assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	1	780460-780540	1	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	12	780486-780514|780486-780514|780486-780514|780486-780514|780486-780514|780486-780514|780486-780514|780486-780514|780486-780514|780486-780514|780486-780514|780486-780514	NZ_CP031265.1_2693171-2693199|NZ_CP031265.1_343120-343092|NZ_CP031265.1_1465904-1465876|NZ_CP031265.1_1778004-1777976|NZ_CP031265.1_785920-785948|NZ_CP031265.1_828046-828074|NZ_CP031265.1_828103-828131|NZ_CP031265.1_1600590-1600618|NZ_CP031265.1_142177-142149|NZ_CP031265.1_142235-142207|NZ_CP031265.1_1135040-1135012|NZ_CP031265.1_1135151-1135123	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|NZ_CP031265.1_771373_771478_+,NA|36aa|up_5|NZ_CP031265.1_772910_773018_+,NA	NA|191aa|up_9|NZ_CP031265.1_767814_768387_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP031265.1_768800_771332_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP031265.1_771373_771478_+	NA	NA|370aa|up_6|NZ_CP031265.1_771646_772757_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP031265.1_772910_773018_+	NA	NA|280aa|up_4|NZ_CP031265.1_773165_774005_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP031265.1_774178_774829_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP031265.1_774825_775062_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP031265.1_775330_777316_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP031265.1_777323_780170_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP031265.1_780776_781709_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP031265.1_781714_782554_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP031265.1_782561_783047_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP031265.1_783054_784494_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP031265.1_784560_785496_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP031265.1_786260_787172_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP031265.1_787168_788164_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP031265.1_788274_789219_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP031265.1_789791_790379_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP031265.1_790621_791524_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	2	1131011-1131093	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ACAATGCAAGTTGGCGGGGCCACAACA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_6|NZ_CP031265.1_1126767_1126935_+,NA|34aa|up_4|NZ_CP031265.1_1127763_1127865_-,NA|169aa|up_2|NZ_CP031265.1_1128884_1129391_+,NA|62aa|down_0|NZ_CP031265.1_1131302_1131488_-,NA|83aa|down_1|NZ_CP031265.1_1131694_1131943_-,NA|78aa|down_2|NZ_CP031265.1_1132106_1132340_-,NA|49aa|down_4|NZ_CP031265.1_1134448_1134595_+,NA|75aa|down_5|NZ_CP031265.1_1134551_1134776_+	NA|267aa|up_9|NZ_CP031265.1_1124744_1125545_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_8|NZ_CP031265.1_1125556_1126144_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_7|NZ_CP031265.1_1126136_1126640_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_6|NZ_CP031265.1_1126767_1126935_+	NA	NA|106aa|up_5|NZ_CP031265.1_1127128_1127446_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|34aa|up_4|NZ_CP031265.1_1127763_1127865_-	NA	NA|133aa|up_3|NZ_CP031265.1_1127815_1128214_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NZ_CP031265.1_1128884_1129391_+	NA	NA|166aa|up_1|NZ_CP031265.1_1129649_1130147_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NZ_CP031265.1_1130300_1130651_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NZ_CP031265.1_1131302_1131488_-	NA	NA|83aa|down_1|NZ_CP031265.1_1131694_1131943_-	NA	NA|78aa|down_2|NZ_CP031265.1_1132106_1132340_-	NA	NA|320aa|down_3|NZ_CP031265.1_1132816_1133776_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_4|NZ_CP031265.1_1134448_1134595_+	NA	NA|75aa|down_5|NZ_CP031265.1_1134551_1134776_+	NA	NA|239aa|down_6|NZ_CP031265.1_1135332_1136049_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_7|NZ_CP031265.1_1136156_1136882_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_8|NZ_CP031265.1_1136976_1137702_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_9|NZ_CP031265.1_1138139_1139141_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	3	1634882-1634967	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTGTGTTGGGGCCCCATCCCCAACTT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|NZ_CP031265.1_1638972_1639119_-,NA|43aa|down_8|NZ_CP031265.1_1642155_1642284_-	