_1858116_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904439.1|1858112_1858442_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000375136.1|1858533_1859193_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	55.3	4.0e-48
1859395:1859454	attL	TTATTTGGCGGAAGCGCAGAGATTCGAACTCTGGAACCCTTTCGGGTCGCCGGTTTTCAA	NA	NA	NA	NA
WP_072300524.1|1859600_1860620_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	50.0	5.7e-86
WP_000273158.1|1860588_1860840_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_061356920.1|1860906_1863378_-	exonuclease	NA	A0A192Y6E0	Salmonella_phage	58.8	3.8e-59
WP_001098749.1|1863458_1863662_-	DUF1482 family protein	NA	NA	NA	NA	NA
WP_000449182.1|1863664_1863847_-	cell division inhibition protein DicB	NA	NA	NA	NA	NA
WP_042054074.1|1864124_1864400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394568.1|1864592_1864982_-	hypothetical protein	NA	A0A2R2Z306	Escherichia_phage	39.3	1.9e-21
WP_000379585.1|1864993_1865146_-	DUF1391 family protein	NA	M4QQ57	Salicola_phage	53.2	2.3e-07
WP_000444616.1|1865419_1866064_-	LexA family transcriptional regulator	NA	O48389	Streptococcus_phage	36.5	6.8e-08
WP_001261751.1|1866162_1866390_+	cell division protein	NA	NA	NA	NA	NA
WP_001406730.1|1866386_1866812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095680.1|1866835_1867798_+	DNA-binding protein	NA	U5P0A0	Shigella_phage	50.8	2.3e-84
WP_040072813.1|1867842_1868637_+	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	49.6	5.0e-53
WP_040072802.1|1868653_1869076_+	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	89.2	7.4e-64
WP_072277868.1|1869076_1869490_+	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	99.2	4.6e-58
WP_040072799.1|1869540_1869753_+	hypothetical protein	NA	A0A2R2Z310	Escherichia_phage	88.6	4.9e-32
WP_040072798.1|1869785_1870004_+	DUF4014 family protein	NA	A0A2R2Z311	Escherichia_phage	94.4	8.0e-30
WP_001229296.1|1870005_1870371_+	HNH endonuclease	NA	A0A2R2Z2X9	Escherichia_phage	100.0	5.1e-69
WP_000206826.1|1870367_1870712_+	hypothetical protein	NA	A0A2R2Z2X8	Escherichia_phage	99.1	3.8e-58
WP_000220601.1|1870916_1871216_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2R2Z2Y1	Escherichia_phage	100.0	1.8e-51
WP_040072796.1|1871221_1871479_-	type II toxin-antitoxin system ParD family antitoxin	NA	A0A0N7C055	Escherichia_phage	85.5	7.3e-30
WP_001429486.1|1871642_1871921_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	4.3e-12
WP_032248510.1|1871922_1872972_+	DUF968 domain-containing protein	NA	U5P0K4	Shigella_phage	55.2	1.5e-110
WP_000904120.1|1872984_1873344_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	65.8	7.8e-38
WP_001064892.1|1873340_1874006_+	antiterminator	NA	I6PDF8	Cronobacter_phage	52.4	1.1e-61
WP_000342735.1|1874260_1874974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000917767.1|1875147_1875345_+	hypothetical protein	NA	Q9MC00	Enterobacteria_phage	100.0	2.1e-29
WP_000228659.1|1875495_1876581_+	site-specific DNA-methyltransferase	NA	Q8W637	Enterobacteria_phage	86.0	7.5e-177
WP_061336338.1|1877099_1877378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315537.1|1877736_1878006_-	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
WP_001315536.1|1878205_1878595_+|holin	holin	holin	Q8W636	Enterobacteria_phage	83.1	9.6e-42
WP_000950579.1|1878584_1878863_+|holin	phage holin family protein	holin	A0A0U2SHD1	Escherichia_phage	85.9	7.3e-36
WP_000836751.1|1878864_1879410_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	87.3	5.2e-94
WP_001233879.1|1879570_1879753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_133158975.1|1879909_1880092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000958716.1|1880179_1880389_+	hypothetical protein	NA	A0A1L6Z528	Klebsiella_phage	60.0	5.4e-15
WP_024167509.1|1880512_1880728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001315533.1|1880937_1881126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000874941.1|1881391_1881898_+	DNA-packaging protein	NA	O64316	Escherichia_phage	48.8	1.6e-33
WP_024198454.1|1881869_1883795_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	96.6	0.0e+00
WP_000198149.1|1883791_1883998_+|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_001316944.1|1883994_1885596_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.8	1.2e-311
WP_000123271.1|1885576_1886896_+	S49 family peptidase	NA	A0A2I6TC87	Escherichia_phage	98.2	1.0e-231
WP_001299443.1|1886905_1887238_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	100.0	1.7e-55
WP_000063238.1|1887293_1888319_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	97.9	4.7e-189
WP_000158868.1|1888360_1888756_+	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	95.5	5.7e-58
WP_000752986.1|1888767_1889121_+|tail	tail attachment protein	tail	A0A2R9YJJ5	Escherichia_phage	99.1	2.6e-62
WP_000985116.1|1889132_1889711_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	97.9	7.8e-80
WP_000683105.1|1889707_1890103_+|tail	tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
WP_001401350.1|1890110_1890851_+|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	99.2	5.0e-132
WP_000479153.1|1890866_1891289_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	100.0	6.7e-73
WP_000459457.1|1891270_1891705_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
WP_145768602.1|1891697_1894259_+|tail	phage tail tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	91.7	0.0e+00
WP_000847401.1|1894255_1894585_+|tail	phage tail protein	tail	A0A2R9YJM0	Escherichia_phage	92.7	6.0e-53
WP_145768603.1|1894584_1895283_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	95.7	4.2e-128
WP_145768604.1|1895287_1896031_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	94.7	1.8e-145
WP_000090862.1|1895967_1896570_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	84.2	6.2e-88
WP_145768605.1|1896629_1900109_+	DUF1983 domain-containing protein	NA	A5LH43	Enterobacteria_phage	89.9	0.0e+00
WP_077882139.1|1900167_1902753_+|tail	phage tail protein	tail	U5N099	Enterobacteria_phage	50.1	5.5e-125
WP_042053479.1|1902756_1903287_+|tail	tail fiber assembly protein	tail	A0A0F7LBP0	Escherichia_phage	74.9	4.6e-71
WP_001331914.1|1904291_1905410_+	hydrogenase 1 small subunit	NA	NA	NA	NA	NA
1903773:1903837	attR	TTATTTGGCGGAAGCGCAGAGATTCGAACTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCG	NA	NA	NA	NA
WP_000107398.1|1905406_1907200_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA	NA
WP_001186410.1|1907218_1907926_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_000003636.1|1907922_1908510_+|protease	hydrogenase 1 maturation protease	protease	NA	NA	NA	NA
>prophage 4
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	2042784	2125814	5084081	tRNA,integrase,capsid,lysis,portal,holin,terminase,protease,tail,head	Enterobacteria_phage(44.44%)	94	2038951:2038966	2112855:2112870
2038951:2038966	attL	CAGCCAATGCATTATT	NA	NA	NA	NA
WP_040071628.1|2042784_2043903_-|integrase	tyrosine-type recombinase/integrase	integrase	Q77Z04	Phage_21	44.4	4.5e-84
WP_000003742.1|2043871_2044141_-	excisionase	NA	NA	NA	NA	NA
WP_089551822.1|2044202_2046641_-	exonuclease	NA	A0A192Y6E0	Salmonella_phage	64.1	1.3e-62
WP_001090192.1|2046721_2046925_-	DUF1482 family protein	NA	NA	NA	NA	NA
WP_000449182.1|2046927_2047110_-	cell division inhibition protein DicB	NA	NA	NA	NA	NA
WP_052318772.1|2048134_2048290_-	DUF1391 family protein	NA	M4QQ57	Salicola_phage	53.2	4.0e-07
WP_058055367.1|2048559_2049276_-	helix-turn-helix domain-containing protein	NA	H9C160	Pectobacterium_phage	42.0	8.5e-52
WP_000471549.1|2049325_2049541_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_089551821.1|2049537_2049963_+	Rha family transcriptional regulator	NA	NA	NA	NA	NA
WP_089551820.1|2049986_2050919_+	DNA-binding protein	NA	U5P0A0	Shigella_phage	53.6	9.9e-85
WP_089551825.1|2050963_2051758_+	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	50.4	1.6e-54
