assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007833235.1_ASM783323v1	NZ_CP042242	Oxalobacter formigenes strain SSYG-15 chromosome, complete genome	1	760275-761142	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas7f,cas5f,cas8f,cas3f	cas3,RT,cas1,cas7f,cas5f,cas8f,cas3f,cas6f,cas5,DinG,csa3,DEDDh	Type I-F	CTTCTAAGCCACCTACACGGTGGTTCAC,CTTCTAAGCCACCTACACGGTGGTTCAC,CTTCTAAGCCACCTACACGGTGGTTCAC	28,28,28	0	0	NA	NA	NA:NA:NA	14,14,10	14	TypeI-F	cas3,RT,cas1,cas7f,cas5f,cas8f,cas3f,cas6f,cas5,DinG,csa3,DEDDh	NA,NA	NA|754aa|up_9|NZ_CP042242.1_747039_749301_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|244aa|up_8|NZ_CP042242.1_749880_750612_+	cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya	NA|525aa|up_7|NZ_CP042242.1_750660_752235_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|366aa|up_6|NZ_CP042242.1_752346_753444_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|356aa|up_5|NZ_CP042242.1_753760_754828_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|136aa|up_4|NZ_CP042242.1_755100_755508_-	COG5015, COG5015, Uncharacterized conserved protein [Function unknown]	NA|318aa|up_3|NZ_CP042242.1_755830_756784_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|346aa|up_2|NZ_CP042242.1_757108_758146_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|260aa|up_1|NZ_CP042242.1_758540_759320_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|200aa|up_0|NZ_CP042242.1_759493_760093_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	cas1|317aa|down_0|NZ_CP042242.1_761238_762189_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|186aa|down_1|NZ_CP042242.1_762185_762743_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|362aa|down_2|NZ_CP042242.1_762742_763828_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|272aa|down_3|NZ_CP042242.1_763852_764668_-	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|421aa|down_4|NZ_CP042242.1_764664_765927_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1006aa|down_5|NZ_CP042242.1_765964_768982_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	NA|729aa|down_6|NZ_CP042242.1_770480_772667_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|173aa|down_7|NZ_CP042242.1_772889_773408_-	PRK13963, PRK13963, rRNA maturation RNase YbeY	NA|395aa|down_8|NZ_CP042242.1_773404_774589_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|449aa|down_9|NZ_CP042242.1_774676_776023_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
GCF_007833235.1_ASM783323v1	NZ_CP042242	Oxalobacter formigenes strain SSYG-15 chromosome, complete genome	2	769549-770236	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas7f,cas5f,cas8f,cas3f	cas3,RT,cas1,cas7f,cas5f,cas8f,cas3f,cas6f,cas5,DinG,csa3,DEDDh	Type I-F	CTTCTAAACCACCTACACGGTGGATCAC,CTTCTAAACCACCTNCACGGTGGATCAC,CTTCTAAACCACCTACACGGTGGATCAC	28,28,28	1	1	770057-770088	NZ_CP042242.1_2158746-2158777	NA:NA:NA	11,11,9	11	TypeI-F	cas3,RT,cas1,cas7f,cas5f,cas8f,cas3f,cas6f,cas5,DinG,csa3,DEDDh	NA,NA	NA|318aa|up_9|NZ_CP042242.1_755830_756784_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|346aa|up_8|NZ_CP042242.1_757108_758146_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|260aa|up_7|NZ_CP042242.1_758540_759320_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|200aa|up_6|NZ_CP042242.1_759493_760093_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	cas1|317aa|up_5|NZ_CP042242.1_761238_762189_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|186aa|up_4|NZ_CP042242.1_762185_762743_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|362aa|up_3|NZ_CP042242.1_762742_763828_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|272aa|up_2|NZ_CP042242.1_763852_764668_-	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|421aa|up_1|NZ_CP042242.1_764664_765927_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3f|1006aa|up_0|NZ_CP042242.1_765964_768982_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	NA|729aa|down_0|NZ_CP042242.1_770480_772667_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|173aa|down_1|NZ_CP042242.1_772889_773408_-	PRK13963, PRK13963, rRNA maturation RNase YbeY	NA|395aa|down_2|NZ_CP042242.1_773404_774589_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|449aa|down_3|NZ_CP042242.1_774676_776023_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|114aa|down_4|NZ_CP042242.1_776111_776453_-	pfam05534, HicB, HicB family	NA|82aa|down_5|NZ_CP042242.1_776534_776780_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|345aa|down_6|NZ_CP042242.1_776988_778023_+	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS	NA|344aa|down_7|NZ_CP042242.1_778135_779167_+	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|287aa|down_8|NZ_CP042242.1_779168_780029_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|268aa|down_9|NZ_CP042242.1_780126_780930_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB
