assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007726545.1_ASM772654v1	NZ_CP042107	Staphylococcus aureus strain B8-13D chromosome, complete genome	1	92257-92337	1	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312|92282-92312	NZ_CP042107.1_1361869-1361899|NZ_CP042107.1_1361925-1361955|NZ_CP042107.1_81481-81511|NZ_CP042107.1_257307-257337|NZ_CP042107.1_609178-609208|NZ_CP042107.1_1361981-1362011|NZ_CP042107.1_1398236-1398266|NZ_CP042107.1_1623434-1623464|NZ_CP042107.1_2023653-2023683|NZ_CP042107.1_2543745-2543775|NZ_CP042107.1_922830-922800|NZ_CP042107.1_1184565-1184535|NZ_CP042107.1_1727631-1727601|NZ_CP042107.1_1933729-1933699|NZ_CP042107.1_2219678-2219648	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_8|NZ_CP042107.1_82790_82955_+,NA|106aa|up_7|NZ_CP042107.1_83199_83517_+,NA|84aa|up_5|NZ_CP042107.1_88638_88890_+,NA|62aa|up_0|NZ_CP042107.1_92029_92215_+,NA	NA|303aa|up_9|NZ_CP042107.1_81749_82658_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|NZ_CP042107.1_82790_82955_+	NA	NA|106aa|up_7|NZ_CP042107.1_83199_83517_+	NA	NA|422aa|up_6|NZ_CP042107.1_86984_88250_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP042107.1_88638_88890_+	NA	NA|255aa|up_4|NZ_CP042107.1_88881_89646_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP042107.1_89807_90248_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP042107.1_90240_91452_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP042107.1_91553_91904_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP042107.1_92029_92215_+	NA	NA|341aa|down_0|NZ_CP042107.1_92480_93503_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP042107.1_93522_94122_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP042107.1_94128_94362_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP042107.1_94367_94814_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP042107.1_94827_95313_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP042107.1_95309_96569_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP042107.1_96631_97126_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP042107.1_97127_97634_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP042107.1_97664_98669_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP042107.1_98838_99444_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_007726545.1_ASM772654v1	NZ_CP042107	Staphylococcus aureus strain B8-13D chromosome, complete genome	2	961538-961639	2	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|70aa|up_9|NZ_CP042107.1_953097_953307_-,NA|128aa|up_7|NZ_CP042107.1_954131_954515_-,NA|33aa|up_1|NZ_CP042107.1_960762_960861_+,NA|86aa|up_0|NZ_CP042107.1_961071_961329_-,NA|221aa|down_1|NZ_CP042107.1_962729_963392_-,NA|179aa|down_7|NZ_CP042107.1_969483_970020_-	NA|70aa|up_9|NZ_CP042107.1_953097_953307_-	NA	NA|194aa|up_8|NZ_CP042107.1_953484_954066_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP042107.1_954131_954515_-	NA	NA|209aa|up_6|NZ_CP042107.1_954784_955411_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NZ_CP042107.1_955854_957378_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP042107.1_957393_957963_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP042107.1_958454_959210_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP042107.1_959289_960678_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NZ_CP042107.1_960762_960861_+	NA	NA|86aa|up_0|NZ_CP042107.1_961071_961329_-	NA	NA|319aa|down_0|NZ_CP042107.1_961655_962612_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP042107.1_962729_963392_-	NA	NA|136aa|down_2|NZ_CP042107.1_963534_963942_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP042107.1_964454_965033_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP042107.1_965032_966301_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP042107.1_966338_967805_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP042107.1_967829_969371_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP042107.1_969483_970020_-	NA	NA|235aa|down_8|NZ_CP042107.1_970411_971116_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP042107.1_971514_971787_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_007726545.1_ASM772654v1	NZ_CP042107	Staphylococcus aureus strain B8-13D chromosome, complete genome	3	1308294-1308376	3	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|69aa|up_9|NZ_CP042107.1_1294907_1295114_+,NA|56aa|down_0|NZ_CP042107.1_1308587_1308755_+,NA|34aa|down_2|NZ_CP042107.1_1310031_1310133_+,NA|89aa|down_6|NZ_CP042107.1_1313829_1314096_+	NA|69aa|up_9|NZ_CP042107.1_1294907_1295114_+	NA	NA|237aa|up_8|NZ_CP042107.1_1295201_1295912_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP042107.1_1295895_1296900_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP042107.1_1297373_1299314_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP042107.1_1299583_1301467_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP042107.1_1301478_1303260_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP042107.1_1303481_1304459_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP042107.1_1304451_1305966_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP042107.1_1306205_1307264_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP042107.1_1307602_1308145_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|56aa|down_0|NZ_CP042107.1_1308587_1308755_+	NA	NA|306aa|down_1|NZ_CP042107.1_1309023_1309941_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_2|NZ_CP042107.1_1310031_1310133_+	NA	NA|502aa|down_3|NZ_CP042107.1_1310210_1311716_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_4|NZ_CP042107.1_1312058_1312559_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|NZ_CP042107.1_1312578_1313445_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|NZ_CP042107.1_1313829_1314096_+	NA	NA|133aa|down_7|NZ_CP042107.1_1314245_1314644_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|NZ_CP042107.1_1314606_1316712_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|NZ_CP042107.1_1316829_1317801_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCF_007726545.1_ASM772654v1	