assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	1	210162-210242	1	CRISPRCasFinder	no	csa3	csa3,RT,WYL,cas3,DEDDh,DinG	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|77aa|up_5|NZ_CP042157.1_205036_205267_-,NA|364aa|up_0|NZ_CP042157.1_209053_210145_+,NA|35aa|down_0|NZ_CP042157.1_210577_210682_-,NA|61aa|down_1|NZ_CP042157.1_211114_211297_-,NA|53aa|down_2|NZ_CP042157.1_211361_211520_+,NA|31aa|down_3|NZ_CP042157.1_211956_212049_+	NA|237aa|up_9|NZ_CP042157.1_200647_201358_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP042157.1_201478_201922_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP042157.1_202121_202535_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP042157.1_202991_204365_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP042157.1_205036_205267_-	NA	NA|313aa|up_4|NZ_CP042157.1_205297_206236_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP042157.1_206671_207337_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP042157.1_207488_207809_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP042157.1_207810_208788_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP042157.1_209053_210145_+	NA	NA|35aa|down_0|NZ_CP042157.1_210577_210682_-	NA	NA|61aa|down_1|NZ_CP042157.1_211114_211297_-	NA	NA|53aa|down_2|NZ_CP042157.1_211361_211520_+	NA	NA|31aa|down_3|NZ_CP042157.1_211956_212049_+	NA	NA|286aa|down_4|NZ_CP042157.1_212177_213035_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP042157.1_213102_213885_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NZ_CP042157.1_214116_215922_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NZ_CP042157.1_216602_218141_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NZ_CP042157.1_218175_220308_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NZ_CP042157.1_220319_220754_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	2	222483-222568	2	CRISPRCasFinder	no	csa3	csa3,RT,WYL,cas3,DEDDh,DinG	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|61aa|up_9|NZ_CP042157.1_211114_211297_-,NA|53aa|up_8|NZ_CP042157.1_211361_211520_+,NA|31aa|up_7|NZ_CP042157.1_211956_212049_+,NA	NA|61aa|up_9|NZ_CP042157.1_211114_211297_-	NA	NA|53aa|up_8|NZ_CP042157.1_211361_211520_+	NA	NA|31aa|up_7|NZ_CP042157.1_211956_212049_+	NA	NA|286aa|up_6|NZ_CP042157.1_212177_213035_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP042157.1_213102_213885_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP042157.1_214116_215922_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP042157.1_216602_218141_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP042157.1_218175_220308_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP042157.1_220319_220754_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP042157.1_220753_221860_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP042157.1_229901_231257_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP042157.1_231283_232216_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP042157.1_232217_233027_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_3|NZ_CP042157.1_233215_234121_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP042157.1_240405_241470_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP042157.1_241617_243060_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP042157.1_243382_243856_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP042157.1_243954_245298_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP042157.1_245474_246158_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP042157.1_246176_247364_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	3	330567-330647	3	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622|330592-330622	NZ_CP042157.1_1632306-1632336|NZ_CP042157.1_1632362-1632392|NZ_CP042157.1_319791-319821|NZ_CP042157.1_495617-495647|NZ_CP042157.1_861982-862012|NZ_CP042157.1_1632418-1632448|NZ_CP042157.1_1668889-1668919|NZ_CP042157.1_1894633-1894663|NZ_CP042157.1_2294849-2294879|NZ_CP042157.1_2814946-2814976|NZ_CP042157.1_1175640-1175610|NZ_CP042157.1_1455002-1454972|NZ_CP042157.1_1998830-1998800|NZ_CP042157.1_2204925-2204895|NZ_CP042157.1_2490874-2490844	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|55aa|up_8|NZ_CP042157.1_321100_321265_+,NA|106aa|up_7|NZ_CP042157.1_321509_321827_+,NA|84aa|up_5|NZ_CP042157.1_326948_327200_+,NA|62aa|up_0|NZ_CP042157.1_330339_330525_+,NA	NA|303aa|up_9|NZ_CP042157.1_320059_320968_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|NZ_CP042157.1_321100_321265_+	NA	NA|106aa|up_7|NZ_CP042157.1_321509_321827_+	NA	NA|422aa|up_6|NZ_CP042157.1_325294_326560_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP042157.1_326948_327200_+	NA	NA|255aa|up_4|NZ_CP042157.1_327191_327956_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP042157.1_328117_328558_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP042157.1_328550_329762_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP042157.1_329863_330214_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP042157.1_330339_330525_+	