assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007833255.1_ASM783325v1	NZ_CP042246	Escherichia coli strain PU-1 chromosome, complete genome	1	2439302-2439425	1	CRISPRCasFinder	no	DEDDh	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA,NA|30aa|down_7|NZ_CP042246.1_2448322_2448412_+	NA|471aa|up_9|NZ_CP042246.1_2428755_2430168_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP042246.1_2430724_2430934_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP042246.1_2431389_2432016_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP042246.1_2432036_2434139_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP042246.1_2434142_2434790_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP042246.1_2434853_2435522_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP042246.1_2435518_2436304_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP042246.1_2436307_2437120_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP042246.1_2437131_2438736_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP042246.1_2438861_2439167_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP042246.1_2439740_2440997_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP042246.1_2441037_2442411_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP042246.1_2442625_2443267_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP042246.1_2443306_2444455_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP042246.1_2444745_2445957_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP042246.1_2446069_2447002_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP042246.1_2446998_2448024_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP042246.1_2448322_2448412_+	NA	NA|390aa|down_8|NZ_CP042246.1_2448577_2449747_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP042246.1_2449892_2450474_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_007833255.1_ASM783325v1	NZ_CP042246	Escherichia coli strain PU-1 chromosome, complete genome	2	3098004-3098095	2	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA|70aa|up_8|NZ_CP042246.1_3087361_3087571_-,NA	NA|503aa|up_9|NZ_CP042246.1_3085694_3087203_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|70aa|up_8|NZ_CP042246.1_3087361_3087571_-	NA	NA|1321aa|up_7|NZ_CP042246.1_3087625_3091588_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NZ_CP042246.1_3091627_3092266_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_5|NZ_CP042246.1_3092552_3093644_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_4|NZ_CP042246.1_3093643_3094336_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_3|NZ_CP042246.1_3094347_3094734_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_2|NZ_CP042246.1_3094741_3095542_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_1|NZ_CP042246.1_3095551_3096142_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_0|NZ_CP042246.1_3096152_3096647_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|199aa|down_0|NZ_CP042246.1_3098518_3099115_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP042246.1_3099135_3099363_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP042246.1_3099400_3100642_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP042246.1_3101176_3102097_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP042246.1_3102096_3102402_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP042246.1_3102757_3103357_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP042246.1_3103353_3105900_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP042246.1_3105899_3107072_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP042246.1_3107201_3107894_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP042246.1_3107866_3108895_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_007833255.1_ASM783325v1	NZ_CP042246	Escherichia coli strain PU-1 chromosome, complete genome	3	3219640-3220028	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas8f,cas3f,cas1	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	1	1	3219788-3219819	NZ_CP042245.1_149226-149195	I-F:I-F:I-F	6,6,5	6	TypeI-F	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA,NA	NA|431aa|up_9|NZ_CP042246.1_3204978_3206271_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP042246.1_3206361_3207705_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP042246.1_3207715_3208327_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1348aa|up_6|NZ_CP042246.1_3208485_3212529_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP042246.1_3212663_3213158_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP042246.1_3213701_3214667_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP042246.1_3214789_3216556_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP042246.1_3216556_3218278_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP042246.1_3218319_3219024_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP042246.1_3219308_3219527_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|down_0|NZ_CP042246.1_3220568_3221123_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_1|NZ_CP042246.1_3221133_3222135_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas8f|436aa|down_2|NZ_CP042246.1_3223065_3224373_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|down_3|NZ_CP042246.1_3224702_3227936_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|down_4|NZ_CP042246.1_3227932_3228916_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_5|NZ_CP042246.1_3229628_3231905_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_6|NZ_CP042246.1_3231935_3232256_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_7|NZ_CP042246.1_3232578_3232803_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_8|NZ_CP042246.1_3232875_3234822_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_9|NZ_CP042246.1_3234818_3235934_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional
