assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	1	473400-473501	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NZ_CP042153.1_464959_465169_-,NA|128aa|up_7|NZ_CP042153.1_465993_466377_-,NA|33aa|up_1|NZ_CP042153.1_472624_472723_+,NA|86aa|up_0|NZ_CP042153.1_472933_473191_-,NA|221aa|down_1|NZ_CP042153.1_474591_475254_-,NA|179aa|down_7|NZ_CP042153.1_481345_481882_-	NA|70aa|up_9|NZ_CP042153.1_464959_465169_-	NA	NA|194aa|up_8|NZ_CP042153.1_465346_465928_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP042153.1_465993_466377_-	NA	NA|209aa|up_6|NZ_CP042153.1_466646_467273_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NZ_CP042153.1_467716_469240_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP042153.1_469255_469825_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP042153.1_470316_471072_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP042153.1_471151_472540_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NZ_CP042153.1_472624_472723_+	NA	NA|86aa|up_0|NZ_CP042153.1_472933_473191_-	NA	NA|319aa|down_0|NZ_CP042153.1_473517_474474_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP042153.1_474591_475254_-	NA	NA|136aa|down_2|NZ_CP042153.1_475396_475804_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP042153.1_476316_476895_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP042153.1_476894_478163_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP042153.1_478200_479667_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP042153.1_479691_481233_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP042153.1_481345_481882_-	NA	NA|235aa|down_8|NZ_CP042153.1_482273_482978_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP042153.1_483376_483649_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2	597459-597589	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTA	37	1	1	597496-597552	NZ_CP042153.1_1972394-1972338	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|31aa|up_1|NZ_CP042153.1_592608_592701_+,NA	NA|432aa|up_9|NZ_CP042153.1_583970_585266_+	pfam01171, ATP_bind_3, PP-loop family	NA|180aa|up_8|NZ_CP042153.1_585270_585810_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|698aa|up_7|NZ_CP042153.1_586066_588160_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|294aa|up_6|NZ_CP042153.1_588387_589269_+	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|311aa|up_5|NZ_CP042153.1_589447_590380_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|268aa|up_4|NZ_CP042153.1_590595_591399_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|122aa|up_3|NZ_CP042153.1_591376_591742_+	cd00534, DHNA_DHNTPE, Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively	NA|159aa|up_2|NZ_CP042153.1_591738_592215_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|31aa|up_1|NZ_CP042153.1_592608_592701_+	NA	NA|496aa|up_0|NZ_CP042153.1_592753_594241_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|461aa|down_0|NZ_CP042153.1_601385_602768_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|296aa|down_1|NZ_CP042153.1_602871_603759_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|187aa|down_2|NZ_CP042153.1_603762_604323_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|405aa|down_3|NZ_CP042153.1_604530_605745_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|154aa|down_4|NZ_CP042153.1_605902_606364_+	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|189aa|down_5|NZ_CP042153.1_606382_606949_+	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|336aa|down_6|NZ_CP042153.1_606938_607946_+	COG3869, COG3869, Arginine kinase [Amino acid transport and metabolism]	NA|819aa|down_7|NZ_CP042153.1_607959_610416_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|455aa|down_8|NZ_CP042153.1_610900_612265_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|352aa|down_9|NZ_CP042153.1_612307_613363_+	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	3	820601-820683	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NZ_CP042153.1_807214_807421_+,NA|56aa|down_0|NZ_CP042153.1_820894_821062_+,NA|34aa|down_2|NZ_CP042153.1_822338_822440_+,NA|89aa|down_6|NZ_CP042153.1_826136_826403_+	NA|69aa|up_9|NZ_CP042153.1_807214_807421_+	NA	NA|237aa|up_8|NZ_CP042153.1_807508_808219_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP042153.1_808202_809207_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP042153.1_809680_811621_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP042153.1_811890_813774_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP042153.1_813785_815567_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP042153.1_815788_816766_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP042153.1_816758_818273_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP042153.1_818512_819571_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP042153.1_819909_820452_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|56aa|down_0|NZ_CP042153.1_820894_821062_+	NA	NA|306aa|down_1|NZ_CP042153.1_821330_822248_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_2|NZ_CP042153.1_822338_822440_+	NA	NA|502aa|down_3|NZ_CP042153.1_822517_824023_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_4|NZ_CP042153.1_824365_824866_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|NZ_CP042153.1_824885_825752_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|NZ_CP042153.1_826136_826403_+	