The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	2605152	1012998	1120122	2605152	tRNA,terminase,holin,protease,capsid,integrase,head,portal,tail	Staphylococcus_phage(57.97%)	113	1035001:1035018	1084118:1084135
WP_002482875.1|1012998_1013469_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_002482876.1|1013649_1014249_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_011302805.1|1014270_1014456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011302806.1|1014612_1015029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002482879.1|1015406_1016792_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_115338456.1|1016994_1017822_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_129530954.1|1018006_1019122_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_002482882.1|1019136_1019760_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_129530955.1|1019885_1021175_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_069822073.1|1021615_1021795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145437485.1|1021941_1022250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041080116.1|1022585_1023386_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011302813.1|1023859_1024711_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_002482887.1|1025139_1025604_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002482888.1|1025851_1026982_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_002482889.1|1027050_1027395_+	YlbF/YmcA family competence regulator	NA	NA	NA	NA	NA
WP_041080114.1|1027810_1028995_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_002482891.1|1028996_1031930_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_002482892.1|1031929_1032871_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_011302817.1|1033014_1034007_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_002482894.1|1034227_1034791_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_002482895.1|1034995_1035370_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
1035001:1035018	attL	TTTCATCTTTATCAAATG	NA	NA	NA	NA
WP_002482896.1|1035448_1035874_-	HIT family protein	NA	NA	NA	NA	NA
WP_002482897.1|1036002_1036740_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.5e-24
WP_041080112.1|1036736_1037960_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002482899.1|1038022_1038526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037538155.1|1038787_1039822_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_002482901.1|1039907_1040831_+	ferrochelatase	NA	NA	NA	NA	NA
WP_041080110.1|1040848_1042243_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_002482903.1|1042413_1042971_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_145437486.1|1044189_1045254_-|integrase	tyrosine-type recombinase/integrase	integrase	B7T092	Staphylococcus_virus	68.6	8.0e-139
WP_145437487.1|1045307_1046351_-	3'-5' exonuclease	NA	A0A0A8WJ41	Clostridium_phage	30.9	2.9e-16
WP_145437488.1|1046441_1046930_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JD66	uncultured_Caudovirales_phage	98.1	1.0e-88
WP_115343762.1|1046951_1047251_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9K2	uncultured_Caudovirales_phage	98.0	1.3e-46
WP_145437489.1|1047684_1047900_+	DUF771 domain-containing protein	NA	B7T098	Staphylococcus_virus	72.5	1.1e-23
WP_145437490.1|1048152_1048416_+	DUF1108 family protein	NA	A0A2H4JAN6	uncultured_Caudovirales_phage	43.7	3.1e-12
WP_069878031.1|1048412_1048637_+	DUF2483 family protein	NA	A0A0E3TAJ7	Staphylococcus_phage	90.4	4.4e-31
WP_145437491.1|1048626_1049331_+	AAA family ATPase	NA	A0A1W6JQH5	Staphylococcus_phage	88.7	5.5e-120
WP_145437492.1|1049314_1050655_+	DEAD/DEAH box helicase family protein	NA	Q9T1H9	Lactobacillus_phage	52.1	2.0e-126
WP_145437493.1|1050679_1051180_+	DUF669 domain-containing protein	NA	A0A059T5G4	Listeria_phage	46.1	1.5e-34
WP_145437494.1|1051200_1053510_+	DNA primase	NA	A0A059T6A4	Listeria_phage	48.0	9.9e-211
WP_145437495.1|1053794_1054148_+	VRR-NUC domain-containing protein	NA	A0A1W6JQP1	Staphylococcus_phage	79.6	2.3e-42
WP_145437496.1|1054107_1054311_+	hypothetical protein	NA	A0A2H4JC77	uncultured_Caudovirales_phage	91.0	6.6e-26