NA|208aa|up_9|NZ_CP031265.1_1623618_1624242_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP031265.1_1624241_1625510_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP031265.1_1625521_1626445_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP031265.1_1626447_1627086_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP031265.1_1627370_1627679_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP031265.1_1627693_1628122_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP031265.1_1628125_1628386_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP031265.1_1628448_1631079_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP031265.1_1631421_1633899_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP031265.1_1633900_1634569_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP031265.1_1635149_1636268_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP031265.1_1636268_1637411_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP031265.1_1637722_1638736_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP031265.1_1638972_1639119_-	NA	NA|61aa|down_4|NZ_CP031265.1_1639158_1639341_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP031265.1_1639440_1639863_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP031265.1_1639947_1641222_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP031265.1_1641382_1642156_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP031265.1_1642155_1642284_-	NA	NA|589aa|down_9|NZ_CP031265.1_1642616_1644383_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	4	1720617-1720703	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACATAGA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|33aa|down_4|NZ_CP031265.1_1725027_1725126_-	NA|423aa|up_9|NZ_CP031265.1_1704994_1706263_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP031265.1_1706311_1707433_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP031265.1_1707780_1709142_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP031265.1_1709489_1711247_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP031265.1_1711268_1712237_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP031265.1_1712505_1713450_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP031265.1_1713449_1714307_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP031265.1_1714501_1715731_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP031265.1_1716180_1719378_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP031265.1_1719398_1720340_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP031265.1_1720793_1722092_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP031265.1_1722296_1722710_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP031265.1_1723014_1723704_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP031265.1_1723878_1724934_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|33aa|down_4|NZ_CP031265.1_1725027_1725126_-	NA	NA|373aa|down_5|NZ_CP031265.1_1725249_1726368_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_CP031265.1_1726508_1727009_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_CP031265.1_1727254_1728457_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_CP031265.1_1728544_1729492_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_CP031265.1_1729614_1730109_-	PRK00522, tpx, thiol peroxidase
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	5	1894867-1894997	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTCGTTCC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_7|NZ_CP031265.1_1887021_1887417_-,NA|51aa|up_6|NZ_CP031265.1_1888022_1888175_-,NA|77aa|down_9|NZ_CP031265.1_1913104_1913335_+	NA|274aa|up_9|NZ_CP031265.1_1884158_1884980_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP031265.1_1885440_1886826_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP031265.1_1887021_1887417_-	NA	NA|51aa|up_6|NZ_CP031265.1_1888022_1888175_-	NA	NA|200aa|up_5|NZ_CP031265.1_1888199_1888799_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP031265.1_1888957_1889428_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP031265.1_1889432_1890575_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP031265.1_1890710_1891439_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP031265.1_1891425_1892883_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP031265.1_1893140_1894202_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP031265.1_1903060_1903507_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP031265.1_1903603_1904554_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP031265.1_1904559_1905015_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP031265.1_1905095_1906385_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP031265.1_1906677_1907772_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP031265.1_1907963_1909700_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP031265.1_1909990_1910533_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP031265.1_1910834_1911872_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP031265.1_1912023_1913001_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|77aa|down_9|NZ_CP031265.1_1913104_1913335_+	NA