GCF_007833235.1_ASM783323v1	NZ_CP042242	Oxalobacter formigenes strain SSYG-15 chromosome, complete genome	3	827689-828437	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,RT,cas1,cas7f,cas5f,cas8f,cas3f,cas6f,cas5,DinG,csa3,DEDDh	Orphan	CTTCTAAGCCACCTACACGGTGGATCAC,CTTCTAAGCCACCTACACGGTGGATCACA,CTTCTAAGCCACCTACACGGTGGATCAC	28,29,28	0	0	NA	NA	NA:NA:NA	12,11,11	12	Orphan	cas3,RT,cas1,cas7f,cas5f,cas8f,cas3f,cas6f,cas5,DinG,csa3,DEDDh	NA,NA|130aa|down_1|NZ_CP042242.1_830364_830754_-,NA|79aa|down_2|NZ_CP042242.1_831215_831452_+,NA|112aa|down_3|NZ_CP042242.1_831606_831942_+,NA|81aa|down_6|NZ_CP042242.1_832898_833141_+,NA|270aa|down_9|NZ_CP042242.1_834316_835126_+	NA|232aa|up_9|NZ_CP042242.1_811169_811865_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|105aa|up_8|NZ_CP042242.1_813233_813548_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|326aa|up_7|NZ_CP042242.1_813674_814652_-	cd19084, AKR_AKR11B1-like, AKR11B1/AKR11B2 subfamily of aldo-keto reductase (AKR)	NA|328aa|up_6|NZ_CP042242.1_814883_815867_-	cd19084, AKR_AKR11B1-like, AKR11B1/AKR11B2 subfamily of aldo-keto reductase (AKR)	NA|596aa|up_5|NZ_CP042242.1_815943_817731_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|274aa|up_4|NZ_CP042242.1_817727_818549_-	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2	NA|201aa|up_3|NZ_CP042242.1_818821_819424_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|1374aa|up_2|NZ_CP042242.1_819918_824040_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|396aa|up_1|NZ_CP042242.1_824153_825341_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|391aa|up_0|NZ_CP042242.1_825502_826675_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|371aa|down_0|NZ_CP042242.1_828668_829781_-	cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily	NA|130aa|down_1|NZ_CP042242.1_830364_830754_-	NA	NA|79aa|down_2|NZ_CP042242.1_831215_831452_+	NA	NA|112aa|down_3|NZ_CP042242.1_831606_831942_+	NA	NA|66aa|down_4|NZ_CP042242.1_832239_832437_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|70aa|down_5|NZ_CP042242.1_832438_832648_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|81aa|down_6|NZ_CP042242.1_832898_833141_+	NA	NA|172aa|down_7|NZ_CP042242.1_833133_833649_+	pfam11655, DUF2589, Protein of unknown function (DUF2589)	NA|190aa|down_8|NZ_CP042242.1_833664_834234_+	pfam11655, DUF2589, Protein of unknown function (DUF2589)	NA|270aa|down_9|NZ_CP042242.1_834316_835126_+	NA
GCF_007833235.1_ASM783323v1	NZ_CP042242	Oxalobacter formigenes strain SSYG-15 chromosome, complete genome	4	909583-912012	4,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas5,cas7f,cas3f,cas1	cas3,RT,cas1,cas7f,cas5f,cas8f,cas3f,cas6f,cas5,DinG,csa3,DEDDh	Unclear	CTTCTAAGCTGCCTATACGGCAGTGAAC,CTTCTAAGCTGCCTATACGGCAGTGAAC,CTTCTAAGCTGCCTATACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	40,40,39	40	Unclear	cas3,RT,cas1,cas7f,cas5f,cas8f,cas3f,cas6f,cas5,DinG,csa3,DEDDh	NA|83aa|up_4|NZ_CP042242.1_903502_903751_-,cas5|343aa|down_1|NZ_CP042242.1_912732_913761_-,cas7f|325aa|down_2|NZ_CP042242.1_913773_914748_-,NA|119aa|down_5|NZ_CP042242.1_919146_919503_+,NA|504aa|down_8|NZ_CP042242.1_922107_923619_-,NA|106aa|down_9|NZ_CP042242.1_923895_924213_+	NA|877aa|up_9|NZ_CP042242.1_894747_897378_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|418aa|up_8|NZ_CP042242.1_897503_898757_-	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA|405aa|up_7|NZ_CP042242.1_898774_899989_-	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional	NA|537aa|up_6|NZ_CP042242.1_900203_901814_-	PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FlhA	NA|430aa|up_5|NZ_CP042242.1_902118_903408_-	TIGR04259, oxalate:formate_antiport_protein, oxalate/formate antiporter	NA|83aa|up_4|NZ_CP042242.1_903502_903751_-	NA	NA|363aa|up_3|NZ_CP042242.1_904507_905596_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|175aa|up_2|NZ_CP042242.1_905874_906399_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|864aa|up_1|NZ_CP042242.1_906407_908999_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|149aa|up_0|NZ_CP042242.1_909129_909576_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	cas6f|198aa|down_0|NZ_CP042242.1_912142_912736_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas5|343aa|down_1|NZ_CP042242.1_912732_913761_-	NA	cas7f|325aa|down_2|NZ_CP042242.1_913773_914748_-	NA	cas3f|985aa|down_3|NZ_CP042242.1_914751_917706_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|322aa|down_4|NZ_CP042242.1_917702_918668_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|119aa|down_5|NZ_CP042242.1_919146_919503_+	NA	NA|295aa|down_6|NZ_CP042242.1_919746_920631_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|303aa|down_7|NZ_CP042242.1_921151_922060_-	sd00010, SLR, Sel1-like repeat	NA|504aa|down_8|NZ_CP042242.1_922107_923619_-	NA	NA|106aa|down_9|NZ_CP042242.1_923895_924213_+	NA