WP_145437497.1|1054324_1054678_+	hypothetical protein	NA	A0A2H4JF25	uncultured_Caudovirales_phage	59.1	1.4e-31
WP_145437498.1|1054678_1054888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145437499.1|1054865_1055096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145437500.1|1055097_1055784_+	N-6 DNA methylase	NA	B7T0H3	Staphylococcus_virus	67.0	1.8e-83
WP_145437501.1|1055983_1056259_+	hypothetical protein	NA	A0A1W6JQ72	Staphylococcus_phage	86.5	1.9e-28
WP_145437502.1|1056411_1056924_+	dUTP pyrophosphatase	NA	A0A2H4JB01	uncultured_Caudovirales_phage	76.3	1.2e-63
WP_145437503.1|1056960_1057185_+	DUF1381 domain-containing protein	NA	A0A2H4JI91	uncultured_Caudovirales_phage	90.2	1.2e-12
WP_145437504.1|1057181_1057313_+	transcriptional regulator	NA	U3PG58	Staphylococcus_phage	86.0	7.7e-12
WP_145437505.1|1057312_1057480_+	DUF1514 domain-containing protein	NA	U3PJ58	Staphylococcus_phage	92.6	3.7e-19
WP_145437506.1|1057495_1057969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145437507.1|1058060_1058456_+	hypothetical protein	NA	A0A2H4J610	uncultured_Caudovirales_phage	99.2	3.6e-68
WP_145437508.1|1058900_1059272_+	HNH endonuclease	NA	U3PD10	Staphylococcus_phage	95.4	1.9e-55
WP_145437509.1|1059408_1059879_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4J2Q1	uncultured_Caudovirales_phage	100.0	5.5e-84
WP_145437510.1|1059871_1061620_+|terminase	terminase large subunit	terminase	A0A2H4JA66	uncultured_Caudovirales_phage	99.7	0.0e+00
WP_145437638.1|1061877_1063053_+|portal	phage portal protein	portal	A0A2H4JAR2	uncultured_Caudovirales_phage	99.7	2.9e-222
WP_069795283.1|1063033_1063591_+|head,protease	HK97 family phage prohead protease	head,protease	U3PDW7	Staphylococcus_phage	100.0	7.0e-102
WP_145437511.1|1063642_1064980_+|capsid	phage major capsid protein	capsid	A0A2H4J2Q9	uncultured_Caudovirales_phage	91.5	1.9e-182
WP_145437512.1|1065162_1065501_+|head,tail	phage gp6-like head-tail connector protein	head,tail	U3PG07	Staphylococcus_phage	71.4	8.3e-42
WP_145437513.1|1065470_1065794_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4J5V5	uncultured_Caudovirales_phage	97.2	5.9e-53
WP_145437514.1|1065790_1066210_+	hypothetical protein	NA	U3PDX1	Staphylococcus_phage	93.5	1.2e-69
WP_145437515.1|1066202_1066616_+	hypothetical protein	NA	U3PBL6	Staphylococcus_phage	97.7	2.7e-66
WP_145437516.1|1066619_1067216_+	hypothetical protein	NA	A0A2H4JA75	uncultured_Caudovirales_phage	99.0	2.6e-107
WP_145437517.1|1067289_1067826_+	hypothetical protein	NA	A0A2H4J7U3	uncultured_Caudovirales_phage	99.4	2.2e-60
WP_145437518.1|1068023_1073597_+	peptidoglycan DD-metalloendopeptidase family protein	NA	U3PJ20	Staphylococcus_phage	78.3	0.0e+00
WP_145437639.1|1073624_1074443_+|tail	phage tail family protein	tail	U3PDX5	Staphylococcus_phage	70.4	3.3e-108
WP_145437519.1|1074451_1076284_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_145437520.1|1076381_1078844_+	hypothetical protein	NA	U3PDY0	Staphylococcus_phage	73.2	0.0e+00
WP_145437521.1|1079014_1079437_+	hypothetical protein	NA	A0A2H4JID2	uncultured_Caudovirales_phage	78.6	1.1e-59
WP_145437522.1|1079423_1079822_+	hypothetical protein	NA	A0A2H4JCM1	uncultured_Caudovirales_phage	86.4	7.5e-58
WP_145437523.1|1079864_1080152_+|holin	phage holin	holin	A0A2H4JAT1	uncultured_Caudovirales_phage	95.8	2.4e-45
WP_145437524.1|1080162_1081545_+	CHAP domain-containing protein	NA	A0A2H4J7F3	uncultured_Caudovirales_phage	93.3	8.7e-263
WP_145437525.1|1081692_1082034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002482971.1|1082130_1082541_+	YolD-like family protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	94.1	2.3e-70
WP_037538230.1|1082855_1083047_+	hypothetical protein	NA	A0A2H4J314	uncultured_Caudovirales_phage	60.7	2.5e-11
WP_145437526.1|1083120_1084920_+	glycosyltransferase	NA	NA	NA	NA	NA
1084118:1084135	attR	CATTTGATAAAGATGAAA	NA	NA	NA	NA
WP_037538157.1|1085981_1087364_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	61.1	1.2e-166
WP_041080052.1|1087383_1088388_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	49.7	1.7e-90
