assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007814625.1_ASM781462v1	NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	1	200132-200232	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	GGAAATCAACAAGTTACAGATGGTTT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|184aa|up_9|NZ_CP031275.1_186403_186955_+	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|367aa|up_8|NZ_CP031275.1_187099_188200_+	TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915	NA|369aa|up_7|NZ_CP031275.1_188177_189284_+	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme	NA|250aa|up_6|NZ_CP031275.1_189283_190033_+	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917	NA|339aa|up_5|NZ_CP031275.1_190025_191042_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|242aa|up_4|NZ_CP031275.1_191049_191775_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|445aa|up_3|NZ_CP031275.1_191824_193159_+	pfam02447, GntP_permease, GntP family permease	NA|497aa|up_2|NZ_CP031275.1_194759_196250_-	TIGR01312, Xylulose_kinase, D-xylulose kinase	NA|441aa|up_1|NZ_CP031275.1_196255_197578_-	TIGR02630, Xylose_isomerase, xylose isomerase	NA|384aa|up_0|NZ_CP031275.1_197788_198940_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|151aa|down_0|NZ_CP031275.1_201002_201455_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|189aa|down_1|NZ_CP031275.1_201760_202327_+	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|274aa|down_2|NZ_CP031275.1_202419_203241_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|308aa|down_3|NZ_CP031275.1_204133_205057_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|496aa|down_4|NZ_CP031275.1_205158_206646_+	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|195aa|down_5|NZ_CP031275.1_206974_207559_+	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	NA|367aa|down_6|NZ_CP031275.1_207551_208652_+	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|67aa|down_7|NZ_CP031275.1_208652_208853_+	PRK11840, PRK11840, bifunctional sulfur carrier protein/thiazole synthase protein; Provisional	NA|256aa|down_8|NZ_CP031275.1_208854_209622_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|334aa|down_9|NZ_CP031275.1_209618_210620_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
GCF_007814625.1_ASM781462v1	NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	2	1125700-1125778	2	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	GTTCTTGTGATTCAACAGGTGCTTG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|168aa|up_4|NZ_CP031275.1_1117981_1118485_-,NA|60aa|down_2|NZ_CP031275.1_1127631_1127811_-,NA|173aa|down_4|NZ_CP031275.1_1129475_1129994_+,NA|60aa|down_5|NZ_CP031275.1_1130109_1130289_-,NA|64aa|down_6|NZ_CP031275.1_1130410_1130602_+	NA|188aa|up_9|NZ_CP031275.1_1114137_1114701_-	pfam11667, DUF3267, Putative zincin peptidase	NA|124aa|up_8|NZ_CP031275.1_1114940_1115312_-	COG4980, GvpP, Gas vesicle protein [General function prediction only]	NA|142aa|up_7|NZ_CP031275.1_1115391_1115817_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|246aa|up_6|NZ_CP031275.1_1115945_1116683_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|408aa|up_5|NZ_CP031275.1_1116679_1117903_+	pfam05975, EcsB, Bacterial ABC transporter protein EcsB	NA|168aa|up_4|NZ_CP031275.1_1117981_1118485_-	NA	NA|345aa|up_3|NZ_CP031275.1_1118748_1119783_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|308aa|up_2|NZ_CP031275.1_1119868_1120792_+	PRK12435, PRK12435, ferrochelatase; Provisional	NA|465aa|up_1|NZ_CP031275.1_1120809_1122204_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|186aa|up_0|NZ_CP031275.1_1122369_1122927_+	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]	NA|217aa|down_0|NZ_CP031275.1_1126083_1126734_-	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|155aa|down_1|NZ_CP031275.1_1126822_1127287_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|60aa|down_2|NZ_CP031275.1_1127631_1127811_-	NA	NA|258aa|down_3|NZ_CP031275.1_1128096_1128870_+	TIGR02415, Diacetyl_reductase, acetoin reductases	NA|173aa|down_4|NZ_CP031275.1_1129475_1129994_+	NA	NA|60aa|down_5|NZ_CP031275.1_1130109_1130289_-	NA	NA|64aa|down_6|NZ_CP031275.1_1130410_1130602_+	NA	NA|224aa|down_7|NZ_CP031275.1_1131670_1132342_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|188aa|down_8|NZ_CP031275.1_1133779_1134343_-	COG3212, COG3212, Predicted membrane protein [Function unknown]	NA|460aa|down_9|NZ_CP031275.1_1134610_1135990_+	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)
GCF_007814625.1_ASM781462v1	NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	3	1159326-1159407	3	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	ATATTTAATTTGTGAAATAAATCACA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|75aa|up_9|NZ_CP031275.1_1148793_1149018_+,NA	NA|75aa|up_9|NZ_CP031275.1_1148793_1149018_+	NA	NA|285aa|up_8|NZ_CP031275.1_1149182_1150037_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|309aa|up_7|NZ_CP031275.1_1150460_1151387_-	cd13608, PBP2_OpuCC_like, Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold	NA|488aa|up_6|NZ_CP031275.1_1151557_1153021_+	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	NA|348aa|up_5|NZ_CP031275.1_1153584_1154628_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|211aa|up_4|NZ_CP031275.1_1154634_1155267_+	PRK09289, PRK09289, riboflavin synthase	NA|394aa|up_3|NZ_CP031275.1_1155277_1156459_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|153aa|up_2|NZ_CP031275.1_1156472_1156931_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|334aa|up_1|NZ_CP031275.1_1157128_1158130_-	