GCF_007833255.1_ASM783325v1	NZ_CP042246	Escherichia coli strain PU-1 chromosome, complete genome	4	3229089-3229416	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas8f,cas3f,cas1	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	1	1	3229117-3229148	NZ_CP042245.1_27285-27316	I-F:I-F:I-F	5,5,4	5	TypeI-F	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA,NA	NA|322aa|up_9|NZ_CP042246.1_3213701_3214667_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_8|NZ_CP042246.1_3214789_3216556_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_7|NZ_CP042246.1_3216556_3218278_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_6|NZ_CP042246.1_3218319_3219024_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_5|NZ_CP042246.1_3219308_3219527_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|up_4|NZ_CP042246.1_3220568_3221123_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|up_3|NZ_CP042246.1_3221133_3222135_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas8f|436aa|up_2|NZ_CP042246.1_3223065_3224373_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|up_1|NZ_CP042246.1_3224702_3227936_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|up_0|NZ_CP042246.1_3227932_3228916_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_0|NZ_CP042246.1_3229628_3231905_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP042246.1_3231935_3232256_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP042246.1_3232578_3232803_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP042246.1_3232875_3234822_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP042246.1_3234818_3235934_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP042246.1_3236084_3237041_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP042246.1_3237037_3238696_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP042246.1_3239121_3239817_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP042246.1_3240137_3241037_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP042246.1_3241180_3242833_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_007833255.1_ASM783325v1	NZ_CP042246	Escherichia coli strain PU-1 chromosome, complete genome	5	3464099-3464229	5	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Orphan	TTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCT	36	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA|99aa|up_5|NZ_CP042246.1_3456129_3456426_-,NA|36aa|down_4|NZ_CP042246.1_3467857_3467965_+,NA|125aa|down_6|NZ_CP042246.1_3469601_3469976_+	NA|98aa|up_9|NZ_CP042246.1_3451881_3452175_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_8|NZ_CP042246.1_3452174_3452288_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_7|NZ_CP042246.1_3452302_3453442_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_6|NZ_CP042246.1_3453457_3455026_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|99aa|up_5|NZ_CP042246.1_3456129_3456426_-	NA	NA|372aa|up_4|NZ_CP042246.1_3456355_3457471_-	sd00006, TPR, Tetratricopeptide repeat	NA|290aa|up_3|NZ_CP042246.1_3457710_3458580_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_2|NZ_CP042246.1_3458579_3459746_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|406aa|up_1|NZ_CP042246.1_3459839_3461057_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|up_0|NZ_CP042246.1_3461071_3463873_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_0|NZ_CP042246.1_3464233_3464950_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_1|NZ_CP042246.1_3464965_3466732_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_2|NZ_CP042246.1_3466731_3467079_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|130aa|down_3|NZ_CP042246.1_3467072_3467462_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|36aa|down_4|NZ_CP042246.1_3467857_3467965_+	NA	NA|428aa|down_5|NZ_CP042246.1_3468170_3469454_+	PRK05614, gltA, citrate synthase	NA|125aa|down_6|NZ_CP042246.1_3469601_3469976_+	NA	NA|349aa|down_7|NZ_CP042246.1_3470127_3471174_+	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|264aa|down_8|NZ_CP042246.1_3471170_3471962_-	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|245aa|down_9|NZ_CP042246.1_3471997_3472732_-	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins
GCF_007833255.1_ASM783325v1	NZ_CP042246	Escherichia coli strain PU-1 chromosome, complete genome	6	4403748-4403887	6	CRISPRCasFinder	no		cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,DEDDh,DinG,cas6f,cas7f,cas8f,cas3f,cas1,RT	NA,NA	NA|340aa|up_9|NZ_CP042246.1_4391957_4392977_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP042246.1_4392980_4393544_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP042246.1_4393760_4394792_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP042246.1_4394815_4395580_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP042246.1_4395644_4396964_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP042246.1_4397030_4398029_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|510aa|up_3|NZ_CP042246.1_4398106_4399636_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP042246.1_4399770_4400853_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP042246.1_4400852_4401953_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP042246.1_4402219_4403731_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP042246.1_4403988_4404432_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP042246.1_4404431_4407287_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP042246.1_4407333_4408521_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP042246.1_4408713_4409217_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP042246.1_4409393_4409810_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP042246.1_4409971_4410976_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP042246.1_4411021_4411474_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP042246.1_4412151_4413372_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|315aa|down_8|NZ_CP042246.1_4413382_4414327_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP042246.1_4414337_4415342_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
