The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	2797465	1134610	1168720	2797465	tRNA	Staphylococcus_phage(96.15%)	35	NA	NA
WP_047172197.1|1134610_1135990_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	60.7	8.4e-165
WP_107542517.1|1136009_1137014_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	48.8	1.7e-90
WP_047172199.1|1137007_1137247_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	82.7	2.7e-31
WP_047172200.1|1137313_1137790_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	53.8	3.1e-42
WP_107542546.1|1137797_1138547_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.4	1.2e-101
WP_069795696.1|1138611_1140201_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.6	2.9e-262
WP_029376983.1|1140590_1141787_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.4	6.8e-195
WP_029376984.1|1141880_1142789_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	78.9	7.4e-93
WP_047172202.1|1143003_1143840_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	69.3	1.7e-112
WP_069795694.1|1143980_1144334_-	CrcB family protein	NA	NA	NA	NA	NA
WP_042362468.1|1144330_1144696_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	61.5	1.9e-36
WP_047172204.1|1144926_1145232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029376989.1|1145521_1146235_+	transaldolase	NA	E3SKN5	Synechococcus_phage	35.3	5.0e-20
WP_069794529.1|1146443_1147079_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_047172206.1|1147215_1147665_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	46.1	3.7e-21
WP_042362472.1|1147673_1148096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047172207.1|1148108_1148576_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	44.2	2.0e-25
WP_017722196.1|1148793_1149018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047172208.1|1149182_1150037_+	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	44.1	4.0e-40
WP_107542519.1|1150460_1151387_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_042362476.1|1151557_1153021_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	61.8	4.6e-12
WP_069794527.1|1153584_1154628_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	1.1e-129
WP_042362478.1|1154634_1155267_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	63.8	2.9e-72
WP_069794525.1|1155277_1156459_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	9.7e-170
WP_039067036.1|1156472_1156931_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	76.3	1.7e-58
WP_107542520.1|1157128_1158130_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	65.2	2.0e-123
WP_107542521.1|1158396_1159221_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_047172213.1|1159439_1160396_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_029377004.1|1160546_1160948_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_047172214.1|1161044_1161605_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	61.1	1.7e-60
WP_047172215.1|1161601_1162555_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	85.4	3.9e-68
WP_047172216.1|1162664_1163834_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	78.2	2.1e-169
WP_047172217.1|1164352_1166767_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.2	0.0e+00
WP_029377008.1|1166786_1167098_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	69.9	2.2e-36
WP_042362488.1|1167445_1168720_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	77.2	2.5e-38
>prophage 2
NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	2797465	1291490	1300689	2797465	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_029377110.1|1291490_1292495_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	30.8	3.4e-06
WP_042362562.1|1292497_1293523_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_029377112.1|1293543_1294683_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	4.2e-85
WP_017724668.1|1294700_1294961_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	9.7e-06
WP_069795642.1|1295368_1297645_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.2	1.5e-30
WP_042362565.1|1297878_1300158_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.3	1.6e-72
WP_029377115.1|1300170_1300689_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.9	3.9e-30
>prophage 3
NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	2797465	1430004	1442366	2797465		uncultured_Mediterranean_phage(25.0%)	14	NA	NA
WP_047172340.1|1430004_1430919_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	30.9	6.9e-06
WP_107542768.1|1431078_1431621_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_029377233.1|1431724_1432171_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_029377234.1|1432213_1433101_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.1	1.9e-37
WP_107542767.1|1433176_1433683_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_042362651.1|1433775_1434510_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	4.7e-05
WP_101104620.1|1434499_1435042_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	32.1	1.2e-10
WP_042362653.1|1435034_1435772_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_042362654.1|1435901_1436624_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.9	3.2e-46
WP_107542770.1|1436607_1438386_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	24.9	2.7e-22
WP_107542766.1|1438852_1439398_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_026113585.1|1439672_1439921_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
WP_107542765.1|1440031_1440997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042362656.1|1440983_1442366_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	33.7	3.6e-59
>prophage 4
NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	2797465	1889233	1897709	2797465		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_029379090.1|1889233_1889800_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.8	1.4e-28
WP_107542907.1|1889802_1890831_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.6	8.7e-66
WP_029379092.1|1890823_1892311_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.2	2.9e-46
WP_107542906.1|1892289_1894479_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	37.9	1.2e-133