WP_032223673.1|2051774_2052194_+	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	86.3	1.2e-61
WP_001406732.1|2052422_2052701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001406733.1|2052753_2052933_-	DUF3606 domain-containing protein	NA	NA	NA	NA	NA
WP_032223676.1|2053424_2054117_+	hypothetical protein	NA	Q858R9	Enterobacteria_phage	95.2	1.3e-121
WP_089551819.1|2054448_2055240_-	hypothetical protein	NA	A0A0M4R2T6	Salmonella_phage	31.8	3.8e-21
WP_001406736.1|2055239_2055458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001013638.1|2055691_2055904_+	type I toxin-antitoxin system Hok family toxin	NA	A0A0P0ZAX5	Stx2-converting_phage	100.0	3.1e-26
WP_021534150.1|2056132_2056492_+	helix-turn-helix transcriptional regulator	NA	L7TKV7	Pseudomonas_virus	46.6	3.6e-19
WP_024187671.1|2056540_2056978_+	toxin	NA	NA	NA	NA	NA
WP_032223678.1|2057401_2057680_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	4.3e-12
WP_061336536.1|2057681_2058740_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	47.7	1.7e-88
WP_061336535.1|2058740_2059118_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	64.5	1.3e-35
WP_050940013.1|2059107_2059479_+	antitermination protein	NA	Q777W5	Enterobacteria_phage	82.5	1.8e-53
WP_050940011.1|2059631_2060450_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917767.1|2060736_2060934_+	hypothetical protein	NA	Q9MC00	Enterobacteria_phage	100.0	2.1e-29
WP_061336534.1|2061044_2062091_+	site-specific DNA-methyltransferase	NA	Q8W637	Enterobacteria_phage	92.4	2.0e-190
WP_032215181.1|2062861_2063251_+|holin	holin	holin	Q9MBZ5	Enterobacteria_phage	83.8	7.1e-45
WP_047649223.1|2063240_2063519_+|holin	phage holin family protein	holin	A0A0U2SHD1	Escherichia_phage	83.7	2.4e-34
WP_050940005.1|2063520_2064066_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	85.5	2.4e-91
WP_050940003.1|2064133_2064415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000867509.1|2065072_2065621_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	86.3	7.2e-59
WP_000622389.1|2065592_2067509_+|terminase	phage terminase large subunit family protein	terminase	O64317	Escherichia_phage	64.8	1.9e-252
WP_000640654.1|2067512_2067722_+|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	49.2	1.0e-10
WP_061355635.1|2067766_2069290_+|portal	phage portal protein	portal	E4WL21	Enterobacteria_phage	63.6	7.6e-183
WP_089586594.1|2069279_2070896_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	53.4	1.0e-100
WP_000598337.1|2070936_2071272_+|head	head decoration protein	head	A0A0K2FIF9	Escherichia_phage	49.1	4.0e-20
WP_000522659.1|2071341_2072370_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	58.7	5.8e-110
WP_000159342.1|2072420_2072801_+	DNA packaging protein	NA	A0A2R9YJP4	Escherichia_phage	61.1	3.6e-09
WP_000753029.1|2072814_2073189_+|tail	tail attachment protein	tail	A0A2R9YJJ5	Escherichia_phage	58.9	3.4e-28
WP_000677086.1|2073175_2073766_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	69.4	7.0e-68
WP_001079403.1|2073762_2074164_+	hypothetical protein	NA	A0A291AWY2	Escherichia_phage	83.5	6.6e-62
WP_000211140.1|2074174_2074915_+|tail	tail protein	tail	K7PGT7	Enterobacteria_phage	85.7	2.4e-110
WP_000478930.1|2074971_2075361_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	66.7	1.2e-39
WP_001434775.1|2075381_2075684_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	73.0	6.1e-36
WP_000371973.1|2075667_2078691_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	75.7	0.0e+00
WP_000402323.1|2078690_2079020_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	82.4	4.9e-47
WP_001152670.1|2079029_2079728_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	85.3	2.5e-117
WP_040073325.1|2079732_2080476_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	91.5	1.2e-141
WP_047656448.1|2080373_2081021_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	80.9	1.2e-97
WP_047649238.1|2081081_2084480_+	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	99.3	0.0e+00
WP_001246633.1|2084541_2085162_+	outer membrane beta-barrel protein Lom	NA	A0A1U8QHD6	Enterobacteria_phage	99.5	5.3e-111
WP_001407643.1|2085226_2087551_+	short-chain dehydrogenase	NA	A0A0K2FIZ6	Escherichia_phage	100.0	6.0e-224
WP_040071529.1|2087550_2088132_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	99.0	9.8e-107
WP_000799406.1|2088364_2089228_-	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	28.7	6.7e-11
WP_000531578.1|2089211_2090348_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	39.8	5.5e-29
WP_000359446.1|2090597_2091824_+	peptidase T	NA	NA	NA	NA	NA
WP_001295435.1|2091872_2092994_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_145768610.1|2093069_2094530_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
WP_001265481.1|2094529_2095201_-	two-component system response regulator PhoP	NA	NA	NA	NA	NA
WP_000423737.1|2095369_2096740_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	44.9	1.6e-107
WP_001295971.1|2096743_2097385_-	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_001298466.1|2097420_2098527_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000476093.1|2098580_2099042_-	phosphatase NudJ	NA	NA	NA	NA	NA
WP_001248695.1|2099051_2099705_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000444487.1|2099876_2101127_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
WP_000741335.1|2101240_2102383_-|integrase	tyrosine-type recombinase/integrase	integrase	Q77Z02	Phage_21	100.0	3.6e-206
WP_000088653.1|2102372_2102609_-	excisionase	NA	NA	NA	NA	NA
WP_000490213.1|2102748_2102988_-	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	96.2	4.7e-39
WP_000002139.1|2102971_2103298_-	ASCH domain-containing protein	NA	A5VWB6	Enterobacteria_phage	95.7	9.8e-48
WP_000763374.1|2103297_2103519_-	TraR/DksA family transcriptional regulator	NA	A0A1I9LJM6	Stx_converting_phage	93.2	2.3e-32
WP_021533932.1|2103617_2103899_-	cell division protein ZapA	NA	A0A0P0ZE02	Stx2-converting_phage	95.7	3.0e-45
WP_000548516.1|2103909_2104101_-	DUF1382 family protein	NA	A0A0P0ZC67	Stx2-converting_phage	93.7	1.8e-25
WP_000149537.1|2104073_2104256_-	DUF1317 domain-containing protein	NA	A0A1U8QQC1	Enterobacteria_phage	98.3	1.8e-27
WP_000186848.1|2104252_2104933_-	YqaJ viral recombinase family protein	NA	A0A0P0ZCD4	Stx2-converting_phage	100.0	1.6e-132
WP_000100847.1|2104929_2105715_-	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
WP_061336283.1|2105720_2106017_-	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	99.0	8.1e-49
WP_023148105.1|2106092_2106383_-	hypothetical protein	NA	K7P6H3	Enterobacteria_phage	85.1	5.0e-27
WP_000858975.1|2106893_2107583_-	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	75.0	2.8e-92
WP_001067458.1|2107687_2107918_+	helix-turn-helix domain-containing protein	NA	A0A2H4FNF3	Salmonella_phage	68.0	1.5e-21
WP_061336286.1|2108612_2109542_+	replication protein	NA	A0A0M5M7Y1	Salmonella_phage	63.8	8.9e-110
WP_016232954.1|2109538_2110240_+	replication protein P	NA	M1FJ72	Enterobacteria_phage	97.0	3.3e-125
WP_021522052.1|2110484_2114393_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
2112855:2112870	attR	AATAATGCATTGGCTG	NA	NA	NA	NA
WP_000700202.1|2114429_2115473_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001053004.1|2115919_2116375_+	DNA base-flipping protein YbcN	NA	I6PD71	Cronobacter_phage	66.9	1.2e-59
WP_000224907.1|2116374_2116545_+	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	67.9	5.3e-13
WP_000774475.1|2116537_2116828_+	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	93.8	1.3e-46
WP_001099697.1|2116824_2117187_+	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	95.7	7.3e-60
WP_000971095.1|2117183_2117324_+	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	72.1	1.7e-09
WP_000737271.1|2117981_2119064_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	80.1	1.6e-166
