The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2781709	440977	459403	2781709	integrase,coat,terminase	Staphylococcus_phage(90.48%)	26	437702:437716	452364:452378
437702:437716	attL	TATTACTAAAACAAA	NA	NA	NA	NA
WP_001052484.1|440977_441169_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
WP_001261460.1|441412_441709_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|441729_442233_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|442284_442527_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_031765313.1|443667_444882_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	95.8	2.0e-218
WP_000668215.1|445145_445871_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	28.1	3.1e-17
WP_001245562.1|446042_446255_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	87.1	6.6e-29
WP_001138300.1|446255_446528_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	7.2e-44
WP_031795576.1|446539_446686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058498.1|446678_446891_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	70.6	1.4e-18
WP_001038250.1|446892_447252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103969.1|447252_447570_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	84.1	1.3e-33
WP_145411572.1|447633_448503_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	94.1	3.1e-157
WP_031765320.1|448519_449977_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.5	3.5e-278
WP_031765322.1|450277_450640_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	94.2	6.0e-62
WP_000998179.1|450641_450926_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	100.0	1.2e-49
WP_031765326.1|450922_451564_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	88.3	4.5e-105
WP_001288441.1|452271_452616_+	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
452364:452378	attR	TATTACTAAAACAAA	NA	NA	NA	NA
WP_031769358.1|452650_453229_+	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	100.0	9.2e-81
WP_031765331.1|453457_453985_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	95.4	4.3e-85
WP_031769360.1|453987_454329_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	99.1	4.9e-58
WP_031765334.1|454325_454895_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	3.0e-100
WP_001035599.1|455049_455754_-	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_031765336.1|456684_457242_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	69.4	1.7e-63
WP_000273396.1|457800_458220_+	hypothetical protein	NA	Q9MBN1	Staphylococcus_prophage	100.0	8.7e-81
WP_001606776.1|458233_459403_+	hypothetical protein	NA	Q9MBN0	Staphylococcus_prophage	99.5	1.6e-212
>prophage 2
NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2781709	798720	806541	2781709		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|798720_799776_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|799775_800462_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|800436_800910_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|801252_801693_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|801972_802557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|802655_803369_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|803372_803792_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|803793_804462_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|804812_805406_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|805389_806541_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 3
NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2781709	818512	833155	2781709		uncultured_Caudovirales_phage(50.0%)	16	NA	NA
WP_000663030.1|818512_819571_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|819909_820452_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_025174185.1|820894_821062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|821330_822248_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|822338_822440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|822517_824023_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930018.1|824365_824866_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	2.9e-51
WP_001068501.1|824885_825752_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001790091.1|826136_826403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000692521.1|826552_826951_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855519.1|826913_829019_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|829136_830108_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|830288_830444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|830482_831454_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|831440_832397_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|832393_833155_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 4
NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2781709	914736	926672	2781709	integrase,coat,terminase	Staphylococcus_phage(85.71%)	19	914575:914593	930135:930153
914575:914593	attL	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000270270.1|914736_915957_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.0	1.2e-98
WP_001661453.1|915970_917359_-	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_001661454.1|917385_917958_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000560872.1|918129_918351_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JFN1	uncultured_Caudovirales_phage	43.5	2.0e-07
WP_000124597.1|918351_918624_+	helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	84.4	7.7e-38
WP_000784893.1|918635_918782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058498.1|918774_918987_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	70.6	1.4e-18
WP_001038250.1|918988_919348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103969.1|919348_919666_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	84.1	1.3e-33
WP_145411580.1|919729_920599_+	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	93.4	5.7e-159
WP_000447476.1|920612_922322_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	95.8	0.0e+00
WP_000356929.1|922651_923032_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.0e-67
WP_001047694.1|923028_923670_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.0	1.0e-109
WP_001190609.1|924016_924358_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.1e-57
WP_000846278.1|924369_924948_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	37.9	4.0e-28
WP_000404187.1|924965_925184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771352.1|925234_925762_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	2.7e-87
WP_072546814.1|925866_926106_+	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	81.0	2.3e-30
WP_001293072.1|926102_926672_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