WP_011302826.1|1088377_1088629_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.1	4.2e-30
WP_041080050.1|1088688_1089165_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	53.5	2.8e-43
WP_041080136.1|1089172_1089940_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.4	1.5e-99
WP_129320809.1|1090035_1091625_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.6	5.5e-261
WP_002482910.1|1092013_1093210_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.4	2.6e-194
WP_002482911.1|1093308_1094217_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.8	4.3e-101
WP_002482912.1|1094425_1095262_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.2	2.5e-111
WP_037538161.1|1095531_1095888_-	CrcB family protein	NA	NA	NA	NA	NA
WP_011302834.1|1095884_1096250_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.8	3.3e-36
WP_011302835.1|1096460_1096766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002482913.1|1097050_1097764_+	transaldolase	NA	E3SKN5	Synechococcus_phage	35.8	5.0e-20
WP_129320808.1|1098138_1098780_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011302838.1|1098879_1099329_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.5	1.3e-21
WP_041080046.1|1099336_1099762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129320807.1|1099775_1100246_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	44.4	9.9e-25
WP_002482918.1|1100466_1100691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129320806.1|1100858_1101710_+	autolysin	NA	A0A0E3T9J6	Staphylococcus_phage	43.3	1.7e-38
WP_037538233.1|1101932_1102859_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002482974.1|1103033_1104500_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	58.6	5.5e-13
WP_041080040.1|1105040_1106084_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	2.3e-130
WP_002482976.1|1106090_1106723_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	64.8	5.0e-72
WP_041080038.1|1106734_1107916_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	71.2	2.1e-164
WP_041080037.1|1107929_1108388_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.7	1.5e-57
WP_037538235.1|1108652_1109654_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	68.5	4.3e-126
WP_037538238.1|1109920_1110745_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_041080035.1|1110980_1111937_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002482982.1|1112089_1112491_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_145437527.1|1112610_1113171_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	63.8	2.1e-66
WP_002482984.1|1113167_1114121_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.0	1.9e-67
WP_075340108.1|1114230_1115400_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	77.2	2.2e-166
WP_069822067.1|1115928_1118343_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.3	0.0e+00
WP_002482987.1|1118361_1118673_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	4.5e-34
WP_041080032.1|1118868_1120122_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	77.2	1.9e-38
>prophage 2
NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	2605152	1241895	1251018	2605152	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002483095.1|1241895_1242900_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	1.7e-05
WP_145437531.1|1242902_1243928_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_145437532.1|1243948_1245094_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	3.5e-84
WP_011302951.1|1245109_1245370_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	7.4e-06
WP_145437533.1|1245750_1248027_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.2	3.8e-29
WP_069837975.1|1248207_1250487_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.4	2.9e-69
WP_002483102.1|1250499_1251018_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.2	6.6e-30
>prophage 3
NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	2605152	1377323	1387286	2605152		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
WP_069822000.1|1377323_1378211_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.4	6.6e-38
WP_002483231.1|1378279_1378786_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_041080657.1|1378877_1379612_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	23.6	1.8e-09