NZ_CP042107	Staphylococcus aureus strain B8-13D chromosome, complete genome	4	1349243-1349321	4	CRISPRCasFinder	no	cas3	RT,WYL,cas3,DEDDh,DinG,csa3	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	1349267-1349297|1349267-1349297|1349267-1349297	NZ_CP042107.1_846458-846428|NZ_CP042107.1_846403-846373|NZ_CP042107.1_2239335-2239365	NA	1	1	Unclear	RT,WYL,cas3,DEDDh,DinG,csa3	NA|35aa|up_7|NZ_CP042107.1_1340119_1340224_+,NA|36aa|up_5|NZ_CP042107.1_1341656_1341764_+,NA	NA|191aa|up_9|NZ_CP042107.1_1336560_1337133_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP042107.1_1337546_1340078_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP042107.1_1340119_1340224_+	NA	NA|370aa|up_6|NZ_CP042107.1_1340392_1341503_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP042107.1_1341656_1341764_+	NA	NA|280aa|up_4|NZ_CP042107.1_1341911_1342751_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP042107.1_1342924_1343575_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP042107.1_1343571_1343808_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP042107.1_1344076_1346062_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP042107.1_1346069_1348916_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP042107.1_1349579_1350512_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP042107.1_1350517_1351357_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP042107.1_1351364_1351850_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP042107.1_1351857_1353297_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP042107.1_1353363_1354299_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP042107.1_1355067_1355979_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP042107.1_1355975_1356971_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP042107.1_1357081_1358026_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP042107.1_1358589_1359177_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP042107.1_1359419_1360322_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_007726545.1_ASM772654v1	NZ_CP042107	Staphylococcus aureus strain B8-13D chromosome, complete genome	5	1354701-1354791	5	CRISPRCasFinder	no	cas3	RT,WYL,cas3,DEDDh,DinG,csa3	Unclear	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	15	1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758|1354734-1354758	NZ_CP042107.1_723182-723158|NZ_CP042107.1_723240-723216|NZ_CP042107.1_846374-846350|NZ_CP042107.1_846484-846460|NZ_CP042107.1_1184501-1184477|NZ_CP042107.1_1933665-1933641|NZ_CP042107.1_2219615-2219591|NZ_CP042107.1_1307335-1307359|NZ_CP042107.1_1397973-1397997|NZ_CP042107.1_2205060-2205084|NZ_CP042107.1_2545093-2545117|NZ_CP042107.1_846429-846405|NZ_CP042107.1_1525917-1525941|NZ_CP042107.1_2239309-2239333|NZ_CP042107.1_2239423-2239447	NA	1	1	Unclear	RT,WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|280aa|up_9|NZ_CP042107.1_1341911_1342751_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP042107.1_1342924_1343575_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP042107.1_1343571_1343808_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP042107.1_1344076_1346062_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP042107.1_1346069_1348916_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP042107.1_1349579_1350512_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP042107.1_1350517_1351357_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP042107.1_1351364_1351850_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP042107.1_1351857_1353297_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP042107.1_1353363_1354299_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP042107.1_1355067_1355979_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP042107.1_1355975_1356971_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP042107.1_1357081_1358026_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP042107.1_1358589_1359177_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP042107.1_1359419_1360322_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP042107.1_1361024_1361654_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP042107.1_1362466_1363480_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP042107.1_1363532_1364543_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP042107.1_1364681_1365872_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP042107.1_1365993_1366755_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_007726545.1_ASM772654v1	NZ_CP042107	Staphylococcus aureus strain B8-13D chromosome, complete genome	6	1397900-1397981	6	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	1397924-1397957	NZ_CP042107.1_1933773-1933740	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|38aa|up_1|NZ_CP042107.1_1396802_1396916_+,NA	NA|206aa|up_9|NZ_CP042107.1_1391656_1392274_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP042107.1_1392428_1392923_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP042107.1_1393321_1393744_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP042107.1_1393891_1394608_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP042107.1_1394690_1395230_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP042107.1_1395380_1395701_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP042107.1_1395844_1396201_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP042107.1_1396358_1396739_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP042107.1_1396802_1396916_+	NA	