WP_000839596.1|2119653_2119869_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_145768720.1|2120048_2123459_+	DUF1983 domain-containing protein	NA	A0A0K2FI38	Escherichia_phage	90.5	0.0e+00
WP_061336490.1|2123517_2125539_+|tail	phage tail protein	tail	A0A0E3M0V5	Enterobacteria_phage	66.9	1.5e-183
WP_000654172.1|2125535_2125814_+	hypothetical protein	NA	A0A0E3JSQ1	Enterobacteria_phage	55.4	9.9e-25
>prophage 5
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	2720043	2765824	5084081	terminase,holin,tail,integrase	Escherichia_phage(45.0%)	71	2714308:2714322	2774575:2774589
2714308:2714322	attL	GGCAAATGACCAAAC	NA	NA	NA	NA
WP_000812741.1|2720043_2720700_-	protein-serine/threonine phosphatase	NA	A0A2D1GLI5	Escherichia_phage	50.5	1.4e-56
WP_064236832.1|2721670_2722078_-|tail	phage tail protein	tail	A0A0F7LDZ0	Escherichia_phage	76.2	4.8e-28
WP_097501454.1|2722077_2723130_-	hypothetical protein	NA	A0A0M3ULD8	Salmonella_phage	53.5	1.1e-28
WP_097501453.1|2723129_2723810_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	77.9	3.8e-102
WP_064237210.1|2723806_2725006_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	84.1	2.6e-186
WP_089529528.1|2725005_2725359_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	89.7	1.5e-54
WP_089529529.1|2725358_2726111_-	translation initiation factor IF-2	NA	A0A2H4J8H6	uncultured_Caudovirales_phage	64.0	1.1e-89
WP_089529530.1|2726219_2726561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097467478.1|2726831_2727872_-	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	53.6	7.9e-99
WP_000648663.1|2727874_2728177_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	55.0	2.6e-26
WP_000346976.1|2728180_2728831_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	65.3	1.8e-61
WP_097501451.1|2728830_2730837_-	lytic transglycosylase catalytic	NA	A0A0M4REK7	Salmonella_phage	75.1	5.9e-159
WP_023141050.1|2730826_2731003_-	hypothetical protein	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	70.0	1.6e-12
WP_024233248.1|2731014_2731467_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	73.3	1.6e-56
WP_000109249.1|2731470_2731911_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	75.3	7.0e-57
WP_097501449.1|2731921_2733067_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.0	1.6e-161
WP_001349562.1|2733070_2733634_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	76.3	3.4e-80
WP_001142484.1|2733608_2733998_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	96.1	1.1e-66
WP_024233246.1|2733984_2734539_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	84.2	4.4e-80
WP_000042170.1|2734535_2734943_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	95.6	4.3e-69
WP_001040697.1|2734908_2735277_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	88.5	1.4e-53
WP_000627490.1|2735317_2736259_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	86.9	1.4e-155
WP_001066733.1|2736270_2736777_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	80.5	9.8e-71
WP_089529430.1|2736780_2738001_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	89.3	3.4e-202
WP_000184958.1|2738015_2738750_-	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	87.1	9.5e-99
WP_097501447.1|2738640_2740107_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	91.6	6.7e-261
WP_001130793.1|2740106_2741729_-	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	95.6	0.0e+00
WP_097501445.1|2741731_2742283_-|terminase	terminase small subunit	terminase	G0ZND3	Cronobacter_phage	69.8	5.5e-67
WP_001472362.1|2742236_2742851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072243631.1|2743150_2743426_-	hypothetical protein	NA	S5FXQ4	Shigella_phage	71.8	6.0e-22
WP_059214839.1|2743313_2743706_-	DUF2570 domain-containing protein	NA	Q8SBD9	Shigella_phage	83.7	8.7e-51
WP_001194114.1|2743689_2744166_-	glycoside hydrolase family protein	NA	Q8SBE0	Shigella_phage	96.8	6.0e-86
WP_000781775.1|2744169_2744511_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	90.1	6.2e-53
WP_076487083.1|2744855_2745425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_097501443.1|2745481_2745754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076487081.1|2745786_2745972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097501442.1|2745891_2746503_-	ORF6N domain-containing protein	NA	A0A0N7C203	Escherichia_phage	99.3	1.0e-53
WP_072025137.1|2746552_2746777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000640150.1|2746773_2747328_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	71.6	2.6e-72
WP_000228038.1|2747324_2747615_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	89.6	3.3e-47
WP_047087957.1|2747614_2748214_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	92.0	8.5e-106
WP_097501440.1|2748696_2748909_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	70.0	1.5e-17
WP_145768630.1|2748953_2749175_+	hypothetical protein	NA	Q7Y2Q9	Escherichia_phage	83.6	2.7e-17
WP_097501438.1|2749126_2749507_-	hypothetical protein	NA	A0A222YWE8	Escherichia_phage	50.5	2.7e-20
WP_001229294.1|2749503_2749869_-	HNH endonuclease	NA	A0A2R2Z2X9	Escherichia_phage	99.2	3.3e-68
WP_097501436.1|2749870_2750089_-	DUF4014 family protein	NA	A0A2R2Z311	Escherichia_phage	90.3	1.5e-28
WP_123009280.1|2750181_2750580_-	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	96.6	2.8e-57
WP_097501433.1|2750515_2751103_-	ead/Ea22-like family protein	NA	A0A2D1GLY5	Escherichia_phage	84.0	2.8e-77
WP_097501431.1|2751089_2751389_-	DUF4406 domain-containing protein	NA	A0A0U2SAZ1	Escherichia_phage	81.8	2.8e-41
WP_097501429.1|2751385_2751805_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	93.3	9.6e-64
WP_047087965.1|2751820_2752582_-	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	85.8	5.7e-115
WP_097501426.1|2752604_2753351_-	ATP-binding protein	NA	V5UQI5	Shigella_phage	80.9	4.8e-114
WP_010358686.1|2753357_2754146_-	hypothetical protein	NA	G9L6A8	Escherichia_phage	65.0	6.7e-42
WP_045174332.1|2754223_2754646_-	hypothetical protein	NA	A0A0U2RXZ9	Escherichia_phage	93.6	1.3e-68
WP_061892277.1|2754629_2754905_-	helix-turn-helix domain-containing protein	NA	A0A0U2S629	Escherichia_phage	100.0	8.9e-42
WP_097501424.1|2755012_2755474_+	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	98.7	4.9e-77
WP_097467415.1|2755722_2755941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001419881.1|2755906_2756101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000560226.1|2756496_2756718_+	killing protein KilR	NA	A0A0U2RTC4	Escherichia_phage	97.3	6.9e-37
WP_097310669.1|2756717_2756888_+	hypothetical protein	NA	A0A0U2SHB5	Escherichia_phage	91.1	3.0e-24
WP_001417976.1|2756962_2757238_+	hypothetical protein	NA	A0A0U2QW85	Escherichia_phage	92.3	2.2e-40
WP_097419185.1|2757337_2760487_+	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	82.2	0.0e+00
WP_047088016.1|2760501_2761590_+	enterohemolysin	NA	A0A0U2S5Y9	Escherichia_phage	98.9	5.5e-204
WP_021500490.1|2761653_2761848_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	NA	A0A0U2QQP4	Escherichia_phage	100.0	9.0e-33
WP_047087971.1|2761840_2762029_+	DUF1187 family protein	NA	A0A0U2QL97	Escherichia_phage	95.2	3.6e-26
WP_001311878.1|2762135_2762417_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	41.2	1.7e-11
WP_047087972.1|2762382_2763459_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.7	4.1e-98
WP_000984819.1|2763850_2764192_-	YebY family protein	NA	NA	NA	NA	NA
WP_000879320.1|2764204_2765077_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000168747.1|2765080_2765455_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000916763.1|2765593_2765824_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	61.8	1.3e-14
2774575:2774589	attR	GGCAAATGACCAAAC	NA	NA	NA	NA
>prophage 6
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	3109138	3116872	5084081		Enterobacteria_phage(33.33%)	8	NA	NA
WP_001033088.1|3109138_3110245_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	32.9	2.7e-44