NA	NA|341aa|down_0|NZ_CP042157.1_330790_331813_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP042157.1_331832_332432_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP042157.1_332438_332672_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP042157.1_332677_333124_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP042157.1_333137_333623_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP042157.1_333619_334879_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP042157.1_334941_335436_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP042157.1_335437_335944_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP042157.1_335974_336979_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP042157.1_337148_337754_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	4	1231518-1231619	4	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|70aa|up_9|NZ_CP042157.1_1223077_1223287_-,NA|128aa|up_7|NZ_CP042157.1_1224111_1224495_-,NA|33aa|up_1|NZ_CP042157.1_1230742_1230841_+,NA|86aa|up_0|NZ_CP042157.1_1231051_1231309_-,NA|221aa|down_1|NZ_CP042157.1_1232709_1233372_-,NA|179aa|down_7|NZ_CP042157.1_1239463_1240000_-	NA|70aa|up_9|NZ_CP042157.1_1223077_1223287_-	NA	NA|194aa|up_8|NZ_CP042157.1_1223464_1224046_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP042157.1_1224111_1224495_-	NA	NA|209aa|up_6|NZ_CP042157.1_1224764_1225391_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NZ_CP042157.1_1225834_1227358_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP042157.1_1227373_1227943_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP042157.1_1228434_1229190_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP042157.1_1229269_1230658_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NZ_CP042157.1_1230742_1230841_+	NA	NA|86aa|up_0|NZ_CP042157.1_1231051_1231309_-	NA	NA|319aa|down_0|NZ_CP042157.1_1231635_1232592_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP042157.1_1232709_1233372_-	NA	NA|136aa|down_2|NZ_CP042157.1_1233514_1233922_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP042157.1_1234434_1235013_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP042157.1_1235012_1236281_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP042157.1_1236318_1237785_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP042157.1_1237809_1239351_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP042157.1_1239463_1240000_-	NA	NA|235aa|down_8|NZ_CP042157.1_1240391_1241096_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP042157.1_1241494_1241767_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	5	1578731-1578813	5	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|69aa|up_9|NZ_CP042157.1_1565344_1565551_+,NA|56aa|down_0|NZ_CP042157.1_1579024_1579192_+,NA|34aa|down_2|NZ_CP042157.1_1580468_1580570_+,NA|89aa|down_6|NZ_CP042157.1_1584266_1584533_+	NA|69aa|up_9|NZ_CP042157.1_1565344_1565551_+	NA	NA|237aa|up_8|NZ_CP042157.1_1565638_1566349_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP042157.1_1566332_1567337_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP042157.1_1567810_1569751_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP042157.1_1570020_1571904_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP042157.1_1571915_1573697_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP042157.1_1573918_1574896_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP042157.1_1574888_1576403_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP042157.1_1576642_1577701_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP042157.1_1578039_1578582_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|56aa|down_0|NZ_CP042157.1_1579024_1579192_+	NA	NA|306aa|down_1|NZ_CP042157.1_1579460_1580378_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_2|NZ_CP042157.1_1580468_1580570_+	NA	NA|502aa|down_3|NZ_CP042157.1_1580647_1582153_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_4|NZ_CP042157.1_1582495_1582996_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|NZ_CP042157.1_1583015_1583882_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|NZ_CP042157.1_1584266_1584533_+	NA	NA|133aa|down_7|NZ_CP042157.1_1584682_1585081_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|NZ_CP042157.1_1585043_1587149_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|NZ_CP042157.1_1587266_1588238_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	6	1619680-1619758	6	CRISPRCasFinder	no	cas3	csa3,RT,WYL,cas3,DEDDh,DinG	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	1619704-1619734|1619704-1619734|1619704-1619734	NZ_CP042157.1_1099265-1099235|NZ_CP042157.1_1099210-1099180|NZ_CP042157.1_2510532-2510562	NA	1	1	Unclear	csa3,RT,WYL,cas3,DEDDh,DinG	