NA|293aa|up_0|NZ_CP042107.1_1396917_1397796_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP042107.1_1398592_1398979_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP042107.1_1398971_1399268_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP042107.1_1399517_1400543_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP042107.1_1400535_1401231_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP042107.1_1401248_1402070_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP042107.1_1402213_1403434_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|NZ_CP042107.1_1403447_1404836_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|NZ_CP042107.1_1404862_1405435_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|NZ_CP042107.1_1405606_1405828_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|NZ_CP042107.1_1405828_1406101_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_007726545.1_ASM772654v1	NZ_CP042107	Staphylococcus aureus strain B8-13D chromosome, complete genome	7	2204984-2205068	7	CRISPRCasFinder	no		RT,WYL,cas3,DEDDh,DinG,csa3	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	2205010-2205042|2205010-2205042	NZ_CP042107.1_723290-723258|NZ_CP042107.1_1933773-1933741	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|228aa|up_9|NZ_CP042107.1_2194193_2194877_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP042107.1_2195120_2195297_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP042107.1_2195589_2196936_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP042107.1_2196942_2197695_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP042107.1_2197696_2198635_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP042107.1_2198638_2199778_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP042107.1_2199913_2201746_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP042107.1_2201814_2202441_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP042107.1_2202472_2203450_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP042107.1_2203550_2204675_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP042107.1_2205240_2207064_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP042107.1_2207409_2207661_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP042107.1_2207705_2208680_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP042107.1_2208736_2210884_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP042107.1_2210942_2211404_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP042107.1_2211495_2212182_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP042107.1_2212221_2212938_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP042107.1_2212940_2213294_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP042107.1_2213294_2213879_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP042107.1_2213868_2214438_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_007726545.1_ASM772654v1	NZ_CP042107	Staphylococcus aureus strain B8-13D chromosome, complete genome	8	2779196-2779276	8	CRISPRCasFinder	no	csa3	RT,WYL,cas3,DEDDh,DinG,csa3	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|77aa|up_5|NZ_CP042107.1_2774070_2774301_-,NA|364aa|up_0|NZ_CP042107.1_2778087_2779179_+,NA|35aa|down_0|NZ_CP042107.1_2779611_2779716_-,NA|61aa|down_1|NZ_CP042107.1_2780148_2780331_-,NA|53aa|down_2|NZ_CP042107.1_2780395_2780554_+,NA|31aa|down_3|NZ_CP042107.1_2780990_2781083_+	NA|237aa|up_9|NZ_CP042107.1_2769681_2770392_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP042107.1_2770512_2770956_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP042107.1_2771155_2771569_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP042107.1_2772025_2773399_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP042107.1_2774070_2774301_-	NA	NA|313aa|up_4|NZ_CP042107.1_2774331_2775270_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP042107.1_2775705_2776371_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP042107.1_2776522_2776843_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP042107.1_2776844_2777822_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP042107.1_2778087_2779179_+	NA	NA|35aa|down_0|NZ_CP042107.1_2779611_2779716_-	NA	NA|61aa|down_1|NZ_CP042107.1_2780148_2780331_-	NA	NA|53aa|down_2|NZ_CP042107.1_2780395_2780554_+	NA	NA|31aa|down_3|NZ_CP042107.1_2780990_2781083_+	NA	NA|286aa|down_4|NZ_CP042107.1_2781211_2782069_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP042107.1_2782136_2782919_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NZ_CP042107.1_2783150_2784956_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NZ_CP042107.1_2785636_2787175_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NZ_CP042107.1_2787209_2789342_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NZ_CP042107.1_2789353_2789788_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_007726545.1_ASM772654v1	NZ_CP042107	Staphylococcus aureus strain B8-13D chromosome, complete genome	9	2791517-2791602	9	CRISPRCasFinder	no	csa3	RT,WYL,cas3,DEDDh,DinG,csa3	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,cas3,DEDDh,DinG,csa3	NA|61aa|up_9|NZ_CP042107.1_2780148_2780331_-,NA|53aa|up_8|NZ_CP042107.1_2780395_2780554_+,NA|31aa|up_7|NZ_CP042107.1_2780990_2781083_+,NA	NA|61aa|up_9|NZ_CP042107.1_2780148_2780331_-	NA	NA|53aa|up_8|NZ_CP042107.1_2780395_2780554_+	NA	NA|31aa|up_7|NZ_CP042107.1_2780990_2781083_+	NA	NA|286aa|up_6|NZ_CP042107.1_2781211_2782069_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP042107.1_2782136_2782919_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP042107.1_2783150_2784956_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP042107.1_2785636_2787175_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP042107.1_2787209_2789342_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP042107.1_2789353_2789788_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP042107.1_2789787_2790894_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP042107.1_2798935_2800291_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP042107.1_2800317_2801250_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP042107.1_2801251_2802061_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP042107.1_2802249_2803158_-	cd09989, Arginase, Arginase family	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