NA	NA|133aa|down_7|NZ_CP042153.1_826552_826951_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|NZ_CP042153.1_826913_829019_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|NZ_CP042153.1_829136_830108_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	4	861550-861628	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	861574-861604|861574-861604|861574-861604	NZ_CP042153.1_341151-341121|NZ_CP042153.1_341096-341066|NZ_CP042153.1_1709926-1709956	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP042153.1_852426_852531_+,NA|36aa|up_5|NZ_CP042153.1_853963_854071_+,NA	NA|191aa|up_9|NZ_CP042153.1_848867_849440_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP042153.1_849853_852385_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP042153.1_852426_852531_+	NA	NA|370aa|up_6|NZ_CP042153.1_852699_853810_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP042153.1_853963_854071_+	NA	NA|280aa|up_4|NZ_CP042153.1_854218_855058_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP042153.1_855231_855882_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP042153.1_855878_856115_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP042153.1_856383_858369_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP042153.1_858376_861223_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP042153.1_861886_862819_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP042153.1_862824_863664_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP042153.1_863671_864157_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP042153.1_864164_865604_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP042153.1_865670_866606_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP042153.1_867374_868286_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP042153.1_868282_869278_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP042153.1_869388_870333_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP042153.1_870896_871484_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP042153.1_871726_872629_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	5	867008-867098	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	15	867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065|867041-867065	NZ_CP042153.1_218115-218091|NZ_CP042153.1_218173-218149|NZ_CP042153.1_341067-341043|NZ_CP042153.1_341177-341153|NZ_CP042153.1_696808-696784|NZ_CP042153.1_1404255-1404231|NZ_CP042153.1_1690205-1690181|NZ_CP042153.1_819642-819666|NZ_CP042153.1_910496-910520|NZ_CP042153.1_1675650-1675674|NZ_CP042153.1_2015681-2015705|NZ_CP042153.1_341122-341098|NZ_CP042153.1_994768-994792|NZ_CP042153.1_1709900-1709924|NZ_CP042153.1_1710014-1710038	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP042153.1_854218_855058_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP042153.1_855231_855882_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP042153.1_855878_856115_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP042153.1_856383_858369_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP042153.1_858376_861223_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP042153.1_861886_862819_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP042153.1_862824_863664_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP042153.1_863671_864157_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP042153.1_864164_865604_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP042153.1_865670_866606_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP042153.1_867374_868286_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP042153.1_868282_869278_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP042153.1_869388_870333_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP042153.1_870896_871484_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP042153.1_871726_872629_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP042153.1_873331_873961_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP042153.1_874773_875787_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP042153.1_875839_876850_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP042153.1_876988_878179_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP042153.1_878300_879062_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	6	910423-910504	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	910447-910480	NZ_CP042153.1_1404363-1404330	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|62aa|up_8|NZ_CP042153.1_905642_905828_+,NA|38aa|up_1|NZ_CP042153.1_909325_909439_+,NA	NA|165aa|up_9|NZ_CP042153.1_904951_905446_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|62aa|up_8|NZ_CP042153.1_905642_905828_+	NA	NA|141aa|up_7|NZ_CP042153.1_905844_906267_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP042153.1_906414_907131_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP042153.1_907213_907753_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP042153.1_907903_908224_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP042153.1_908367_908724_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP042153.1_908881_909262_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP042153.1_909325_909439_+	NA	