WP_097501576.1|3110237_3110705_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_001350333.1|3110691_3111102_-	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
WP_097501575.1|3111119_3111995_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	5.1e-107
WP_001023616.1|3112052_3112952_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.5	8.2e-28
WP_145768641.1|3112951_3114037_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.4	3.7e-99
WP_000183037.1|3114409_3115303_-	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	5.1e-46
WP_089578982.1|3115477_3116872_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	32.2	8.3e-19
>prophage 7
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	3212181	3221506	5084081		Enterobacteria_phage(85.71%)	10	NA	NA
WP_001292784.1|3212181_3213318_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.1	1.2e-161
WP_097501564.1|3213314_3215198_+	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	89.4	0.0e+00
WP_001296231.1|3215322_3215784_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	99.3	3.2e-76
WP_001295430.1|3215824_3216295_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_000598641.1|3216341_3217061_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295431.1|3217057_3218743_-	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_001240394.1|3218964_3219696_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	98.5	3.1e-110
WP_001216963.1|3219755_3219863_+	protein YohO	NA	NA	NA	NA	NA
WP_000783132.1|3219843_3220575_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_000569345.1|3220579_3221506_-	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	1.3e-23
>prophage 8
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	3430139	3474855	5084081	plate,tRNA,integrase,capsid,portal,holin,terminase,tail,head	Enterobacteria_phage(86.36%)	55	3433145:3433164	3468914:3468933
WP_001283598.1|3430139_3430952_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_001289178.1|3430951_3431965_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000004835.1|3432030_3433188_-	4-phosphoerythronate dehydrogenase PdxB	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.4	4.6e-23
3433145:3433164	attL	TTTTCATCAACAAGGATTTT	NA	NA	NA	NA
WP_001560988.1|3433346_3434351_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0M4RTQ0	Salmonella_phage	55.7	3.4e-99
WP_112871172.1|3434447_3434999_-	helix-turn-helix domain-containing protein	NA	Q1JS29	Enterobacteria_phage	41.7	2.3e-12
WP_000004248.1|3435147_3435435_+	hypothetical protein	NA	A0A0M4RCW1	Salmonella_phage	53.7	6.7e-24
WP_001560991.1|3435446_3435788_+	DUF4761 family protein	NA	A0A0A7NV42	Enterobacteria_phage	91.4	1.9e-54
WP_001560992.1|3435798_3436077_+	hypothetical protein	NA	A0A0A7NRX5	Enterobacteria_phage	80.4	2.4e-34
WP_001560993.1|3436088_3436331_+	DUF4754 family protein	NA	A0A0A7NQ71	Enterobacteria_phage	73.8	4.6e-26
WP_001560994.1|3436327_3436441_+	hypothetical protein	NA	A0A0A7NPW7	Enterobacteria_phage	89.2	2.6e-08
WP_001560997.1|3436913_3437243_+	hypothetical protein	NA	A0A077KB17	Edwardsiella_phage	39.8	7.9e-13
WP_001560998.1|3437242_3437446_+	hypothetical protein	NA	A0A0A7NPS8	Enterobacteria_phage	100.0	4.0e-31
WP_000153678.1|3437442_3437688_+	winged helix-turn-helix domain-containing protein	NA	A0A0A7NV47	Enterobacteria_phage	97.5	5.7e-40
WP_113945678.1|3437684_3437984_+	hypothetical protein	NA	A0A0A7NRX6	Enterobacteria_phage	90.8	1.1e-40
WP_113945680.1|3438306_3438537_+	derepression protein	NA	A0A0A7NV48	Enterobacteria_phage	94.7	7.7e-31
WP_097501621.1|3438609_3438975_+	hypothetical protein	NA	A0A0A7NRY1	Enterobacteria_phage	95.9	1.5e-60
WP_123009285.1|3438981_3441804_+	replication endonuclease	NA	A0A0A7NQ77	Enterobacteria_phage	97.6	0.0e+00
WP_089635783.1|3441880_3442840_+	recombinase	NA	A0A0A7NPX4	Enterobacteria_phage	99.4	1.3e-180
WP_000211256.1|3442844_3443156_+	chromosome partitioning protein	NA	A0A0A7NPT5	Enterobacteria_phage	97.1	5.0e-49
WP_001561007.1|3443219_3443555_+	hypothetical protein	NA	A0A0A7NV51	Enterobacteria_phage	95.4	2.6e-51
WP_024169082.1|3443721_3444132_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_001561011.1|3444128_3444473_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_097501622.1|3445009_3446056_-|portal	phage portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	99.7	3.3e-206
WP_001561013.1|3446055_3447807_-|terminase	phage terminase	terminase	A0A0A7NV54	Enterobacteria_phage	98.5	0.0e+00
WP_001262655.1|3447961_3448798_+|capsid	phage capsid scaffolding protein	capsid	A0A0A7NRY7	Enterobacteria_phage	99.6	2.7e-150
WP_001561014.1|3448821_3449874_+|capsid	phage major capsid protein, P2 family	capsid	A0A0A7NQ82	Enterobacteria_phage	96.0	1.0e-191
WP_001561015.1|3449919_3450720_+|terminase	phage small terminase subunit	terminase	A0A0A7NPX9	Enterobacteria_phage	92.5	3.2e-132
WP_000063094.1|3450821_3451316_+|head	head completion/stabilization protein	head	A0A0A7NPU2	Enterobacteria_phage	98.2	3.0e-88
WP_001561017.1|3451315_3451570_+|tail	phage tail protein	tail	A0A0A7NV57	Enterobacteria_phage	100.0	1.0e-31
WP_000104350.1|3451517_3451841_+|holin	holin	holin	A0A0A7NRY9	Enterobacteria_phage	99.1	1.6e-50
WP_000072327.1|3451837_3452230_+	M15 family metallopeptidase	NA	A0A0A7NQ86	Enterobacteria_phage	100.0	5.8e-71
WP_145768653.1|3452226_3452784_+	DUF2570 domain-containing protein	NA	A0A0A7NPY2	Enterobacteria_phage	94.8	1.3e-63
WP_000920594.1|3452770_3453238_+|tail	phage tail protein	tail	A0A0A7NPU6	Enterobacteria_phage	100.0	2.6e-86
WP_001761061.1|3453230_3453866_+	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	99.5	4.1e-114
WP_001271938.1|3453862_3454444_+|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	99.0	2.9e-103
WP_000213453.1|3454440_3454791_+|plate	baseplate assembly protein	plate	A0A0A7NQ90	Enterobacteria_phage	99.1	6.0e-59
WP_001561021.1|3454794_3455691_+|plate	phage baseplate assembly protein	plate	A0A0A7NPY5	Enterobacteria_phage	98.0	5.1e-155
WP_001561022.1|3455683_3456211_+|tail	phage tail protein I	tail	A0A0A7NPV1	Enterobacteria_phage	88.9	4.3e-85
WP_107131040.1|3456221_3459002_+|tail	phage tail protein	tail	Q858V4	Yersinia_virus	65.8	0.0e+00
WP_001561024.1|3459005_3459533_+|tail	tail fiber assembly protein	tail	A0A077SK10	Escherichia_phage	90.3	3.3e-85
WP_000979947.1|3459787_3460276_-|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	98.8	4.0e-85
WP_001561025.1|3460288_3463096_-|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	96.6	0.0e+00
WP_000333503.1|3463082_3463238_-|tail	GpE family phage tail protein	tail	A0A0A7NQ96	Enterobacteria_phage	96.1	9.7e-22
WP_000651572.1|3463246_3463621_-|tail	tail protein	tail	A0A0A7NPZ0	Enterobacteria_phage	73.2	9.0e-37
WP_000290462.1|3463676_3464189_-|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	97.1	1.5e-90
WP_001561026.1|3464188_3465373_-|tail	phage tail sheath family protein	tail	A0A0A7NV69	Enterobacteria_phage	97.5	1.1e-221
WP_001561027.1|3465530_3466640_+	phage late control D family protein	NA	A0A0A7NQ97	Enterobacteria_phage	94.0	1.8e-194
WP_000488106.1|3466680_3466941_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_000078916.1|3467132_3467273_+	Hok/Gef family protein	NA	A0A0A7NPZ4	Enterobacteria_phage	97.8	1.5e-18
WP_001173929.1|3467535_3467868_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_001539236.1|3467872_3468766_+	type VI secretion-associated protein	NA	NA	NA	NA	NA
WP_000615837.1|3469034_3470030_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA	NA
3468914:3468933	attR	TTTTCATCAACAAGGATTTT	NA	NA	NA	NA
WP_000127769.1|3470026_3471205_-	MFS transporter	NA	NA	NA	NA	NA
WP_000817178.1|3471469_3472690_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
WP_000683753.1|3472848_3474855_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
>prophage 9