930135:930153	attR	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 5
NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2781709	1020222	1073756	2781709	bacteriocin,protease,transposase,tRNA	Streptococcus_phage(33.33%)	54	NA	NA
WP_000448934.1|1020222_1021212_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1021505_1021901_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001557163.1|1022105_1023425_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_001217728.1|1023791_1024511_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959282.1|1024631_1025618_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|1025665_1027474_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|1027933_1028740_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|1028762_1029128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224619.1|1029231_1029825_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242103.1|1030010_1030358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1030374_1031010_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1031026_1031836_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669923.1|1031832_1032687_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1032707_1034093_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1034102_1035947_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|1036224_1036995_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1037191_1038277_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570687.1|1038618_1040187_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_114306625.1|1040331_1041090_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1041283_1041793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001795273.1|1041905_1043114_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258645.1|1043073_1044249_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|1044681_1046166_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1046146_1046407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049950.1|1046406_1047969_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|1048270_1049074_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001795272.1|1049292_1051617_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|1051633_1052992_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414165.1|1053130_1054642_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1055128_1055698_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1055907_1056126_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|1056206_1057193_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1057391_1057568_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|1057582_1058185_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031763719.1|1059100_1059202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|1059211_1059484_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_114283588.1|1059527_1061492_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668627.1|1061494_1061815_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571168.1|1061811_1062453_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_001795266.1|1062540_1062831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792054.1|1062971_1063109_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1063197_1063554_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1064041_1065001_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1065046_1065178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001788574.1|1065241_1065532_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_000620949.1|1065621_1066173_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1066224_1067163_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_001791731.1|1067313_1067418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001816819.1|1067494_1068706_+	isochorismate synthase	NA	NA	NA	NA	NA
WP_000526694.1|1068692_1070366_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150197.1|1070352_1071156_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184945.1|1071148_1071970_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284458.1|1072207_1072537_-	staphostatin B	NA	NA	NA	NA	NA
WP_001089094.1|1072574_1073756_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2781709	1093794	1102267	2781709		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1093794_1094277_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1094263_1095388_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1095391_1096096_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1096095_1096359_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1096360_1097032_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032741.1|1097024_1099214_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
WP_000483720.1|1099192_1100677_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1100669_1101698_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1101700_1102267_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2781709	1725113	1734156	2781709	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1725113_1725632_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1725653_1727927_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1728129_1730409_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1730683_1730944_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1730962_1732102_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1732124_1733150_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1733151_1734156_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2781709	1849704	1921317	2781709	protease,tRNA	Staphylococcus_phage(95.65%)	67	NA	NA
WP_001266162.1|1849704_1850349_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_000434765.1|1850363_1851155_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_000411084.1|1851704_1852553_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
WP_000265417.1|1852556_1853966_-	Mn(2+)-dependent dipeptidase Sapep	NA	NA	NA	NA	NA
WP_001051856.1|1854523_1854946_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_001217125.1|1854962_1855658_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000004334.1|1855654_1857316_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_031894898.1|1857722_1858991_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
WP_114306649.1|1859107_1865668_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.9	1.7e-308
WP_000836461.1|1865993_1866305_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001108730.1|1866326_1868741_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1869031_1870213_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1870322_1871276_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_145411586.1|1871272_1871836_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	4.1e-102