NA|293aa|up_0|NZ_CP042153.1_909440_910319_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP042153.1_911115_911502_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP042153.1_911494_911791_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP042153.1_912040_913066_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP042153.1_913058_913754_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP042153.1_913771_914593_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP042153.1_914736_915957_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|NZ_CP042153.1_915970_917359_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|NZ_CP042153.1_917385_917958_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|NZ_CP042153.1_918129_918351_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|NZ_CP042153.1_918351_918624_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	7	1192689-1192846	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGAAAAGTCAGC	45	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|56aa|up_6|NZ_CP042153.1_1188092_1188260_+,NA|169aa|up_3|NZ_CP042153.1_1190222_1190729_+,NA|66aa|up_0|NZ_CP042153.1_1192412_1192610_+,NA|62aa|down_0|NZ_CP042153.1_1193033_1193219_-,NA|83aa|down_1|NZ_CP042153.1_1193428_1193677_-,NA|78aa|down_2|NZ_CP042153.1_1193840_1194074_-,NA|49aa|down_5|NZ_CP042153.1_1197702_1197849_+,NA|75aa|down_6|NZ_CP042153.1_1197805_1198030_+	NA|267aa|up_9|NZ_CP042153.1_1186069_1186870_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_8|NZ_CP042153.1_1186881_1187469_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_7|NZ_CP042153.1_1187461_1187965_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_6|NZ_CP042153.1_1188092_1188260_+	NA	NA|110aa|up_5|NZ_CP042153.1_1188453_1188783_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_4|NZ_CP042153.1_1189151_1189553_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_3|NZ_CP042153.1_1190222_1190729_+	NA	NA|166aa|up_2|NZ_CP042153.1_1190988_1191486_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_1|NZ_CP042153.1_1191635_1191986_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|66aa|up_0|NZ_CP042153.1_1192412_1192610_+	NA	NA|62aa|down_0|NZ_CP042153.1_1193033_1193219_-	NA	NA|83aa|down_1|NZ_CP042153.1_1193428_1193677_-	NA	NA|78aa|down_2|NZ_CP042153.1_1193840_1194074_-	NA	NA|440aa|down_3|NZ_CP042153.1_1194592_1195912_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|320aa|down_4|NZ_CP042153.1_1196070_1197030_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_5|NZ_CP042153.1_1197702_1197849_+	NA	NA|75aa|down_6|NZ_CP042153.1_1197805_1198030_+	NA	NA|239aa|down_7|NZ_CP042153.1_1198519_1199236_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_8|NZ_CP042153.1_1199343_1200069_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_9|NZ_CP042153.1_1200163_1200889_-	PRK13043, PRK13043, superantigen-like protein; Reviewed
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	8	1675574-1675658	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1675600-1675632|1675600-1675632	NZ_CP042153.1_218223-218191|NZ_CP042153.1_1404363-1404331	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP042153.1_1664783_1665467_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP042153.1_1665710_1665887_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP042153.1_1666179_1667526_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP042153.1_1667532_1668285_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP042153.1_1668286_1669225_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP042153.1_1669228_1670368_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP042153.1_1670503_1672336_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP042153.1_1672404_1673031_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP042153.1_1673062_1674040_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP042153.1_1674140_1675265_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP042153.1_1675830_1677654_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP042153.1_1677999_1678251_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP042153.1_1678295_1679270_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP042153.1_1679326_1681474_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP042153.1_1681532_1681994_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP042153.1_1682085_1682772_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP042153.1_1682811_1683528_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP042153.1_1683530_1683884_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP042153.1_1683884_1684469_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP042153.1_1684458_1685028_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	9	2251074-2251154	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP042153.1_2245948_2246179_-,NA|364aa|up_0|NZ_CP042153.1_2249965_2251057_+,NA|35aa|down_0|NZ_CP042153.1_2251489_2251594_-,NA|61aa|down_1|NZ_CP042153.1_2252026_2252209_-,NA|53aa|down_2|NZ_CP042153.1_2252273_2252432_+,NA|31aa|down_3|NZ_CP042153.1_2252868_2252961_+	NA|237aa|up_9|NZ_CP042153.1_2241559_2242270_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP042153.1_2242390_2242834_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP042153.1_2243033_2243447_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP042153.1_2243903_2245277_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP042153.1_2245948_2246179_-	