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	3624520	3665650	5084081	terminase,integrase,holin,tail	Escherichia_phage(62.79%)	46	3642921:3642938	3672581:3672598
WP_001344399.1|3624520_3624694_+	DUF2633 family protein	NA	G9L6F2	Escherichia_phage	100.0	6.8e-24
WP_000669398.1|3625007_3625523_+	glycine zipper 2TM domain-containing protein	NA	G9L6F1	Escherichia_phage	99.4	2.9e-62
WP_000755178.1|3625538_3626078_+	DUF5384 family protein	NA	G9L6F0	Escherichia_phage	98.9	1.4e-43
WP_061336249.1|3626273_3626771_-	DUF2514 family protein	NA	A0A193GYU6	Enterobacter_phage	68.3	9.1e-53
WP_061336248.1|3626767_3627397_-	glycoside hydrolase family 19 protein	NA	G9L6E8	Escherichia_phage	97.1	1.2e-113
WP_000256103.1|3627386_3627695_-|holin	phage holin family protein	holin	G9L6E7	Escherichia_phage	93.1	4.6e-47
WP_061336247.1|3627681_3628086_-	hypothetical protein	NA	G9L6E6	Escherichia_phage	94.0	1.8e-59
WP_061336246.1|3628392_3631512_-	peptidase S74	NA	A5VW57	Enterobacteria_phage	95.5	0.0e+00
WP_110221350.1|3632124_3632211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000451652.1|3632966_3633494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042035211.1|3633515_3636536_-	hypothetical protein	NA	G9L6D4	Escherichia_phage	96.8	0.0e+00
WP_061336245.1|3636535_3639244_-	transglycosylase SLT domain-containing protein	NA	G9L6D3	Escherichia_phage	90.8	0.0e+00
WP_000332877.1|3639243_3639819_-	hypothetical protein	NA	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	95.3	7.0e-81
WP_000568023.1|3639818_3640283_-	hypothetical protein	NA	G9L6D1	Escherichia_phage	100.0	8.4e-85
WP_001702503.1|3640282_3642754_-	hypothetical protein	NA	G9L6D0	Escherichia_phage	98.9	0.0e+00
WP_000179259.1|3642753_3643359_-	hypothetical protein	NA	G9L6C9	Escherichia_phage	99.5	1.1e-111
3642921:3642938	attL	GCCAGGCCAACGCCTCCA	NA	NA	NA	NA
WP_000424495.1|3643358_3643682_-	hypothetical protein	NA	A0A0F6R8M8	Escherichia_coli_O157_typing_phage	98.1	2.6e-53
WP_000012377.1|3643732_3644068_-	hypothetical protein	NA	G9L6C7	Escherichia_phage	100.0	7.7e-56
WP_021525785.1|3644078_3644516_-	hypothetical protein	NA	G9L6C6	Escherichia_phage	99.3	8.2e-74
WP_061336244.1|3644567_3645554_-	hypothetical protein	NA	A0A0F6TJQ9	Escherichia_coli_O157_typing_phage	94.8	1.3e-180
WP_021537273.1|3645568_3646264_-	hypothetical protein	NA	G9L6C4	Escherichia_phage	98.7	5.1e-94
WP_021517651.1|3646266_3646563_-	hypothetical protein	NA	G9L6C3	Escherichia_phage	99.0	3.7e-46
WP_000852419.1|3646559_3648239_-|tail	tail protein	tail	G9L6C2	Escherichia_phage	99.5	3.6e-303
WP_000335899.1|3648253_3648460_-	hypothetical protein	NA	G9L6C1	Escherichia_phage	100.0	6.0e-11
WP_024227452.1|3649189_3649411_-	hypothetical protein	NA	H2D0E0	Salmonella_phage	66.7	2.2e-06
WP_061336242.1|3649729_3651205_-	hypothetical protein	NA	A0A0F6TK57	Escherichia_coli_O157_typing_phage	99.2	4.9e-296
WP_061336241.1|3651201_3651876_-|terminase	terminase small subunit	terminase	Q287B7	Escherichia_phage	99.6	5.8e-119
WP_001129688.1|3651916_3652255_-	hypothetical protein	NA	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	94.6	3.3e-54
WP_061336240.1|3652247_3652529_-	ASCH domain-containing protein	NA	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	93.5	1.6e-46
WP_000376714.1|3652521_3652806_-	DUF4752 family protein	NA	G9L657	Escherichia_phage	98.9	1.0e-48
WP_001231252.1|3653850_3654195_-	DUF1064 domain-containing protein	NA	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	98.2	4.8e-61
WP_001066741.1|3654312_3655098_-	hypothetical protein	NA	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	99.6	3.6e-152
WP_068891855.1|3655094_3655910_-	primosomal protein	NA	Q286X4	Escherichia_phage	95.3	1.5e-116
WP_000402894.1|3655925_3656126_-	hypothetical protein	NA	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	97.0	1.0e-31
WP_001282459.1|3656276_3656507_-	hypothetical protein	NA	G9L6A7	Escherichia_phage	100.0	2.6e-39
WP_061336237.1|3656661_3657246_+	helix-turn-helix transcriptional regulator	NA	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	99.0	3.0e-103
WP_001567233.1|3657554_3657854_+	hypothetical protein	NA	G9L6A4	Escherichia_phage	98.0	8.4e-46
WP_001567234.1|3657850_3658672_+	hypothetical protein	NA	G9L6A3	Escherichia_phage	98.2	2.0e-161
WP_001567235.1|3658668_3659550_+	recombinase RecT	NA	G9L6A2	Escherichia_phage	98.6	2.6e-159
WP_000675390.1|3659599_3659848_+	AlpA family phage regulatory protein	NA	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	100.0	3.6e-42
WP_001335975.1|3660005_3660257_+	PerC family transcriptional regulator	NA	G9L6A0	Escherichia_phage	100.0	3.1e-41
WP_000163466.1|3660249_3660900_+	hypothetical protein	NA	G9L699	Escherichia_phage	97.7	5.2e-125
WP_001077943.1|3660896_3661091_+	DUF1382 family protein	NA	G9L698	Escherichia_phage	96.9	2.8e-26
WP_021543544.1|3661094_3662345_-|integrase	site-specific integrase	integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	99.0	1.0e-238
WP_000138282.1|3662537_3664115_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA	NA
WP_001296289.1|3664183_3665650_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.9	8.8e-88
3672581:3672598	attR	TGGAGGCGTTGGCCTGGC	NA	NA	NA	NA
>prophage 10
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	3705218	3777625	5084081	tRNA,holin,terminase,tail,head	Salmonella_phage(48.0%)	78	NA	NA
WP_000940019.1|3705218_3705959_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_000553451.1|3706077_3706881_+	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_001350883.1|3707025_3707880_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_145768658.1|3708070_3709351_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
WP_000244186.1|3709342_3710482_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_001305234.1|3710850_3711273_+	DoxX family protein	NA	NA	NA	NA	NA
WP_145768659.1|3711432_3712305_-	aldose 1-epimerase	NA	NA	NA	NA	NA
WP_001393448.1|3712316_3713378_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_001276657.1|3713443_3714442_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000493462.1|3714466_3715978_-	sugar ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	28.9	2.5e-08
WP_001124929.1|3716000_3716984_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001331827.1|3717080_3720362_-	DUF5107 domain-containing protein	NA	NA	NA	NA	NA
WP_001200772.1|3720479_3721673_+	ROK family protein	NA	NA	NA	NA	NA
WP_000919159.1|3721736_3722990_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	7.8e-101
WP_000883117.1|3723318_3724509_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_000717694.1|3724553_3724892_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_145768660.1|3724952_3726287_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	38.2	1.4e-10
WP_001215879.1|3726276_3726990_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
WP_001350885.1|3727154_3728582_-	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	24.9	3.0e-16
WP_000970064.1|3729157_3733045_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	59.2	6.5e-130
WP_000734193.1|3733303_3734860_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA	NA
WP_001298403.1|3734856_3735393_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
WP_000190644.1|3735417_3736053_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_001298401.1|3736261_3737110_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001253100.1|3737420_3737687_+	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	83.0	2.7e-35
WP_021517243.1|3737988_3738834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021517244.1|3738838_3739153_-	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	91.0	5.6e-40
WP_071345120.1|3739182_3739701_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	57.5	4.0e-51
WP_000356480.1|3739700_3740303_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	92.0	3.2e-100
WP_001106826.1|3740274_3740715_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	71.0	1.5e-54
