The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031266	Staphylococcus agnetis strain 12B chromosome, complete genome	2345021	118451	179749	2345021	holin,transposase,protease	Staphylococcus_phage(27.27%)	57	NA	NA
WP_145050658.1|118451_118973_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_145050661.1|118979_119198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145050664.1|119432_120185_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_145050667.1|120467_121226_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_085622600.1|121450_122158_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_145050670.1|122168_123530_+	MFS transporter	NA	NA	NA	NA	NA
WP_145050675.1|123542_124205_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_145050678.1|124234_125410_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_082624797.1|125612_126404_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_145050681.1|126420_127161_-	NAD-dependent protein deacylase	NA	A0A068EPD4	Bacillus_phage	32.1	2.5e-30
WP_145050684.1|127226_127817_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_145050687.1|128000_128504_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_145050690.1|128685_130110_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_107401281.1|130156_130627_+	tryptophan-rich sensory protein	NA	A0A1V0S976	Catovirus	25.0	2.3e-05
WP_107401280.1|130660_132052_+	deoxyribodipyrimidine photo-lyase	NA	F2Y1V1	Organic_Lake_phycodnavirus	28.9	1.2e-38
WP_145050693.1|132063_132672_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_145050696.1|132795_133989_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_037565645.1|134113_134317_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_145050699.1|134313_135033_+	DUF3169 family protein	NA	NA	NA	NA	NA
WP_145052708.1|136097_137420_+	MFS transporter	NA	NA	NA	NA	NA
WP_145050701.1|137572_138133_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_145050704.1|138461_139643_+|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	51.6	2.9e-20
WP_145050706.1|139639_140275_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_145050709.1|140293_141235_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_037565653.1|141234_141912_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_107390331.1|141927_142695_+	tributyrin esterase	NA	NA	NA	NA	NA
WP_145050712.1|142840_143950_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_145050715.1|143943_145290_+	ferrous iron transporter B	NA	NA	NA	NA	NA
WP_145050718.1|145474_146170_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_145050721.1|146192_147134_-	carbamate kinase	NA	NA	NA	NA	NA
WP_145050724.1|147150_148578_-	arginine-ornithine antiporter	NA	NA	NA	NA	NA
WP_145050727.1|148656_149664_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_145050730.1|149687_150920_-	arginine deiminase	NA	NA	NA	NA	NA
WP_145050734.1|151162_151621_-	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_145050737.1|151897_153094_+	MFS transporter	NA	NA	NA	NA	NA
WP_145050740.1|153205_153316_-	DUF2648 domain-containing protein	NA	NA	NA	NA	NA
WP_037565663.1|153333_154827_-	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_145050743.1|154987_155488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145050746.1|159043_160510_-	amino acid permease	NA	NA	NA	NA	NA
WP_145050749.1|161072_161873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145050751.1|162494_163295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145050754.1|163391_164018_+	DUF4064 domain-containing protein	NA	NA	NA	NA	NA
WP_145050757.1|164263_164932_+	response regulator	NA	NA	NA	NA	NA
WP_145050760.1|165014_165929_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.7	2.8e-31
WP_145050763.1|165921_166674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145050766.1|166691_167609_+	GHKL domain-containing protein	NA	W8CYF6	Bacillus_phage	27.1	2.7e-10
WP_145050769.1|167794_168460_+	response regulator	NA	NA	NA	NA	NA
WP_145050772.1|168531_169206_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	86.6	6.9e-112
WP_145050775.1|169464_170442_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	85.2	1.7e-159
WP_145050778.1|170632_171676_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_145050781.1|171672_172359_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.9	1.3e-33
WP_145050784.1|172351_173545_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_145050787.1|173763_174246_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	6.4e-19
WP_145050790.1|175162_176323_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_145050793.1|176549_177944_-	coagulase	NA	NA	NA	NA	NA
WP_145050796.1|178442_178796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145050799.1|179074_179749_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	84.8	1.6e-108
>prophage 2
NZ_CP031266	Staphylococcus agnetis strain 12B chromosome, complete genome	2345021	1003701	1024793	2345021		Staphylococcus_phage(94.44%)	23	NA	NA
WP_145051552.1|1003701_1005108_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	52.4	1.1e-135