WP_002483233.1|1379595_1380144_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.4	2.1e-10
WP_002483234.1|1380136_1380874_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_145437540.1|1381000_1381705_+	response regulator	NA	W8CYM9	Bacillus_phage	42.6	8.1e-47
WP_037538600.1|1381709_1383473_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	24.0	7.8e-22
WP_037538408.1|1383895_1384441_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002483238.1|1384596_1384845_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	4.9e-15
WP_002483239.1|1384954_1385914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041080659.1|1385906_1387286_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	32.7	2.4e-55
>prophage 4
NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	2605152	1822169	1830644	2605152		Synechococcus_phage(16.67%)	9	NA	NA
WP_011303433.1|1822169_1822736_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.2	9.7e-27
WP_041079047.1|1822738_1823767_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.5	9.3e-68
WP_041079046.1|1823759_1825247_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.2	6.5e-46
WP_145437583.1|1825225_1827415_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	2.0e-136
WP_011303437.1|1827407_1828079_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002483703.1|1828078_1828339_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_041079043.1|1828341_1829043_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SE76	Cyanophage	42.5	6.8e-46
WP_115338601.1|1829047_1830175_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_037538847.1|1830161_1830644_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	2.6e-20
>prophage 5
NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	2605152	2076332	2095062	2605152		uncultured_Caudovirales_phage(33.33%)	14	NA	NA
WP_037538964.1|2076332_2077301_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	1.5e-136
WP_002483928.1|2077714_2078683_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	94.4	2.2e-175
WP_037538966.1|2078804_2080910_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	90.2	0.0e+00
WP_129303476.1|2080872_2081271_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	77.3	2.9e-54
WP_011303649.1|2081997_2082885_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002483932.1|2082898_2083399_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	2.0e-52
WP_011303650.1|2083582_2085097_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.8	9.5e-69
WP_002483934.1|2085466_2086972_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	1.1e-64
WP_115338644.1|2087441_2088389_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	24.4	2.1e-10
WP_002483937.1|2088558_2089107_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	39.0	2.0e-29
WP_041079716.1|2089284_2090340_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	27.2	2.3e-21
WP_041079717.1|2090498_2092016_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_002483940.1|2092012_2092975_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.5	4.8e-26
WP_011303656.1|2093283_2095062_-	DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	36.8	5.9e-78
>prophage 6
NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	2605152	2103363	2110912	2605152		Pandoravirus(16.67%)	9	NA	NA
WP_069825721.1|2103363_2104506_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	36.7	5.4e-24
WP_011303664.1|2104489_2105083_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	41.5	1.9e-36
WP_069821746.1|2105338_2106010_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	1.2e-63
WP_069819972.1|2106011_2106437_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_041079723.1|2106429_2107146_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.0	5.5e-51
WP_002483953.1|2107386_2107980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483954.1|2108048_2108300_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_075340015.1|2108517_2109579_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	42.3	8.7e-61