WP_145768661.1|3740736_3741426_-	hypothetical protein	NA	A0A0M3ULD8	Salmonella_phage	67.8	4.1e-27
WP_000049950.1|3741425_3742106_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	78.8	2.6e-103
WP_021517247.1|3742102_3743302_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	83.4	3.2e-184
WP_021517248.1|3743301_3743655_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	90.6	4.0e-55
WP_021517249.1|3743654_3744407_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	65.5	1.3e-87
WP_000466689.1|3744466_3744706_-	DUF4282 domain-containing protein	NA	A0A077KGV8	Edwardsiella_phage	47.5	5.6e-08
WP_001214054.1|3744759_3745101_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	85.7	1.4e-33
WP_021517250.1|3745104_3746166_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	82.5	5.3e-159
WP_000155116.1|3746168_3746471_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	90.0	4.1e-48
WP_021517251.1|3746470_3747058_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	88.5	9.0e-84
WP_021517252.1|3747057_3749046_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	74.3	1.5e-271
WP_071834176.1|3749035_3749212_-	NTP pyrophosphohydrolase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	70.0	2.1e-12
WP_000393958.1|3749223_3749676_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	72.0	1.8e-55
WP_000109249.1|3749679_3750120_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	75.3	7.0e-57
WP_097501449.1|3750130_3751276_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.0	1.6e-161
WP_001349562.1|3751279_3751843_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	76.3	3.4e-80
WP_001142484.1|3751817_3752207_-	hypothetical protein	NA	A0A0M3ULK0	Salmonella_phage	96.1	1.1e-66
WP_021517253.1|3752193_3752748_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	83.7	2.6e-80
WP_021517254.1|3752744_3753152_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	94.1	1.4e-67
WP_021517255.1|3753117_3753339_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	68.6	7.7e-12
WP_001473318.1|3753381_3754323_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	86.9	1.4e-155
WP_001066731.1|3754334_3754841_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	80.5	1.7e-70
WP_021517256.1|3754844_3756065_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	88.5	3.8e-201
WP_137653612.1|3756079_3756814_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	84.7	1.5e-96
WP_001551494.1|3756704_3758171_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	92.0	6.0e-262
WP_001130793.1|3758170_3759793_-	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	95.6	0.0e+00
WP_000162796.1|3759795_3760368_-|terminase	terminase small subunit	terminase	A0A2H4J480	uncultured_Caudovirales_phage	69.6	1.4e-60
WP_000779566.1|3760429_3760954_-	hypothetical protein	NA	K7P6W1	Enterobacteria_phage	66.9	4.5e-42
WP_021517258.1|3760937_3761414_-	glycoside hydrolase family protein	NA	Q8SBE0	Shigella_phage	95.6	4.6e-86
WP_000781776.1|3761417_3761759_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	91.9	2.8e-53
WP_001174014.1|3762203_3762545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145768662.1|3762576_3762999_-	antitermination protein	NA	Q8W638	Enterobacteria_phage	63.3	6.8e-41
WP_000868571.1|3763044_3763275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_089627707.1|3763596_3765858_-	DNA primase	NA	NA	NA	NA	NA
WP_000016208.1|3765861_3766062_-	transcriptional regulator	NA	K7RWG7	Bacteriophage	50.0	1.0e-07
WP_021517261.1|3766203_3766878_+	helix-turn-helix transcriptional regulator	NA	B6SCU0	Bacteriophage	51.1	1.4e-59
WP_001551500.1|3767253_3767823_-	hypothetical protein	NA	K7P861	Enterobacteria_phage	52.7	3.2e-38
WP_000051352.1|3768193_3769096_+	hypothetical protein	NA	Q3LZP9	Bacteriophage	54.4	6.1e-07
WP_021517262.1|3769098_3770400_+	DUF2800 domain-containing protein	NA	B6SCX9	Bacteriophage	55.7	6.1e-133
WP_000769005.1|3770415_3770964_+	DUF2815 family protein	NA	Q775A5	Bordetella_phage	65.9	2.1e-66
WP_021517263.1|3771016_3771646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021517264.1|3771692_3773756_+	hypothetical protein	NA	Q775A3	Bordetella_phage	67.2	3.3e-274
WP_001157067.1|3773820_3774582_+	nucleotide-binding protein	NA	NA	NA	NA	NA
WP_000065111.1|3774816_3775011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021517265.1|3775010_3775280_+	VRR-NUC domain-containing protein	NA	B6SD64	Bacteriophage	68.2	4.6e-27
WP_137484464.1|3775309_3775570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024189391.1|3775593_3776181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021517267.1|3776233_3777625_+	DEAD/DEAH box helicase	NA	Q3LZN8	Bacteriophage	73.7	8.4e-213
>prophage 11
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	3797077	3898083	5084081	plate,tRNA,integrase,capsid,portal,holin,terminase,protease,tail,head	Shigella_phage(43.66%)	116	3863128:3863143	3907542:3907557
WP_000997387.1|3797077_3798115_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098726.1|3798321_3798741_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
WP_001298618.1|3798809_3799508_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_000082937.1|3799539_3802200_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000949265.1|3802313_3803669_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001370843.1|3803714_3804038_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_001298619.1|3804034_3805333_-	alpha-ketoglutarate permease	NA	Q6JIH2	Burkholderia_virus	31.7	4.8e-45
WP_001331828.1|3805441_3805702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024186649.1|3806633_3806861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001350770.1|3813820_3816394_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.2	5.8e-127
WP_000040118.1|3816523_3817255_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079114.1|3817251_3818232_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197686.1|3818366_3819104_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178456.1|3819373_3819715_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_001386991.1|3819818_3819866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200106.1|3819964_3821125_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000225230.1|3821167_3822289_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168025.1|3822299_3823370_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.2	4.0e-90
WP_001296308.1|3823579_3823945_+	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
WP_001212400.1|3824093_3824612_+	YfiR family protein	NA	NA	NA	NA	NA
WP_000969016.1|3824601_3825828_+	diguanylate cyclase DgcN	NA	NA	NA	NA	NA
WP_000589793.1|3825843_3826326_+	OmpA family protein	NA	NA	NA	NA	NA
WP_000065253.1|3826402_3826750_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000264777.1|3826791_3827559_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043335.1|3827589_3828138_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256450.1|3828156_3828405_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460035.1|3828541_3829903_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001338897.1|3830069_3830861_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_010723175.1|3830881_3832168_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001332400.1|3832222_3832816_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059176.1|3832938_3833817_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880938.1|3833902_3835564_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_063122282.1|3835712_3836054_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_145768665.1|3836115_3836406_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000600193.1|3836395_3836872_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA	NA
WP_000162574.1|3837003_3837486_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