NA|35aa|up_7|NZ_CP042157.1_1610556_1610661_+,NA|36aa|up_5|NZ_CP042157.1_1612093_1612201_+,NA	NA|191aa|up_9|NZ_CP042157.1_1606997_1607570_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP042157.1_1607983_1610515_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP042157.1_1610556_1610661_+	NA	NA|370aa|up_6|NZ_CP042157.1_1610829_1611940_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP042157.1_1612093_1612201_+	NA	NA|280aa|up_4|NZ_CP042157.1_1612348_1613188_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP042157.1_1613361_1614012_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP042157.1_1614008_1614245_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP042157.1_1614513_1616499_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP042157.1_1616506_1619353_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP042157.1_1620016_1620949_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP042157.1_1620954_1621794_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP042157.1_1621801_1622287_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP042157.1_1622294_1623734_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP042157.1_1623800_1624736_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP042157.1_1625504_1626416_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP042157.1_1626412_1627408_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP042157.1_1627518_1628463_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP042157.1_1629026_1629614_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP042157.1_1629856_1630759_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	7	1625138-1625228	7	CRISPRCasFinder	no	cas3	csa3,RT,WYL,cas3,DEDDh,DinG	Unclear	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	15	1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195|1625171-1625195	NZ_CP042157.1_975987-975963|NZ_CP042157.1_976045-976021|NZ_CP042157.1_1099181-1099157|NZ_CP042157.1_1099291-1099267|NZ_CP042157.1_1454938-1454914|NZ_CP042157.1_2204861-2204837|NZ_CP042157.1_2490811-2490787|NZ_CP042157.1_1577772-1577796|NZ_CP042157.1_1668626-1668650|NZ_CP042157.1_2476256-2476280|NZ_CP042157.1_2816294-2816318|NZ_CP042157.1_1099236-1099212|NZ_CP042157.1_1797116-1797140|NZ_CP042157.1_2510506-2510530|NZ_CP042157.1_2510620-2510644	NA	1	1	Unclear	csa3,RT,WYL,cas3,DEDDh,DinG	NA,NA	NA|280aa|up_9|NZ_CP042157.1_1612348_1613188_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP042157.1_1613361_1614012_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP042157.1_1614008_1614245_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP042157.1_1614513_1616499_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP042157.1_1616506_1619353_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP042157.1_1620016_1620949_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP042157.1_1620954_1621794_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP042157.1_1621801_1622287_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP042157.1_1622294_1623734_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP042157.1_1623800_1624736_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP042157.1_1625504_1626416_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP042157.1_1626412_1627408_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP042157.1_1627518_1628463_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP042157.1_1629026_1629614_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP042157.1_1629856_1630759_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP042157.1_1631461_1632091_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP042157.1_1632903_1633917_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP042157.1_1633969_1634980_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP042157.1_1635118_1636309_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP042157.1_1636430_1637192_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	8	1668553-1668634	8	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	1668577-1668610	NZ_CP042157.1_2204969-2204936	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|38aa|up_1|NZ_CP042157.1_1667455_1667569_+,NA	NA|206aa|up_9|NZ_CP042157.1_1662309_1662927_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP042157.1_1663081_1663576_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP042157.1_1663974_1664397_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP042157.1_1664544_1665261_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP042157.1_1665343_1665883_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP042157.1_1666033_1666354_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP042157.1_1666497_1666854_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP042157.1_1667011_1667392_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP042157.1_1667455_1667569_+	NA	