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	6	2143761-2143841	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP031265.1_2138594_2138825_-,NA|364aa|up_0|NZ_CP031265.1_2142614_2143706_+,NA|35aa|down_0|NZ_CP031265.1_2144176_2144281_-,NA|61aa|down_1|NZ_CP031265.1_2144713_2144896_-,NA|53aa|down_2|NZ_CP031265.1_2144960_2145119_+,NA|31aa|down_3|NZ_CP031265.1_2145555_2145648_+	NA|237aa|up_9|NZ_CP031265.1_2134204_2134915_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP031265.1_2135035_2135479_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP031265.1_2135678_2136092_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP031265.1_2136549_2137923_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP031265.1_2138594_2138825_-	NA	NA|313aa|up_4|NZ_CP031265.1_2138855_2139794_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP031265.1_2140229_2140895_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP031265.1_2141046_2141367_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP031265.1_2141368_2142349_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP031265.1_2142614_2143706_+	NA	NA|35aa|down_0|NZ_CP031265.1_2144176_2144281_-	NA	NA|61aa|down_1|NZ_CP031265.1_2144713_2144896_-	NA	NA|53aa|down_2|NZ_CP031265.1_2144960_2145119_+	NA	NA|31aa|down_3|NZ_CP031265.1_2145555_2145648_+	NA	NA|286aa|down_4|NZ_CP031265.1_2145777_2146635_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP031265.1_2146702_2147485_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NZ_CP031265.1_2147716_2149522_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NZ_CP031265.1_2150202_2151741_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NZ_CP031265.1_2151775_2153908_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NZ_CP031265.1_2153919_2154354_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	7	2156083-2156169	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	GCCAACTGATGTTTGCGTATCATTAGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|61aa|up_9|NZ_CP031265.1_2144713_2144896_-,NA|53aa|up_8|NZ_CP031265.1_2144960_2145119_+,NA|31aa|up_7|NZ_CP031265.1_2145555_2145648_+,NA	NA|61aa|up_9|NZ_CP031265.1_2144713_2144896_-	NA	NA|53aa|up_8|NZ_CP031265.1_2144960_2145119_+	NA	NA|31aa|up_7|NZ_CP031265.1_2145555_2145648_+	NA	NA|286aa|up_6|NZ_CP031265.1_2145777_2146635_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP031265.1_2146702_2147485_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP031265.1_2147716_2149522_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP031265.1_2150202_2151741_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP031265.1_2151775_2153908_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP031265.1_2153919_2154354_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP031265.1_2154353_2155460_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP031265.1_2163570_2164926_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP031265.1_2164952_2165885_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP031265.1_2165886_2166696_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP031265.1_2166884_2167793_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP031265.1_2173987_2175052_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP031265.1_2175199_2176642_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP031265.1_2176964_2177438_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP031265.1_2177536_2178880_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP031265.1_2179056_2179740_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP031265.1_2179758_2180946_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	8	2255268-2255353	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	1	2255298-2255323	NZ_CP031265.1_1134959-1134934	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP031265.1_2245839_2246004_+,NA|106aa|up_8|NZ_CP031265.1_2246248_2246566_+,NA|84aa|up_5|NZ_CP031265.1_2251687_2251939_+,NA|57aa|up_0|NZ_CP031265.1_2255078_2255249_+,NA	NA|55aa|up_9|NZ_CP031265.1_2245839_2246004_+	NA	NA|106aa|up_8|NZ_CP031265.1_2246248_2246566_+	NA	NA|1056aa|up_7|NZ_CP031265.1_2246749_2249917_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP031265.1_2250033_2251299_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP031265.1_2251687_2251939_+	NA	NA|255aa|up_4|NZ_CP031265.1_2251930_2252695_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP031265.1_2252856_2253297_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP031265.1_2253289_2254501_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP031265.1_2254602_2254953_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP031265.1_2255078_2255249_+	NA	