WP_002483956.1|2110072_2110912_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.2e-52
>prophage 7
NZ_CP031196	Staphylococcus saprophyticus strain 1A chromosome, complete genome	2605152	2465517	2502140	2605152	transposase,protease	Staphylococcus_phage(40.0%)	37	NA	NA
WP_069820346.1|2465517_2466132_-|protease	protease	protease	NA	NA	NA	NA
WP_126424531.1|2466173_2466572_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_126424532.1|2466612_2466957_-	DUF4260 domain-containing protein	NA	NA	NA	NA	NA
WP_052463671.1|2467160_2467496_+	DUF4870 domain-containing protein	NA	A0A2H4J741	uncultured_Caudovirales_phage	45.1	3.2e-09
WP_075339907.1|2467550_2467964_+	YxeA family protein	NA	NA	NA	NA	NA
WP_126424533.1|2468423_2468807_-	YxeA family protein	NA	NA	NA	NA	NA
WP_069821903.1|2469429_2469681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081324769.1|2469954_2470353_+	SdpI family protein	NA	NA	NA	NA	NA
WP_069821904.1|2470826_2471096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081324770.1|2472215_2472551_+	protein rep	NA	NA	NA	NA	NA
WP_063489141.1|2473274_2473703_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	37.4	2.0e-08
WP_041080315.1|2473918_2474908_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_001105987.1|2476887_2477562_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_002483573.1|2477752_2478493_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_081324747.1|2478732_2479008_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_069821682.1|2479080_2480505_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_069821681.1|2480840_2481380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041080313.1|2481777_2483877_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	36.4	7.9e-114
WP_041080871.1|2484252_2486244_-	catalase	NA	A0A2K9L572	Tupanvirus	48.6	1.8e-144
WP_075340115.1|2486659_2487232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484385.1|2487598_2488207_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	35.9	9.5e-20
WP_002483618.1|2488457_2489471_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	22.6	3.3e-09
WP_041080868.1|2489775_2490234_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041080866.1|2490220_2491564_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_115338737.1|2491655_2492330_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	6.4e-126
WP_002484388.1|2492624_2492927_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_115338737.1|2492988_2493663_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	6.4e-126
WP_080773305.1|2494283_2494775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069821790.1|2494779_2495394_+	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_145437628.1|2495715_2496399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069821793.1|2496535_2498011_-	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_041080859.1|2498169_2498988_-	anti-sigma factor	NA	NA	NA	NA	NA
WP_041080858.1|2498977_2499547_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_040138587.1|2499953_2500691_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_040138588.1|2500708_2500945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002510758.1|2501172_2501268_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001105999.1|2501465_2502140_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
>prophage 1
NZ_CP031197	Staphylococcus saprophyticus strain 1A plasmid unnamed1	30637	98	30612	30637	terminase,capsid,head,portal,tail	Staphylococcus_phage(67.44%)	46	NA	NA
WP_145437645.1|98_815_-	helix-turn-helix domain-containing protein	NA	A0A0D4DD29	Staphylococcus_phage	93.3	5.8e-125
WP_053033175.1|2205_2745_+	hypothetical protein	NA	A0A2H4J1Z3	uncultured_Caudovirales_phage	48.7	6.0e-26
WP_145437646.1|2782_3016_+	DUF2829 domain-containing protein	NA	A0A0N9SKI8	Staphylococcus_phage	81.8	3.7e-33
WP_145437647.1|3541_3838_+	chordopoxvirus fusion protein	NA	NA	NA	NA	NA
WP_145437648.1|3809_4037_+	DUF2483 family protein	NA	H9A0Y6	Staphylococcus_phage	93.3	6.8e-32
WP_145437649.1|4029_4653_+	single-stranded DNA-binding protein	NA	A0A1W6JP43	Staphylococcus_phage	97.6	9.8e-113