WP_145051555.1|1005104_1006094_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	47.1	1.1e-86
WP_037565613.1|1006090_1006321_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	78.4	2.9e-30
WP_060551303.1|1006383_1006854_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	49.0	2.9e-40
WP_145051558.1|1006834_1007620_+	prolyl oligopeptidase family serine peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	60.8	2.7e-83
WP_060551301.1|1007644_1009225_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	76.4	1.4e-243
WP_037565609.1|1009656_1010856_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	79.6	1.6e-180
WP_060551299.1|1010944_1011853_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	69.0	1.6e-92
WP_107371210.1|1012066_1012903_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	64.1	1.5e-100
WP_060551297.1|1013087_1013453_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_060551296.1|1013449_1013815_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	52.1	2.9e-24
WP_037565604.1|1013835_1014138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037565603.1|1014291_1015002_+	transaldolase	NA	M1PR54	Cyanophage	38.5	2.6e-21
WP_145051561.1|1015095_1015545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107369012.1|1015527_1015962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145051564.1|1015977_1016484_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	35.2	2.8e-17
WP_037565599.1|1016639_1016864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551292.1|1017027_1017894_+	autolysin	NA	A0A0E3T9J6	Staphylococcus_phage	41.0	3.8e-38
WP_145051567.1|1018210_1019983_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	56.5	1.3e-13
WP_145051571.1|1020310_1021357_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	52.5	2.2e-104
WP_145051575.1|1022003_1023185_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	66.2	4.5e-151
WP_037565594.1|1023196_1023655_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	65.8	2.4e-52
WP_145051579.1|1023752_1024793_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	66.4	8.7e-122
>prophage 3
NZ_CP031266	Staphylococcus agnetis strain 12B chromosome, complete genome	2345021	1028349	1035573	2345021	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_060551283.1|1028349_1028913_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	53.0	9.6e-51
WP_107368794.1|1028909_1029869_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	77.8	1.0e-60
WP_060551281.1|1029980_1031162_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	64.1	2.2e-137
WP_145051582.1|1031522_1033934_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	80.6	0.0e+00
WP_037565581.1|1033956_1034268_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	67.0	4.2e-32
WP_145051585.1|1034310_1035573_-	aminoacetone oxidase family FAD-binding enzyme	NA	A0A2H4PQX1	Staphylococcus_phage	76.7	1.7e-31
>prophage 4
NZ_CP031266	Staphylococcus agnetis strain 12B chromosome, complete genome	2345021	1147531	1157045	2345021	tRNA	uncultured_Mediterranean_phage(50.0%)	6	NA	NA
WP_060551194.1|1147531_1148671_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.5	2.4e-88
WP_037565473.1|1148687_1148951_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	49.1	8.8e-07
WP_145051664.1|1149259_1151539_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	31.5	1.1e-28
WP_145051667.1|1151631_1153914_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.1	1.4e-68
WP_037565470.1|1153925_1154444_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	48.8	4.0e-27
WP_037565469.1|1154855_1157045_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	35.5	1.9e-09
>prophage 5
NZ_CP031266	Staphylococcus agnetis strain 12B chromosome, complete genome	2345021	1285739	1297407	2345021		Bacillus_phage(37.5%)	15	NA	NA
WP_107369016.1|1285739_1286648_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	33.1	7.6e-05
WP_060551095.1|1286726_1287269_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_060551094.1|1287372_1287825_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_145051844.1|1287861_1288749_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.8	1.6e-39
WP_103346429.1|1288769_1289258_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_060551093.1|1289369_1290104_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.4	7.2e-06
WP_060551092.1|1290087_1290633_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	41.9	1.5e-08
WP_145051848.1|1290629_1291370_+	pseudouridine synthase	NA	NA	NA	NA	NA
WP_060551091.1|1291497_1292223_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.4	2.7e-45
WP_060552477.1|1292206_1293949_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	31.3	3.1e-31
WP_145051851.1|1294067_1294616_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_037564263.1|1294734_1294983_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	53.3	3.1e-17