WP_029379094.1|1894471_1895143_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_017724119.1|1895142_1895403_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_107542905.1|1895405_1896107_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.6	3.4e-45
WP_107542904.1|1896106_1897240_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_107542903.1|1897226_1897709_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.0	4.9e-19
>prophage 5
NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	2797465	1932455	1939559	2797465	integrase	Staphylococcus_phage(66.67%)	9	1929907:1929930	1939725:1939748
1929907:1929930	attL	TAATTTACGGAAACGGAGGGATTC	NA	NA	NA	NA
WP_107543254.1|1932455_1932767_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JPZ8	Staphylococcus_phage	95.2	1.9e-48
WP_107543217.1|1933526_1933718_-	hypothetical protein	NA	A0A2H4JGI3	uncultured_Caudovirales_phage	92.1	1.3e-28
WP_107543218.1|1933810_1934335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107543219.1|1934465_1934897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107543220.1|1935034_1935895_-	hypothetical protein	NA	A0A0U1WFE9	Staphylococcus_phage	41.5	1.1e-37
WP_107543221.1|1935970_1937305_-	CHAP domain-containing protein	NA	A0A2H4J2Z6	uncultured_Caudovirales_phage	39.7	3.8e-69
WP_145511737.1|1937303_1937663_+	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
WP_107543046.1|1937716_1938247_+	hypothetical protein	NA	A0A1J0MFV9	Staphylococcus_phage	69.2	6.3e-12
WP_107543047.1|1938521_1939559_+|integrase	site-specific integrase	integrase	U3PJ31	Staphylococcus_phage	76.8	1.6e-155
1939725:1939748	attR	TAATTTACGGAAACGGAGGGATTC	NA	NA	NA	NA
>prophage 6
NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	2797465	2099685	2115880	2797465	integrase,coat	Staphylococcus_phage(30.0%)	20	2103595:2103610	2119995:2120010
WP_107543005.1|2099685_2100156_-|coat	spore coat protein	coat	A0A2H4JB26	uncultured_Caudovirales_phage	51.7	1.1e-36
WP_107543006.1|2100215_2100824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107543007.1|2100835_2101072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107543008.1|2101399_2101591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107543009.1|2101779_2102247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107543010.1|2102691_2104410_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	43.4	3.5e-128
2103595:2103610	attL	TTCAACACTTACATTT	NA	NA	NA	NA
WP_107543011.1|2104423_2105311_-	mobile element-associated protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	47.2	2.4e-72
WP_107543012.1|2105412_2105721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107543024.1|2105958_2106141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107543013.1|2106178_2106397_-	helix-turn-helix transcriptional regulator	NA	A0A141E0Q1	Streptococcus_phage	44.6	5.2e-05
WP_107543014.1|2106393_2106624_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_107543015.1|2106748_2107276_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JPB6	Staphylococcus_phage	53.1	3.9e-46
WP_107543016.1|2107286_2108393_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.9	2.6e-76
WP_107543017.1|2108424_2108724_-	TM2 domain-containing protein	NA	A0A127AZ85	Bacillus_phage	42.3	3.2e-13
WP_029377645.1|2109423_2109888_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	93.5	5.5e-76
WP_107543018.1|2109910_2112298_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.9	6.9e-90
WP_107543019.1|2112335_2113076_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_017722473.1|2113209_2113443_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_029377648.1|2113511_2113973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029377649.1|2114575_2115880_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	78.7	3.8e-191
2119995:2120010	attR	TTCAACACTTACATTT	NA	NA	NA	NA
>prophage 7
NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	2797465	2164721	2180682	2797465		uncultured_Caudovirales_phage(41.67%)	13	NA	NA
WP_047172717.1|2164721_2165522_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	28.9	1.7e-13
WP_029377692.1|2165518_2166478_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	54.0	8.0e-05
WP_029377693.1|2166467_2167436_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.2	9.8e-136
WP_042363105.1|2167816_2168785_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.2	2.6e-173
WP_047172719.1|2168901_2171007_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	89.7	0.0e+00
WP_017722526.1|2170969_2171368_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	74.2	1.0e-51
WP_107542957.1|2172092_2172974_+	DMT family transporter	NA	NA	NA	NA	NA
WP_029377697.1|2172995_2173496_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	4.5e-52
WP_107542958.1|2173679_2175194_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.6	1.7e-70
WP_042363110.1|2175851_2177360_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.4	4.1e-72
WP_080706872.1|2177711_2178662_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	24.5	1.5e-11
WP_017722532.1|2178829_2179378_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	1.0e-28
WP_107542959.1|2179626_2180682_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.4	1.1e-20
>prophage 8
NZ_CP031275	Staphylococcus xylosus strain 2 chromosome, complete genome	2797465	2193952	2201342	2797465		Pandoravirus(33.33%)	9	NA	NA
WP_107542960.1|2193952_2195095_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	39.1	2.7e-23
WP_069793934.1|2195078_2195672_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0B5J984	Pandoravirus	32.6	4.6e-27
WP_029377712.1|2195927_2196599_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	9.1e-64
WP_042363122.1|2196601_2197030_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_107542961.1|2197022_2197739_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.6	2.2e-52
WP_042363123.1|2197975_2198569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042363124.1|2198632_2198887_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_069796239.1|2199071_2200133_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.1	4.2e-63
WP_107537878.1|2200502_2201342_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.6	8.7e-56