NA|341aa|down_0|NZ_CP031265.1_2255530_2256553_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP031265.1_2256572_2257172_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP031265.1_2257178_2257412_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP031265.1_2257417_2257864_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP031265.1_2257877_2258363_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP031265.1_2258359_2259619_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP031265.1_2259681_2260176_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP031265.1_2260177_2260684_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP031265.1_2260714_2261719_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP031265.1_2261888_2262494_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	9	2422343-2422421	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCATTGTCTCTAGAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_2|NZ_CP031265.1_2418124_2418292_-,NA|36aa|down_0|NZ_CP031265.1_2422727_2422835_-	NA|326aa|up_9|NZ_CP031265.1_2411735_2412713_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|up_8|NZ_CP031265.1_2412764_2413232_-	pfam06177, QueT, QueT transporter	NA|231aa|up_7|NZ_CP031265.1_2413242_2413935_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|up_6|NZ_CP031265.1_2413945_2415061_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|up_5|NZ_CP031265.1_2415038_2416046_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|up_4|NZ_CP031265.1_2416047_2417406_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|229aa|up_3|NZ_CP031265.1_2417383_2418070_-	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|56aa|up_2|NZ_CP031265.1_2418124_2418292_-	NA	NA|578aa|up_1|NZ_CP031265.1_2418522_2420256_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|588aa|up_0|NZ_CP031265.1_2420280_2422044_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|36aa|down_0|NZ_CP031265.1_2422727_2422835_-	NA	NA|129aa|down_1|NZ_CP031265.1_2422968_2423355_-	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|381aa|down_2|NZ_CP031265.1_2423612_2424755_+	TIGR00045, Glycerate_kinase, glycerate kinase	NA|220aa|down_3|NZ_CP031265.1_2424814_2425474_+	PHA02562, 46, endonuclease subunit; Provisional	NA|404aa|down_4|NZ_CP031265.1_2425655_2426867_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|158aa|down_5|NZ_CP031265.1_2426989_2427463_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|219aa|down_6|NZ_CP031265.1_2427575_2428232_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|269aa|down_7|NZ_CP031265.1_2428294_2429101_-	TIGR03729, acc_ester, putative phosphoesterase	NA|470aa|down_8|NZ_CP031265.1_2429386_2430796_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|693aa|down_9|NZ_CP031265.1_2430933_2433012_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
GCF_007813675.1_ASM781367v1	NZ_CP031265	Staphylococcus aureus strain 13 chromosome, complete genome	10	2560611-2560718	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_4|NZ_CP031265.1_2554751_2554919_-,NA|64aa|up_1|NZ_CP031265.1_2557602_2557794_+,NA|163aa|down_7|NZ_CP031265.1_2568727_2569216_-	NA|57aa|up_9|NZ_CP031265.1_2548861_2549032_-	pfam12669, P12, Virus attachment protein p12 family	NA|665aa|up_8|NZ_CP031265.1_2549044_2551039_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|up_7|NZ_CP031265.1_2551050_2551278_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|823aa|up_6|NZ_CP031265.1_2551493_2553962_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|183aa|up_5|NZ_CP031265.1_2554127_2554676_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|56aa|up_4|NZ_CP031265.1_2554751_2554919_-	NA	NA|515aa|up_3|NZ_CP031265.1_2555030_2556575_-	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|200aa|up_2|NZ_CP031265.1_2556764_2557364_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|64aa|up_1|NZ_CP031265.1_2557602_2557794_+	NA	NA|803aa|up_0|NZ_CP031265.1_2558033_2560442_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|69aa|down_0|NZ_CP031265.1_2560790_2560997_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|333aa|down_1|NZ_CP031265.1_2561086_2562085_-	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|385aa|down_2|NZ_CP031265.1_2562107_2563262_-	PRK08068, PRK08068, transaminase; Reviewed	NA|503aa|down_3|NZ_CP031265.1_2563688_2565197_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|288aa|down_4|NZ_CP031265.1_2565208_2566072_-	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|376aa|down_5|NZ_CP031265.1_2566108_2567236_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|498aa|down_6|NZ_CP031265.1_2567241_2568735_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|163aa|down_7|NZ_CP031265.1_2568727_2569216_-	NA	NA|256aa|down_8|NZ_CP031265.1_2569390_2570158_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|down_9|NZ_CP031265.1_2570518_2572330_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]