WP_000757543.1|1871958_1872360_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1872931_1873759_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1873761_1873881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1873992_1874994_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1875115_1875580_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1875592_1876774_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1876784_1877417_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000384185.1|1877423_1878455_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|1878947_1880450_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1880972_1881287_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1881286_1882579_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1882665_1883520_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1883795_1884020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153742.1|1884802_1885246_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1885232_1885676_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1885971_1886607_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1887046_1887760_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1888019_1888322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1888577_1888943_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1888939_1889293_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_114306650.1|1891289_1892123_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	3.9e-157
WP_000366163.1|1892334_1893243_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1893364_1894561_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1894932_1896525_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_012840522.1|1896902_1897649_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	5.4e-142
WP_000672013.1|1897653_1898127_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1898192_1898450_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778527.1|1898446_1899448_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	3.4e-184
WP_000348364.1|1899452_1900931_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1901089_1901545_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1901847_1902498_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1902578_1903574_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1903648_1904275_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1904315_1904657_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1904757_1905330_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1906684_1906780_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1906902_1907004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1908079_1909309_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001793440.1|1909301_1911041_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_001791797.1|1911021_1911156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1911218_1911938_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1912039_1912147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1912095_1912815_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_145411587.1|1912935_1913655_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	5.1e-129
WP_001039454.1|1913712_1914435_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1914559_1915267_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001792819.1|1915702_1915921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092780.1|1916229_1916811_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_000469591.1|1917283_1917502_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_000550252.1|1917757_1918231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543854.1|1918235_1919027_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|1919396_1920380_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_114306651.1|1920381_1921317_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	6.7e-174
>prophage 9
NZ_CP042153	Staphylococcus aureus strain B4-59C chromosome, complete genome	2781709	2025622	2125451	2781709	plate,integrase,portal,protease,tRNA,tail,terminase,capsid,holin,head	Staphylococcus_phage(74.24%)	107	2025014:2025038	2127737:2127761
2025014:2025038	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000545370.1|2025622_2027050_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027917.1|2027062_2028520_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2028521_2028824_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|2029190_2030729_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|2030817_2032017_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|2032029_2034033_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|2034036_2036229_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|2036225_2036918_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2037089_2037392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2037500_2038796_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000434933.1|2040854_2041181_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2041472_2041646_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2041626_2042229_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2042499_2043321_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|2043313_2044783_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|2044966_2046043_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2046062_2046857_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2046928_2047036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2047046_2048609_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|2048813_2049911_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|2050279_2050840_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2050892_2051822_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|2052014_2052188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|2052239_2053619_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|2053738_2054767_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2055036_2055438_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2056010_2056184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|2056634_2057675_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2057731_2058574_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2058570_2059128_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2059187_2059712_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2059832_2060396_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2060461_2061202_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|2061201_2062074_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|2062070_2062751_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|2062751_2063648_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|2063644_2064025_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2064282_2064459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2064701_2064800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2064999_2066286_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001797815.1|2066564_2066885_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_114306654.1|2066869_2068300_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000766912.1|2069548_2070502_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_000185611.1|2071178_2071919_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000930251.1|2072263_2073718_-	CHAP domain-containing protein	NA	A0A0N6WMR3	Staphylococcus_phage	95.6	2.3e-277