WP_000124726.1|3838247_3839456_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.1	6.6e-105
WP_001183325.1|3839459_3841418_+	NACHT domain-containing protein	NA	X5JAK5	Clostridium_phage	36.3	3.9e-67
WP_000446131.1|3841635_3842208_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	96.8	6.5e-95
WP_000638634.1|3842281_3842782_-	transactivation protein	NA	NA	NA	NA	NA
WP_061352982.1|3842778_3843513_-	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	97.5	7.4e-128
WP_001149160.1|3844065_3844332_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	100.0	4.9e-45
WP_000980234.1|3844328_3844928_+	ash family protein	NA	Q7M2A7	Enterobacteria_phage	81.8	7.8e-51
WP_001244666.1|3844920_3845208_+	hypothetical protein	NA	Q7M2A0	Enterobacteria_phage	96.8	3.3e-47
WP_000110238.1|3845453_3846662_+	hypothetical protein	NA	E5E3X4	Burkholderia_phage	38.6	7.9e-34
WP_145768666.1|3846696_3848130_-	DNA (cytosine-5-)-methyltransferase	NA	E5E3X6	Burkholderia_phage	50.1	1.9e-106
WP_000355484.1|3848533_3849307_+	hypothetical protein	NA	G9IA57	Pseudomonas_phage	38.5	2.4e-36
WP_021567259.1|3849367_3849922_-	site-specific DNA recombinase	NA	A0A1S6L009	Salmonella_phage	88.4	3.3e-88
WP_032249504.1|3849951_3850338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024166876.1|3850339_3850777_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	68.5	4.5e-48
WP_004015219.1|3850748_3851351_-|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	88.0	1.9e-97
WP_145768667.1|3851350_3852121_-|tail	tail fiber protein	tail	U5P0I1	Shigella_phage	94.4	2.7e-51
WP_000383543.1|3852124_3852709_-	YmfQ family protein	NA	O22003	Shigella_phage	99.5	4.1e-113
WP_145768668.1|3852699_3853758_-|plate	baseplate J/gp47 family protein	plate	M1FQW3	Enterobacteria_phage	98.0	8.9e-199
WP_000424732.1|3853744_3854170_-	hypothetical protein	NA	U5P0R9	Shigella_phage	100.0	2.3e-81
WP_001259075.1|3854169_3854718_-|plate	phage baseplate assembly protein	plate	Q8SBG6	Shigella_phage	99.5	8.7e-97
WP_145768669.1|3854717_3855797_-|plate	baseplate protein	plate	Q8SBG7	Shigella_phage	98.9	6.5e-205
WP_145768670.1|3855793_3857122_-	DNA circularization protein	NA	Q8SBG8	Shigella_phage	98.2	1.6e-245
WP_097703514.1|3857182_3859018_-|tail	phage tail tape measure protein	tail	S5FM63	Shigella_phage	99.5	1.0e-306
WP_001314907.1|3859010_3859193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000661051.1|3859159_3859429_-|tail	phage tail assembly protein	tail	M1FPE4	Enterobacteria_phage	98.9	6.0e-43
WP_000090998.1|3859428_3859785_-	hypothetical protein	NA	U5P076	Shigella_phage	100.0	5.3e-63
WP_145768671.1|3859784_3861281_-|tail	phage tail protein	tail	S5FKL0	Shigella_phage	98.0	2.0e-273
WP_000497751.1|3861264_3861435_-	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	100.0	9.3e-26
WP_000779296.1|3861443_3862004_-	hypothetical protein	NA	Q8SBH4	Shigella_phage	100.0	6.1e-106
WP_000224835.1|3862000_3862507_-	hypothetical protein	NA	M1FPE2	Enterobacteria_phage	92.9	1.3e-83
WP_021534251.1|3862481_3862892_-|head	phage head closure protein	head	M1FJ87	Enterobacteria_phage	95.6	8.0e-71
WP_000927711.1|3862888_3863212_-|head,tail	phage gp6-like head-tail connector protein	head,tail	U5P072	Shigella_phage	99.1	1.1e-56
3863128:3863143	attL	CCAGCAGTTGCAGATG	NA	NA	NA	NA
WP_000601363.1|3863214_3863415_-	hypothetical protein	NA	S5FNU1	Shigella_phage	98.5	1.7e-26
WP_094281118.1|3863464_3864670_-|capsid	phage major capsid protein	capsid	M1FPN2	Enterobacteria_phage	99.0	1.7e-222
WP_021578635.1|3864684_3865335_-|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	99.1	3.6e-118
WP_145768672.1|3865312_3866554_-|portal	phage portal protein	portal	U5P411	Shigella_phage	99.0	1.0e-241
WP_000605606.1|3866553_3866736_-	hypothetical protein	NA	S5FXQ9	Shigella_phage	100.0	1.7e-25
WP_072011717.1|3866747_3868244_-|terminase	terminase large subunit	terminase	A0A1C9IIA1	Salmonella_phage	99.8	7.4e-300
WP_145768673.1|3868477_3868972_-|terminase	phage terminase small subunit P27 family	terminase	A0A1B3B2F4	Salmonella_phage	98.8	1.5e-87
WP_145768674.1|3869097_3869448_-	HNH endonuclease	NA	Q8SBD7	Shigella_phage	98.3	9.5e-65
WP_078279554.1|3869496_3869988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145768675.1|3870141_3870576_-	DUF2570 domain-containing protein	NA	Q8SBD9	Shigella_phage	87.7	2.7e-53
WP_145768676.1|3870559_3871036_-	glycoside hydrolase family protein	NA	Q8SBE0	Shigella_phage	96.2	3.0e-85
WP_023210472.1|3871039_3871381_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	92.8	2.8e-53
WP_145768677.1|3871512_3871755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145768678.1|3872043_3872796_-	antitermination protein	NA	Q8SBE4	Shigella_phage	98.0	2.9e-135
WP_032176009.1|3872809_3873799_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	99.4	1.2e-194
WP_001061445.1|3873806_3874616_-	KilA-N domain-containing protein	NA	A0A291AWU7	Escherichia_phage	99.6	4.0e-151
WP_000767133.1|3874635_3875025_-	RusA family crossover junction endodeoxyribonuclease	NA	A5LH74	Enterobacteria_phage	99.2	1.6e-68
WP_000210187.1|3875021_3875348_-	LexA family transcriptional regulator	NA	A5LH73	Enterobacteria_phage	100.0	1.6e-53
WP_042630965.1|3875344_3875998_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	99.1	4.3e-127
WP_024145951.1|3876092_3876461_-	hypothetical protein	NA	U5P0A0	Shigella_phage	98.4	5.1e-69
WP_001250270.1|3877041_3877254_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	5.4e-15
WP_001231956.1|3878033_3878231_-	hypothetical protein	NA	K7PHB1	Enterobacterial_phage	56.9	1.1e-14
WP_000981537.1|3878326_3878980_+	helix-turn-helix domain-containing protein	NA	K7PLZ5	Enterobacterial_phage	60.8	5.7e-71
WP_145768679.1|3879213_3879489_+	hypothetical protein	NA	Q8SBF7	Shigella_phage	96.7	2.0e-46
WP_145768680.1|3879406_3879652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000135682.1|3880089_3880452_+	hypothetical protein	NA	U5P4J6	Shigella_phage	100.0	3.3e-60
WP_000081287.1|3880517_3881342_+	DUF2303 family protein	NA	U5P439	Shigella_phage	100.0	6.0e-150
WP_000008200.1|3881469_3882006_+	5'-deoxynucleotidase	NA	U5P0T3	Shigella_phage	100.0	4.3e-101
WP_001242755.1|3881996_3882359_+	hypothetical protein	NA	U5P092	Shigella_phage	99.2	1.0e-66
WP_145768681.1|3882358_3882664_+	hypothetical protein	NA	U5P0J0	Shigella_phage	99.0	2.0e-50
WP_077873866.1|3882579_3883014_+	helix-turn-helix domain-containing protein	NA	U5P4J3	Shigella_phage	100.0	6.4e-79
WP_000051887.1|3882890_3884054_+|integrase	site-specific integrase	integrase	U5P434	Shigella_phage	100.0	2.4e-229
WP_097404215.1|3884375_3885503_+	hypothetical protein	NA	J9Q803	Salmonella_phage	32.2	4.9e-30
WP_145768682.1|3885594_3887094_+	SIR2 family protein	NA	A0A1S5SA14	Streptococcus_phage	29.0	4.9e-25
WP_000930135.1|3887637_3888162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000773312.1|3888261_3888534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047090275.1|3888899_3889187_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000164227.1|3889183_3889714_-	ProQ/FinO family protein	NA	Q2A0A1	Sodalis_phage	42.5	1.5e-08
WP_047090274.1|3890198_3892331_-	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	42.5	3.7e-127
WP_000728903.1|3892327_3892618_-	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_000528108.1|3892622_3892823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000609215.1|3892815_3893109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137527471.1|3893101_3893638_-	host cell division inhibitor Icd-like protein	NA	Q8SBF3	Shigella_phage	55.4	3.6e-15
WP_072025262.1|3893776_3893956_+	hypothetical protein	NA	A0A2H4JB52	uncultured_Caudovirales_phage	55.2	3.8e-09
WP_047090272.1|3894673_3895474_-	antA/AntB antirepressor family protein	NA	A0A0R6PJV6	Moraxella_phage	42.0	4.2e-23