NA	NA|313aa|up_4|NZ_CP042153.1_2246209_2247148_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP042153.1_2247583_2248249_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP042153.1_2248400_2248721_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP042153.1_2248722_2249700_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP042153.1_2249965_2251057_+	NA	NA|35aa|down_0|NZ_CP042153.1_2251489_2251594_-	NA	NA|61aa|down_1|NZ_CP042153.1_2252026_2252209_-	NA	NA|53aa|down_2|NZ_CP042153.1_2252273_2252432_+	NA	NA|31aa|down_3|NZ_CP042153.1_2252868_2252961_+	NA	NA|286aa|down_4|NZ_CP042153.1_2253089_2253947_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP042153.1_2254014_2254797_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NZ_CP042153.1_2255028_2256834_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NZ_CP042153.1_2257514_2259053_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NZ_CP042153.1_2259087_2261220_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NZ_CP042153.1_2261231_2261666_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	10	2263395-2263480	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|61aa|up_9|NZ_CP042153.1_2252026_2252209_-,NA|53aa|up_8|NZ_CP042153.1_2252273_2252432_+,NA|31aa|up_7|NZ_CP042153.1_2252868_2252961_+,NA	NA|61aa|up_9|NZ_CP042153.1_2252026_2252209_-	NA	NA|53aa|up_8|NZ_CP042153.1_2252273_2252432_+	NA	NA|31aa|up_7|NZ_CP042153.1_2252868_2252961_+	NA	NA|286aa|up_6|NZ_CP042153.1_2253089_2253947_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP042153.1_2254014_2254797_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP042153.1_2255028_2256834_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP042153.1_2257514_2259053_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP042153.1_2259087_2261220_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP042153.1_2261231_2261666_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP042153.1_2261665_2262772_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP042153.1_2270813_2272169_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP042153.1_2272195_2273128_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP042153.1_2273129_2273939_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_3|NZ_CP042153.1_2274127_2275033_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP042153.1_2281317_2282382_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP042153.1_2282529_2283972_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP042153.1_2284294_2284768_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP042153.1_2284866_2286210_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP042153.1_2286386_2287070_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP042153.1_2287088_2288276_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_007726525.1_ASM772652v1	NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	11	2371479-2371559	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534|2371504-2371534	NZ_CP042153.1_874176-874206|NZ_CP042153.1_874232-874262|NZ_CP042153.1_122111-122141|NZ_CP042153.1_874288-874318|NZ_CP042153.1_910759-910789|NZ_CP042153.1_1092284-1092314|NZ_CP042153.1_1494243-1494273|NZ_CP042153.1_2014333-2014363|NZ_CP042153.1_2360703-2360733|NZ_CP042153.1_2536529-2536559|NZ_CP042153.1_417523-417493|NZ_CP042153.1_696872-696842|NZ_CP042153.1_1198224-1198194|NZ_CP042153.1_1404319-1404289|NZ_CP042153.1_1690268-1690238	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_8|NZ_CP042153.1_2362012_2362177_+,NA|106aa|up_7|NZ_CP042153.1_2362421_2362739_+,NA|84aa|up_5|NZ_CP042153.1_2367860_2368112_+,NA|62aa|up_0|NZ_CP042153.1_2371251_2371437_+,NA	NA|303aa|up_9|NZ_CP042153.1_2360971_2361880_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|NZ_CP042153.1_2362012_2362177_+	NA	NA|106aa|up_7|NZ_CP042153.1_2362421_2362739_+	NA	NA|422aa|up_6|NZ_CP042153.1_2366206_2367472_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP042153.1_2367860_2368112_+	NA	NA|255aa|up_4|NZ_CP042153.1_2368103_2368868_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP042153.1_2369029_2369470_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP042153.1_2369462_2370674_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP042153.1_2370775_2371126_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP042153.1_2371251_2371437_+	NA	NA|341aa|down_0|NZ_CP042153.1_2371702_2372725_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP042153.1_2372744_2373344_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP042153.1_2373350_2373584_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP042153.1_2373589_2374036_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP042153.1_2374049_2374535_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP042153.1_2374531_2375791_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP042153.1_2375853_2376348_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP042153.1_2376349_2376856_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP042153.1_2376886_2377891_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP042153.1_2378060_2378666_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