WP_000387655.1|2073728_2074031_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	94.0	6.5e-46
WP_000466781.1|2074569_2074869_-	DUF2951 family protein	NA	A0A2I6PER2	Staphylococcus_phage	99.0	4.5e-31
WP_000916020.1|2074914_2075079_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166602.1|2075071_2075461_-	DUF2977 domain-containing protein	NA	M9QYR4	Staphylococcus_phage	92.2	2.8e-57
WP_000067150.1|2075460_2076927_-|plate	BppU family phage baseplate upper protein	plate	Q4ZCZ8	Staphylococcus_virus	93.0	9.3e-255
WP_000429548.1|2076926_2078837_-	hypothetical protein	NA	R4WAL5	Staphylococcus_phage	99.4	0.0e+00
WP_000179860.1|2078852_2079143_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000384455.1|2079142_2080726_-	peptidase	NA	M9QX27	Staphylococcus_phage	99.4	3.5e-308
WP_001190533.1|2080734_2081559_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003411.1|2081558_2087735_-|tail	phage tail tape measure protein	tail	A0A2I6PEL0	Staphylococcus_phage	96.9	0.0e+00
WP_012840525.1|2087748_2087907_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	86.5	1.9e-17
WP_000589169.1|2087948_2088299_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	98.3	6.8e-55
WP_000169126.1|2088356_2088812_-	Ig domain-containing protein	NA	Q9B0D4	Staphylococcus_phage	96.7	1.2e-75
WP_000807543.1|2088903_2089545_-|tail	tail protein	tail	A0A2I6PE59	Staphylococcus_phage	97.2	4.7e-118
WP_001023810.1|2089579_2089975_-	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	98.5	7.4e-66
WP_000110016.1|2089975_2090377_-	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	98.5	1.2e-66
WP_000395500.1|2090373_2090706_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	98.2	7.6e-56
WP_000050973.1|2090717_2090996_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_012840526.1|2091064_2092228_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	99.0	5.2e-216
WP_000061859.1|2092239_2093013_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	1.2e-136
WP_001100667.1|2092996_2094235_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	1.5e-234
WP_114306655.1|2094239_2095931_-|terminase	terminase large subunit	terminase	A0A2I6PDP8	Staphylococcus_phage	97.3	0.0e+00
WP_000778931.1|2095920_2096226_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	99.0	1.4e-48
WP_000160696.1|2096352_2096667_-	HNH endonuclease	NA	M9QQL5	Staphylococcus_phage	99.0	5.5e-56
WP_000590121.1|2096821_2097238_-	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	99.3	1.1e-75
WP_000264723.1|2097265_2097466_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	89.4	3.2e-25
WP_000141181.1|2097465_2097708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195822.1|2097704_2097911_-	DUF1381 domain-containing protein	NA	A0A0H4IPW6	Staphylococcus_phage	95.6	8.4e-29
WP_000185696.1|2097947_2098484_-	hypothetical protein	NA	M1SNY5	Staphylococcus_phage	98.3	1.4e-94
WP_000066807.1|2098476_2098719_-	hypothetical protein	NA	Q8SDV4	Staphylococcus_phage	98.8	6.0e-34
WP_001065082.1|2098708_2098960_-	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	98.8	1.2e-37
WP_001126847.1|2098974_2099223_-	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	91.5	1.6e-37
WP_000029396.1|2099223_2099583_-	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	95.8	2.7e-59
WP_001187247.1|2099583_2099769_-	DUF3113 family protein	NA	B7T0B3	Staphylococcus_virus	93.4	1.1e-24
WP_078056504.1|2100237_2100651_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000123130.1|2100629_2100830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012840529.1|2100826_2102683_-	primase	NA	B6D7K5	Listeria_phage	40.8	3.6e-118
WP_000184025.1|2104457_2105093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001003951.1|2105115_2105874_-	DUF1351 domain-containing protein	NA	A0A2H4J082	uncultured_Caudovirales_phage	23.1	1.4e-07
WP_000171560.1|2105884_2106208_-	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	54.2	5.7e-24
WP_001105358.1|2106220_2106832_-	hypothetical protein	NA	B6D7K1	Listeria_phage	45.6	4.1e-47
WP_000802314.1|2106854_2107091_-	hypothetical protein	NA	D2JGJ9	Staphylococcus_phage	83.1	5.5e-32
WP_000291082.1|2107098_2107359_-	DUF1108 family protein	NA	Q4ZDY8	Staphylococcus_virus	47.7	2.7e-16
WP_001285953.1|2107457_2107619_-	DUF1270 family protein	NA	A7TWM3	Staphylococcus_phage	96.2	5.6e-20
WP_001120202.1|2107615_2107936_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	98.1	5.6e-56
WP_078099424.1|2107905_2108097_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	92.1	3.3e-11
WP_000939498.1|2108086_2108230_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_031838117.1|2108505_2108703_-	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	93.8	9.5e-22
WP_000362645.1|2108771_2108984_+	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	98.6	1.3e-32
WP_000435352.1|2109188_2109632_-	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	97.3	1.1e-73
WP_000272856.1|2109644_2109893_-	helix-turn-helix transcriptional regulator	NA	Q4ZBN5	Staphylococcus_phage	98.8	1.8e-38
WP_001260487.1|2110056_2110380_+	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000525014.1|2110392_2110854_+	hypothetical protein	NA	R4WEA5	Staphylococcus_phage	99.3	1.6e-83
WP_001025527.1|2111385_2112270_+	hypothetical protein	NA	A0A0K1LKD8	Staphylococcus_phage	91.8	3.4e-151
WP_000857172.1|2114415_2115453_+|integrase	site-specific integrase	integrase	Q4ZCY6	Staphylococcus_virus	96.5	3.1e-172
WP_000595392.1|2116571_2117588_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_145373886.1|2117609_2118665_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.1e-35
WP_000206625.1|2119100_2120324_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|2120709_2122017_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240647.1|2122556_2124173_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.5	1.3e-156
WP_000917289.1|2124248_2124533_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2124707_2125451_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
2127737:2127761	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
