assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007814115.1_ASM781411v1	NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	1	194354-195015	1	CRT	no		RT,csa3,WYL,DEDDh,cas3,DinG	Orphan	AGTGAGTCNTTAAGNGANAG	20	1	1	194962-194995	NZ_CP031196.1_190408-190441	NA	8	8	Orphan	RT,csa3,WYL,DEDDh,cas3,DinG	NA|74aa|up_6|NZ_CP031196.1_182658_182880_-,NA|167aa|up_3|NZ_CP031196.1_183972_184473_+,NA|251aa|down_0|NZ_CP031196.1_195429_196182_-	NA|39aa|up_9|NZ_CP031196.1_180263_180380_+	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|264aa|up_8|NZ_CP031196.1_180582_181374_+	cd09999, Arginase-like_1, Arginase-like amidino hydrolase family	NA|317aa|up_7|NZ_CP031196.1_181420_182371_-	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|74aa|up_6|NZ_CP031196.1_182658_182880_-	NA	NA|157aa|up_5|NZ_CP031196.1_183026_183497_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|44aa|up_4|NZ_CP031196.1_183566_183698_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|167aa|up_3|NZ_CP031196.1_183972_184473_+	NA	NA|189aa|up_2|NZ_CP031196.1_184539_185106_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|243aa|up_1|NZ_CP031196.1_185245_185974_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|365aa|up_0|NZ_CP031196.1_185970_187065_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|251aa|down_0|NZ_CP031196.1_195429_196182_-	NA	NA|478aa|down_1|NZ_CP031196.1_197468_198902_+	TIGR03061, hypothetical_protein_lp_1332, YhgE/Pip N-terminal domain	NA|151aa|down_2|NZ_CP031196.1_198924_199377_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|209aa|down_3|NZ_CP031196.1_199650_200277_+	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|308aa|down_4|NZ_CP031196.1_201003_201927_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|106aa|down_5|NZ_CP031196.1_202048_202366_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|617aa|down_6|NZ_CP031196.1_202566_204417_+	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|179aa|down_7|NZ_CP031196.1_204413_204950_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|332aa|down_8|NZ_CP031196.1_205092_206088_+	cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins	NA|309aa|down_9|NZ_CP031196.1_206375_207302_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins
GCF_007814115.1_ASM781411v1	NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	2	322430-322540	1	CRISPRCasFinder	no	WYL	RT,csa3,WYL,DEDDh,cas3,DinG	Unclear	TCGTAACATTAATTACCAAGTGAAATTAAGGAATACAAAA	40	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,DEDDh,cas3,DinG	NA|60aa|up_7|NZ_CP031196.1_315964_316144_-,NA|69aa|down_6|NZ_CP031196.1_328997_329204_+	NA|140aa|up_9|NZ_CP031196.1_314556_314976_-	cd02219, cupin_YjlB-like, Bacillus subtilis YjlB and related proteins, cupin domain	NA|270aa|up_8|NZ_CP031196.1_315085_315895_-	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|60aa|up_7|NZ_CP031196.1_315964_316144_-	NA	NA|75aa|up_6|NZ_CP031196.1_316255_316480_-	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|192aa|up_5|NZ_CP031196.1_316627_317203_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|259aa|up_4|NZ_CP031196.1_317221_317998_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|306aa|up_3|NZ_CP031196.1_318092_319010_-	PRK12921, PRK12921, oxidoreductase	NA|252aa|up_2|NZ_CP031196.1_319223_319979_+	pfam02517, Abi, CAAX protease self-immunity	NA|273aa|up_1|NZ_CP031196.1_320320_321139_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|311aa|up_0|NZ_CP031196.1_321182_322115_+	cd05290, LDH_3, A subgroup of L-lactate dehydrogenases	NA|430aa|down_0|NZ_CP031196.1_322581_323871_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|302aa|down_1|NZ_CP031196.1_324088_324994_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|383aa|down_2|NZ_CP031196.1_324990_326139_+	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|417aa|down_3|NZ_CP031196.1_326233_327484_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|185aa|down_4|NZ_CP031196.1_327621_328176_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|157aa|down_5|NZ_CP031196.1_328349_328820_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|69aa|down_6|NZ_CP031196.1_328997_329204_+	NA	NA|281aa|down_7|NZ_CP031196.1_329291_330134_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|205aa|down_8|NZ_CP031196.1_330134_330749_-	cd05540, UreG, urease accessory protein UreG	NA|230aa|down_9|NZ_CP031196.1_330762_331452_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_007814115.1_ASM781411v1	NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	3	1588319-1588410	2	CRISPRCasFinder	no		RT,csa3,WYL,DEDDh,cas3,DinG	Orphan	ACCACTATCTCAATAAATTGAGAAGT	26	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,WYL,DEDDh,cas3,DinG	NA,NA|72aa|down_7|NZ_CP031196.1_1594625_1594841_+	NA|558aa|up_9|NZ_CP031196.1_1574138_1575812_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|501aa|up_8|NZ_CP031196.1_1575958_1577461_-	PRK00047, glpK, glycerol kinase GlpK	NA|273aa|up_7|NZ_CP031196.1_1577638_1578457_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|345aa|up_6|NZ_CP031196.1_1578628_1579663_-	cd07062, Peptidase_S66_mccF_like, Microcin C7 self-immunity protein determines resistance to exogenous microcin C7	NA|178aa|up_5|NZ_CP031196.1_1579867_1580401_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|656aa|up_4|NZ_CP031196.1_1580412_1582380_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|888aa|up_3|NZ_CP031196.1_1582392_1585056_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|163aa|up_2|NZ_CP031196.1_1585524_1586013_-	TIGR02359, conserved_hypothetical_protein, energy coupling factor transporter S component ThiW	NA|117aa|up_1|NZ_CP031196.1_1586052_1586403_-	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|514aa|up_0|NZ_CP031196.1_1586402_1587944_-	PRK14327, PRK14327, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|99aa|down_0|NZ_CP031196.1_1588475_1588772_-	COG0011, COG0011, Uncharacterized conserved protein [Function unknown]	NA|128aa|down_1|NZ_CP031196.1_1588988_1589372_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|207aa|down_2|NZ_CP031196.1_1589443_1590064_-	pfam05908, Gamma_PGA_hydro, Poly-gamma-glutamate hydrolase	NA|209aa|down_3|NZ_CP031196.1_1590144_1590771_-	pfam05908, Gamma_PGA_hydro, Poly-gamma-glutamate hydrolase	NA|289aa|down_4|NZ_CP031196.1_1590931_1591798_-	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	NA|587aa|down_5|NZ_CP031196.1_1591798_1593559_-	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|263aa|down_6|NZ_CP031196.1_1593674_1594463_-	pfam13277, YmdB, YmdB-like protein	NA|72aa|down_7|NZ_CP031196.1_1594625_1594841_+	NA	NA|520aa|down_8|NZ_CP031196.1_1595122_1596682_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|350aa|down_9|NZ_CP031196.1_1597058_1598108_-	PRK09354, recA, recombinase A; Provisional