WP_145051854.1|1295088_1295523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145051857.1|1295579_1296041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145051860.1|1296030_1297407_+	RecQ family ATP-dependent DNA helicase	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	34.1	5.1e-53
>prophage 6
NZ_CP031266	Staphylococcus agnetis strain 12B chromosome, complete genome	2345021	1613432	1623966	2345021	integrase	Staphylococcus_virus(38.46%)	17	1609823:1609841	1624028:1624046
1609823:1609841	attL	ATCCCTCCCAGGACGCTAA	NA	NA	NA	NA
WP_145052079.1|1613432_1614869_-	hypothetical protein	NA	Q4ZC44	Staphylococcus_virus	87.9	2.2e-168
WP_145052083.1|1614865_1615084_-	DUF2483 family protein	NA	Q4ZC24	Staphylococcus_virus	95.8	1.6e-33
WP_145052086.1|1615080_1615350_-	hypothetical protein	NA	Q4ZC25	Staphylococcus_virus	96.6	3.5e-43
WP_145052089.1|1615740_1616067_-	DUF771 domain-containing protein	NA	Q4ZD49	Staphylococcus_phage	82.9	1.2e-45
WP_145052092.1|1616451_1616658_-	hypothetical protein	NA	Q4ZB74	Staphylococcus_virus	62.7	3.4e-14
WP_145052095.1|1616982_1617210_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	94.6	4.0e-32
WP_145052098.1|1617209_1617710_-	hypothetical protein	NA	A0A2H4J854	uncultured_Caudovirales_phage	79.0	1.9e-66
WP_145052101.1|1617771_1617984_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	74.3	6.8e-26
WP_145052103.1|1618010_1618205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145052106.1|1618216_1619101_-	DUF3102 domain-containing protein	NA	A0A2H4J4L1	uncultured_Caudovirales_phage	65.3	5.2e-67
WP_145052109.1|1619114_1619363_-	helix-turn-helix domain-containing protein	NA	A0A1J0MFJ4	Staphylococcus_phage	93.5	1.5e-35
WP_145052112.1|1619554_1619884_+	helix-turn-helix domain-containing protein	NA	A0A2H4J641	uncultured_Caudovirales_phage	91.7	4.0e-49
WP_145052115.1|1619896_1620358_+	ImmA/IrrE family metallo-endopeptidase	NA	Q4ZC40	Staphylococcus_virus	76.5	2.9e-61
WP_145052118.1|1621224_1621413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145052120.1|1621440_1621806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145052123.1|1621899_1622886_+	Abi family protein	NA	NA	NA	NA	NA
WP_145052126.1|1622940_1623966_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0D4DCG3	Staphylococcus_phage	94.7	5.8e-187
1624028:1624046	attR	ATCCCTCCCAGGACGCTAA	NA	NA	NA	NA
>prophage 7
NZ_CP031266	Staphylococcus agnetis strain 12B chromosome, complete genome	2345021	1706062	1714490	2345021		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_145052182.1|1706062_1706629_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	37.8	3.7e-26
WP_145052185.1|1706631_1707660_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.9	1.4e-63
WP_145052188.1|1707664_1709086_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.2	2.7e-49
WP_145052190.1|1709064_1711254_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.3	6.9e-137
WP_039646367.1|1711246_1711918_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_037566003.1|1711917_1712187_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_145052193.1|1712189_1712897_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.9	6.2e-47
WP_060550787.1|1712893_1714021_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_107368606.1|1714007_1714490_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	1.0e-21
>prophage 8
NZ_CP031266	Staphylococcus agnetis strain 12B chromosome, complete genome	2345021	1940552	1950014	2345021		uncultured_Caudovirales_phage(33.33%)	8	NA	NA
WP_060552442.1|1940552_1942658_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	86.0	0.0e+00
WP_037567834.1|1942629_1943019_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	62.8	1.5e-42
WP_060552441.1|1943728_1944613_+	DMT family transporter	NA	NA	NA	NA	NA
WP_037567828.1|1944626_1945127_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	7.7e-52
WP_060552440.1|1945538_1947050_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.7	1.4e-72
WP_037567823.1|1947369_1948299_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	23.9	1.2e-10
WP_081858238.1|1948359_1948890_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_145052309.1|1948964_1950014_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.1	1.2e-17
>prophage 9
NZ_CP031266	Staphylococcus agnetis strain 12B chromosome, complete genome	2345021	2274688	2281003	2345021	coat,terminase	Staphylococcus_phage(85.71%)	7	NA	NA
WP_145052588.1|2274688_2275171_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	71.9	1.8e-58
WP_145052591.1|2275167_2275512_-	pathogenicity island protein	NA	A0A1W6JQM3	Staphylococcus_phage	65.8	9.1e-36
WP_145052593.1|2275514_2276042_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	77.7	1.4e-67
WP_145052595.1|2276094_2276790_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	31.0	3.6e-31
WP_145052598.1|2277774_2278050_-	pathogenicity island protein	NA	Q4ZE68	Staphylococcus_phage	71.6	1.2e-30
WP_145052601.1|2278036_2278840_-	DNA primase	NA	Q4ZE69	Staphylococcus_phage	83.1	3.0e-130
WP_145052604.1|2280706_2281003_-	DUF1474 family protein	NA	A0A2H4JB50	uncultured_Caudovirales_phage	41.1	2.4e-16