NA|293aa|up_0|NZ_CP042157.1_1667570_1668449_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP042157.1_1669245_1669632_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP042157.1_1669624_1669921_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP042157.1_1670170_1671196_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP042157.1_1671188_1671884_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP042157.1_1671901_1672723_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP042157.1_1672866_1674087_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|NZ_CP042157.1_1674100_1675489_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|NZ_CP042157.1_1675515_1676088_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|NZ_CP042157.1_1676259_1676481_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|NZ_CP042157.1_1676481_1676754_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	9	1993295-1993452	1	PILER-CR	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGAAAAGTCAGC	45	0	0	NA	NA	NA	2	2	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA|56aa|up_5|NZ_CP042157.1_1988924_1989092_+,NA|169aa|up_2|NZ_CP042157.1_1991054_1991561_+,NA|62aa|down_0|NZ_CP042157.1_1993639_1993825_-,NA|83aa|down_1|NZ_CP042157.1_1994034_1994283_-,NA|78aa|down_2|NZ_CP042157.1_1994446_1994680_-,NA|49aa|down_5|NZ_CP042157.1_1998308_1998455_+,NA|75aa|down_6|NZ_CP042157.1_1998411_1998636_+	NA|272aa|up_9|NZ_CP042157.1_1985850_1986666_+	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|267aa|up_8|NZ_CP042157.1_1986901_1987702_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_7|NZ_CP042157.1_1987713_1988301_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_6|NZ_CP042157.1_1988293_1988797_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_5|NZ_CP042157.1_1988924_1989092_+	NA	NA|110aa|up_4|NZ_CP042157.1_1989285_1989615_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_3|NZ_CP042157.1_1989983_1990385_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NZ_CP042157.1_1991054_1991561_+	NA	NA|166aa|up_1|NZ_CP042157.1_1991820_1992318_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NZ_CP042157.1_1992467_1992818_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NZ_CP042157.1_1993639_1993825_-	NA	NA|83aa|down_1|NZ_CP042157.1_1994034_1994283_-	NA	NA|78aa|down_2|NZ_CP042157.1_1994446_1994680_-	NA	NA|440aa|down_3|NZ_CP042157.1_1995198_1996518_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|320aa|down_4|NZ_CP042157.1_1996676_1997636_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_5|NZ_CP042157.1_1998308_1998455_+	NA	NA|75aa|down_6|NZ_CP042157.1_1998411_1998636_+	NA	NA|239aa|down_7|NZ_CP042157.1_1999125_1999842_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_8|NZ_CP042157.1_1999949_2000675_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_9|NZ_CP042157.1_2000769_2001495_-	PRK13043, PRK13043, superantigen-like protein; Reviewed
GCF_007726565.1_ASM772656v1	NZ_CP042157	Staphylococcus aureus strain B3-17D chromosome, complete genome	10	2476180-2476264	9	CRISPRCasFinder	no		csa3,RT,WYL,cas3,DEDDh,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	2476206-2476238|2476206-2476238	NZ_CP042157.1_976095-976063|NZ_CP042157.1_2204969-2204937	NA	1	1	Orphan	csa3,RT,WYL,cas3,DEDDh,DinG	NA,NA	NA|228aa|up_9|NZ_CP042157.1_2465389_2466073_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP042157.1_2466316_2466493_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP042157.1_2466785_2468132_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP042157.1_2468138_2468891_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP042157.1_2468892_2469831_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP042157.1_2469834_2470974_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP042157.1_2471109_2472942_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP042157.1_2473010_2473637_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP042157.1_2473668_2474646_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP042157.1_2474746_2475871_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP042157.1_2476436_2478260_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP042157.1_2478605_2478857_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP042157.1_2478901_2479876_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP042157.1_2479932_2482080_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP042157.1_2482138_2482600_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP042157.1_2482691_2483378_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP042157.1_2483417_2484134_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP042157.1_2484136_2484490_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP042157.1_2484490_2485075_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP042157.1_2485064_2485634_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