WP_000072422.1|3895552_3895750_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_000227606.1|3895970_3896741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000772659.1|3896868_3898083_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	56.0	1.7e-132
3907542:3907557	attR	CCAGCAGTTGCAGATG	NA	NA	NA	NA
>prophage 12
NZ_CP042250	Escherichia coli strain BCE049 chromosome, complete genome	5084081	4635955	4679476	5084081	tRNA,integrase,lysis,portal,holin,terminase,protease,tail	Enterobacteria_phage(50.94%)	58	4628767:4628782	4654913:4654928
4628767:4628782	attL	ACAACGCGATCCCCGC	NA	NA	NA	NA
WP_072277880.1|4635955_4636993_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_000332271.1|4637081_4638179_+|integrase	site-specific integrase	integrase	S5MDN5	Escherichia_phage	99.7	9.5e-212
WP_001217539.1|4638240_4638489_+	DinI family protein	NA	A5LH55	Enterobacteria_phage	100.0	1.1e-38
WP_024186159.1|4638606_4638894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000235969.1|4638936_4639977_-|tail	tail fiber domain-containing protein	tail	A0A0E3M4A9	Enterobacteria_phage	65.8	6.6e-122
WP_000654146.1|4639986_4640268_-	hypothetical protein	NA	A0A1X7QHA1	Escherichia_phage	50.0	5.3e-18
WP_000741768.1|4640267_4642646_-|tail	phage tail protein	tail	A0A1X7QGG5	Escherichia_phage	69.7	1.8e-170
WP_001317546.1|4642710_4643310_-	Ail/Lom family outer membrane beta-barrel protein	NA	Q9EV15	Enterobacteria_phage	90.5	2.9e-98
WP_096488192.1|4643377_4646857_-	host specificity protein J	NA	A5LH43	Enterobacteria_phage	89.9	0.0e+00
WP_071779861.1|4646917_4647550_-|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	98.6	3.2e-95
WP_000140719.1|4647486_4648230_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	97.6	1.2e-149
WP_001152393.1|4648235_4648934_-|tail	phage minor tail protein L	tail	A5LH40	Enterobacteria_phage	98.7	9.5e-133
WP_000447253.1|4648943_4649273_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	100.0	1.7e-60
WP_023147899.1|4649272_4652329_-|tail	phage tail tape measure protein	tail	A5LH38	Enterobacteria_phage	97.6	0.0e+00
WP_001161009.1|4652300_4652630_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	100.0	7.6e-56
WP_096488195.1|4652638_4653025_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	99.2	1.2e-65
WP_000211128.1|4653085_4653829_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	98.0	1.6e-130
WP_001079411.1|4653839_4654241_-|tail	tail protein	tail	A5LH34	Enterobacteria_phage	98.5	2.4e-72
WP_000677120.1|4654237_4654828_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.1	7.2e-81
WP_001283153.1|4654839_4655115_-	DNA breaking-rejoining protein	NA	K7PH43	Enterobacteria_phage	100.0	2.3e-45
4654913:4654928	attR	ACAACGCGATCCCCGC	NA	NA	NA	NA
WP_001097050.1|4655107_4655431_-	DUF2190 family protein	NA	A0A291AWX2	Escherichia_phage	100.0	8.5e-52
WP_001360054.1|4655517_4657545_-|protease	Clp protease ClpP	protease	A5LH30	Enterobacteria_phage	99.7	0.0e+00
WP_001529531.1|4657489_4658998_-|portal	phage portal protein	portal	K7PJP3	Enterobacteria_phage	99.2	2.3e-288
WP_061336311.1|4658997_4659210_-	hypothetical protein	NA	A5LH28	Enterobacteria_phage	97.1	2.1e-30
WP_000934132.1|4659206_4661309_-|terminase	phage terminase large subunit family protein	terminase	A0A291AWY5	Escherichia_phage	99.7	0.0e+00
WP_000349509.1|4661308_4661800_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	87.2	1.3e-72
WP_024186199.1|4661789_4662068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001139681.1|4662474_4662627_-	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	96.0	4.7e-21
WP_001300226.1|4662614_4663082_-|lysis	lysis protein	lysis	K7PH77	Enterobacteria_phage	100.0	2.9e-77
WP_145768702.1|4663078_4663612_-	glycoside hydrolase family protein	NA	K7PLY1	Enterobacteria_phage	95.5	3.1e-99
WP_000193274.1|4663675_4664026_-	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	95.2	2.9e-37
WP_024186198.1|4664030_4664246_-|holin	holin	holin	M1FN85	Enterobacteria_phage	94.4	2.2e-32
WP_001318187.1|4664795_4665527_-	pertussis toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	74.4	5.2e-97
WP_000489186.1|4665562_4665970_-	hypothetical protein	NA	A0A0U2KD34	Escherichia_phage	63.2	1.1e-43
WP_001204822.1|4666283_4666655_-	antitermination protein Q	NA	Q777W5	Enterobacteria_phage	85.4	1.7e-59
WP_021038222.1|4666672_4667662_-	DUF968 domain-containing protein	NA	U5P0K4	Shigella_phage	98.5	8.9e-193
WP_001061438.1|4667669_4668479_-	KilA-N domain-containing protein	NA	A5LH75	Enterobacteria_phage	100.0	8.2e-152
WP_000767113.1|4668498_4668888_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0P0ZD39	Stx2-converting_phage	100.0	7.1e-69
WP_000210164.1|4668884_4669211_-	LexA family transcriptional regulator	NA	A0A0N7KZF7	Stx2-converting_phage	100.0	9.2e-54
WP_001318184.1|4669207_4669861_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	98.6	3.6e-126
WP_072178178.1|4669860_4670355_-	PerC family transcriptional regulator	NA	K7PJR0	Enterobacteria_phage	98.8	4.3e-87
WP_000128176.1|4670351_4670720_-	hypothetical protein	NA	U5P0A0	Shigella_phage	98.4	3.9e-69
WP_001250270.1|4671300_4671513_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	5.4e-15
WP_000515872.1|4671688_4672246_-	hypothetical protein	NA	S5FXP0	Shigella_phage	93.5	3.5e-93
WP_000187186.1|4672268_4672517_-	chaperone TorD	NA	NA	NA	NA	NA
WP_000853321.1|4672654_4673341_+	helix-turn-helix transcriptional regulator	NA	A0A0N7C1P9	Escherichia_phage	41.6	2.3e-38
WP_000917896.1|4673675_4673972_+	hypothetical protein	NA	Q8SBF7	Shigella_phage	100.0	1.2e-52
WP_000141752.1|4673889_4674135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000135680.1|4674572_4674935_+	hypothetical protein	NA	Q8SBF8	Shigella_phage	100.0	8.6e-61
WP_000081297.1|4675000_4675825_+	YfdQ family protein	NA	Q8SBF9	Shigella_phage	99.6	4.6e-150
WP_000008216.1|4675952_4676489_+	5'-deoxynucleotidase	NA	U5P0T3	Shigella_phage	99.4	9.7e-101
WP_001242737.1|4676479_4676830_+	hypothetical protein	NA	A0A0P0ZBF8	Stx2-converting_phage	96.6	4.3e-57
WP_000145690.1|4676826_4677312_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	76.5	1.7e-67
WP_001318178.1|4677308_4677827_+	ead/Ea22-like family protein	NA	A0A222YWM9	Escherichia_phage	64.7	7.1e-32
WP_001014286.1|4677828_4678017_+	hypothetical protein	NA	G9L660	Escherichia_phage	92.1	2.2e-23
WP_000208054.1|4678019_4678586_+	DUF551 domain-containing protein	NA	G9L6G3	Escherichia_phage	93.0	3.1e-97
WP_001061340.1|4678585_4679158_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	97.4	1.9e-107
WP_001093916.1|4679194_4679476_+	hypothetical protein	NA	K7PGU0	Enterobacteria_phage	96.8	2.8e-43
>prophage 1
NZ_CP042249	Escherichia coli strain BCE049 plasmid pBCE049-3, complete sequence	57435	15506	21612	57435		Escherichia_phage(33.33%)	14	NA	NA
WP_052974092.1|15506_15956_+	hypothetical protein	NA	A0A0A7NRY2	Enterobacteria_phage	80.4	8.9e-15
WP_000224735.1|15961_16165_+	hypothetical protein	NA	A0A222YWL3	Escherichia_phage	90.5	1.6e-24
WP_122986479.1|16338_16602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001401701.1|16678_16999_+	hypothetical protein	NA	A0A0N7KZV3	Escherichia_phage	90.3	2.3e-25
WP_000466318.1|17129_17567_-	hypothetical protein	NA	A0A0R6PJ17	Moraxella_phage	34.7	9.5e-14
WP_000833470.1|17591_17774_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_145768465.1|18071_18515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681608.1|18621_18888_-	type II toxin-antitoxin system HicB family antitoxin	NA	K7PJX6	Enterobacterial_phage	47.4	8.9e-15
WP_023225992.1|19307_19568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001132407.1|20163_20415_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_000702246.1|20404_20665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000814384.1|20716_20941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000866037.1|21038_21248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000427402.1|21288_21612_-	hypothetical protein	NA	A0A0F6WCW0	Sinorhizobium_phage	46.5	1.0e-12