WP_145437650.1|4655_5261_+	single-stranded DNA-binding protein	NA	A0A1W6JP64	Staphylococcus_phage	95.5	7.9e-59
WP_145437651.1|5272_5962_+	DUF968 domain-containing protein	NA	A0A2H4JE98	uncultured_Caudovirales_phage	95.5	8.8e-123
WP_145437652.1|5939_6170_+	helix-turn-helix domain-containing protein	NA	A0A1W6JPC4	Staphylococcus_phage	89.5	2.6e-31
WP_145437653.1|6176_6392_+	helix-turn-helix domain-containing protein	NA	Q4ZC20	Staphylococcus_virus	60.0	3.2e-15
WP_145437654.1|6384_6894_+	AP2 domain-containing protein	NA	A0A1W6JP61	Staphylococcus_phage	59.5	1.6e-44
WP_145437655.1|6886_7672_+	replication protein	NA	A0A1W6JP67	Staphylococcus_phage	79.3	7.8e-107
WP_145437656.1|7684_8455_+	ATP-binding protein	NA	A0A2H4JC46	uncultured_Caudovirales_phage	98.8	3.6e-141
WP_145437657.1|8606_8831_+	DUF3269 family protein	NA	H9A0S3	Staphylococcus_phage	87.8	2.2e-30
WP_145437658.1|8841_9258_+	DUF1064 domain-containing protein	NA	A1BU01	Staphylococcus_virus	95.7	3.0e-73
WP_145360727.1|9244_9628_+	hypothetical protein	NA	A0A2H4JFL4	uncultured_Caudovirales_phage	70.2	2.1e-41
WP_049391225.1|9627_9819_+	hypothetical protein	NA	A0A2H4J5U8	uncultured_Caudovirales_phage	88.9	1.2e-24
WP_145437659.1|9819_10179_+	hypothetical protein	NA	A0A2H4J5X6	uncultured_Caudovirales_phage	95.0	8.0e-59
WP_145437660.1|10175_10619_+	DUF3310 domain-containing protein	NA	A0A2H4JCG6	uncultured_Caudovirales_phage	96.6	3.1e-76
WP_145437661.1|10621_11302_+	hypothetical protein	NA	A0A141VTS7	Staphylococcus_phage	96.0	2.0e-127
WP_145437662.1|11321_11627_+	hypothetical protein	NA	H9A0T4	Staphylococcus_phage	80.8	7.3e-37
WP_145437663.1|11613_11841_+	hypothetical protein	NA	A0A2H4J7L0	uncultured_Caudovirales_phage	84.0	1.2e-28
WP_001830278.1|11995_12232_+	hypothetical protein	NA	I6TK19	Staphylococcus_virus	100.0	5.4e-40
WP_103416117.1|12534_12852_+	hypothetical protein	NA	A0A2H4J2H9	uncultured_Caudovirales_phage	95.2	2.1e-50
WP_002468977.1|12900_13071_+	transcriptional activator RinB	NA	A1BUB4	Staphylococcus_virus	94.6	2.1e-25
WP_145437664.1|13072_13477_+	hypothetical protein	NA	I6T7R9	Staphylococcus_virus	89.6	4.3e-61
WP_145437665.1|13619_14039_+	transcriptional regulator	NA	I1W651	Staphylococcus_phage	79.1	2.5e-56
WP_145437666.1|14049_14316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145437667.1|14511_14958_+|terminase	terminase small subunit	terminase	A0A1J0MFQ9	Staphylococcus_phage	89.0	2.9e-66
WP_145437668.1|14944_16225_+|terminase	PBSX family phage terminase large subunit	terminase	I1W649	Staphylococcus_phage	85.0	4.8e-215
WP_145437669.1|16237_17770_+|portal	phage portal protein	portal	A0A1W6JNP8	Staphylococcus_phage	83.7	3.3e-247
WP_145437670.1|17776_18727_+|head	phage head morphogenesis protein	head	A0A1W6JNS6	Staphylococcus_phage	80.1	3.0e-145
WP_145437671.1|18746_19289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145437683.1|19678_20284_+	DUF4355 domain-containing protein	NA	A0A1W6JNT6	Staphylococcus_phage	58.6	1.8e-18
WP_145437672.1|20299_21226_+|capsid	phage major capsid protein	capsid	A0A1W6JNT3	Staphylococcus_phage	88.6	5.8e-154
WP_145437673.1|21247_21517_+	hypothetical protein	NA	A0A1W6JNX0	Staphylococcus_phage	68.5	1.3e-26
WP_145437674.1|21518_21848_+|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	78.0	1.1e-41
WP_145437675.1|21844_22147_+	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	77.0	1.1e-40
WP_145437676.1|22146_22509_+	hypothetical protein	NA	A0A1W6JNQ6	Staphylococcus_phage	77.4	3.5e-46
WP_145437677.1|22508_22898_+	hypothetical protein	NA	A0A1W6JNQ3	Staphylococcus_phage	72.1	5.8e-47
WP_145437678.1|22941_23496_+|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNU0	Staphylococcus_phage	88.6	9.1e-86
WP_145437679.1|23560_23920_+|tail	phage tail protein	tail	A0A1W6JNQ1	Staphylococcus_phage	58.0	2.9e-32
WP_145360719.1|23961_24306_+	hypothetical protein	NA	A0A1W6JNR9	Staphylococcus_phage	78.9	6.3e-45
WP_145437680.1|24320_28172_+|tail	phage tail protein	tail	H9A0P1	Staphylococcus_phage	35.7	7.9e-11
WP_145437681.1|28183_29140_+|tail	phage tail family protein	tail	A0A1W6JNU3	Staphylococcus_phage	71.8	5.3e-134
WP_145437682.1|29151_30612_+	hypothetical protein	NA	A0A1W6JNY1	Staphylococcus_phage	70.0	7.1e-154