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|275aa|up_0|NZ_CP031275.1_1158396_1159221_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|319aa|down_0|NZ_CP031275.1_1159439_1160396_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|134aa|down_1|NZ_CP031275.1_1160546_1160948_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|187aa|down_2|NZ_CP031275.1_1161044_1161605_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|down_3|NZ_CP031275.1_1161601_1162555_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|390aa|down_4|NZ_CP031275.1_1162664_1163834_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|805aa|down_5|NZ_CP031275.1_1164352_1166767_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|down_6|NZ_CP031275.1_1166786_1167098_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|425aa|down_7|NZ_CP031275.1_1167445_1168720_-	pfam03486, HI0933_like, HI0933-like protein	NA|546aa|down_8|NZ_CP031275.1_1168849_1170487_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|233aa|down_9|NZ_CP031275.1_1170483_1171182_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
GCF_007814625.1_ASM781462v1	NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	4	1937969-1938047	4	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	CAAGCACCTATTGAATCACAAGAAC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|164aa|up_9|NZ_CP031275.1_1928381_1928873_-,NA|65aa|up_7|NZ_CP031275.1_1931995_1932190_-,NA|64aa|up_5|NZ_CP031275.1_1933526_1933718_-,NA|175aa|up_4|NZ_CP031275.1_1933810_1934335_-,NA|287aa|up_2|NZ_CP031275.1_1935034_1935895_-,NA|201aa|down_5|NZ_CP031275.1_1942563_1943166_+	NA|164aa|up_9|NZ_CP031275.1_1928381_1928873_-	NA	NA|403aa|up_8|NZ_CP031275.1_1930214_1931423_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|65aa|up_7|NZ_CP031275.1_1931995_1932190_-	NA	NA|104aa|up_6|NZ_CP031275.1_1932455_1932767_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|64aa|up_5|NZ_CP031275.1_1933526_1933718_-	NA	NA|175aa|up_4|NZ_CP031275.1_1933810_1934335_-	NA	NA|144aa|up_3|NZ_CP031275.1_1934465_1934897_-	PRK02944, PRK02944, YidC family membrane integrase SpoIIIJ	NA|287aa|up_2|NZ_CP031275.1_1935034_1935895_-	NA	NA|445aa|up_1|NZ_CP031275.1_1935970_1937305_-	smart00644, Ami_2, Ami_2 domain	NA|120aa|up_0|NZ_CP031275.1_1937303_1937663_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|346aa|down_0|NZ_CP031275.1_1938521_1939559_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|188aa|down_1|NZ_CP031275.1_1940051_1940615_-	COG4903, ComK, Genetic competence transcription factor [Transcription]	NA|73aa|down_2|NZ_CP031275.1_1940868_1941087_+	smart00914, IDEAL, A short protein domain of unknown function	NA|329aa|down_3|NZ_CP031275.1_1941186_1942173_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|62aa|down_4|NZ_CP031275.1_1942372_1942558_+	COG4873, COG4873, Uncharacterized protein conserved in bacteria [Function unknown]	NA|201aa|down_5|NZ_CP031275.1_1942563_1943166_+	NA	NA|503aa|down_6|NZ_CP031275.1_1943232_1944741_-	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|453aa|down_7|NZ_CP031275.1_1945103_1946462_-	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|596aa|down_8|NZ_CP031275.1_1946480_1948268_-	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|266aa|down_9|NZ_CP031275.1_1948520_1949318_-	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family
GCF_007814625.1_ASM781462v1	NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	5	1944924-1945012	5	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	GTAAGAGTCACTAACTCAATTTATTG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|177aa|up_7|NZ_CP031275.1_1937716_1938247_+,NA|201aa|up_1|NZ_CP031275.1_1942563_1943166_+,NA	NA|445aa|up_9|NZ_CP031275.1_1935970_1937305_-	smart00644, Ami_2, Ami_2 domain	NA|120aa|up_8|NZ_CP031275.1_1937303_1937663_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|177aa|up_7|NZ_CP031275.1_1937716_1938247_+	NA	NA|346aa|up_6|NZ_CP031275.1_1938521_1939559_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|188aa|up_5|NZ_CP031275.1_1940051_1940615_-	COG4903, ComK, Genetic competence transcription factor [Transcription]	NA|73aa|up_4|NZ_CP031275.1_1940868_1941087_+	smart00914, IDEAL, A short protein domain of unknown function	NA|329aa|up_3|NZ_CP031275.1_1941186_1942173_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|62aa|up_2|NZ_CP031275.1_1942372_1942558_+	COG4873, COG4873, Uncharacterized protein conserved in bacteria [Function unknown]	NA|201aa|up_1|NZ_CP031275.1_1942563_1943166_+	NA	NA|503aa|up_0|NZ_CP031275.1_1943232_1944741_-	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|453aa|down_0|NZ_CP031275.1_1945103_1946462_-	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|596aa|down_1|NZ_CP031275.1_1946480_1948268_-	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|266aa|down_2|NZ_CP031275.1_1948520_1949318_-	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family	NA|521aa|down_3|NZ_CP031275.1_1949681_1951244_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|80aa|down_4|NZ_CP031275.1_1951256_1951496_-	pfam14166, YueH, YueH-like protein	NA|495aa|down_5|NZ_CP031275.1_1951485_1952970_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|392aa|down_6|NZ_CP031275.1_1953411_1954587_+	PRK13608, PRK13608, diacylglycerol glucosyltransferase; Provisional	NA|396aa|down_7|NZ_CP031275.1_1954564_1955752_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|170aa|down_8|NZ_CP031275.1_1956147_1956657_-	PRK13679, PRK13679, hypothetical protein; Provisional	NA|249aa|down_9|NZ_CP031275.1_1956742_1957489_-	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
