assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	1	414468-414568	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|128aa|up_8|NZ_CP040625.1_407074_407458_-,NA|98aa|up_6|NZ_CP040625.1_408411_408705_-,NA|34aa|up_1|NZ_CP040625.1_413692_413794_+,NA|86aa|up_0|NZ_CP040625.1_414001_414259_-,NA|221aa|down_1|NZ_CP040625.1_415658_416321_-	NA|194aa|up_9|NZ_CP040625.1_406427_407009_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP040625.1_407074_407458_-	NA	NA|209aa|up_7|NZ_CP040625.1_407712_408339_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP040625.1_408411_408705_-	NA	NA|508aa|up_5|NZ_CP040625.1_408783_410307_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP040625.1_410322_410892_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP040625.1_411383_412139_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP040625.1_412219_413608_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP040625.1_413692_413794_+	NA	NA|86aa|up_0|NZ_CP040625.1_414001_414259_-	NA	NA|319aa|down_0|NZ_CP040625.1_414584_415541_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP040625.1_415658_416321_-	NA	NA|136aa|down_2|NZ_CP040625.1_416463_416871_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP040625.1_417383_417962_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP040625.1_417961_419230_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP040625.1_419267_420734_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP040625.1_420758_422300_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP040625.1_422367_423561_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP040625.1_423587_423788_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NZ_CP040625.1_424285_424516_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	2	682450-682542	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_3|NZ_CP040625.1_678933_679041_+,NA|169aa|down_4|NZ_CP040625.1_686289_686796_+,NA|239aa|down_5|NZ_CP040625.1_686957_687674_+	NA|313aa|up_9|NZ_CP040625.1_673135_674074_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP040625.1_674284_674821_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP040625.1_674989_675466_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP040625.1_675505_676801_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP040625.1_676828_677350_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP040625.1_677848_678859_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP040625.1_678933_679041_+	NA	NA|128aa|up_2|NZ_CP040625.1_679166_679550_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP040625.1_679546_681208_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP040625.1_681596_682232_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP040625.1_682670_683498_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP040625.1_683645_684596_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP040625.1_684650_685370_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP040625.1_685353_686154_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP040625.1_686289_686796_+	NA	NA|239aa|down_5|NZ_CP040625.1_686957_687674_+	NA	NA|263aa|down_6|NZ_CP040625.1_687842_688631_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP040625.1_688881_689256_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP040625.1_690203_691133_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP040625.1_691327_691552_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	3	798333-798415	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|69aa|up_9|NZ_CP040625.1_784933_785140_+,NA|34aa|down_1|NZ_CP040625.1_799871_799973_+,NA|82aa|down_3|NZ_CP040625.1_801621_801867_-,NA|89aa|down_6|NZ_CP040625.1_803667_803934_+	NA|69aa|up_9|NZ_CP040625.1_784933_785140_+	NA	NA|237aa|up_8|NZ_CP040625.1_785227_785938_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP040625.1_785921_786926_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP040625.1_787399_789340_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP040625.1_789610_791494_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP040625.1_791505_793287_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP040625.1_793508_794486_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP040625.1_794478_795993_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP040625.1_796232_797291_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP040625.1_797641_798184_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP040625.1_798863_799781_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP040625.1_799871_799973_+	NA	NA|502aa|down_2|NZ_CP040625.1_800050_801556_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_3|NZ_CP040625.1_801621_801867_-	NA	NA|167aa|down_4|NZ_CP040625.1_801896_802397_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|NZ_CP040625.1_802416_803283_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|NZ_CP040625.1_803667_803934_+	NA	NA|133aa|down_7|NZ_CP040625.1_804083_804482_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|NZ_CP040625.1_804444_806550_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|NZ_CP040625.1_806667_807639_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	4	839428-839508	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	10	839454-839482|839454-839482|839454-839482|839454-839482|839454-839482|839454-839482|839454-839482|839454-839482|839454-839482|839454-839482	NZ_CP040625.1_374686-374658|NZ_CP040625.1_1870888-1870860|NZ_CP040625.1_911481-911509|NZ_CP040625.1_996519-996547|NZ_CP040625.1_1682198-1682226|NZ_CP040625.1_2082299-2082327|NZ_CP040625.1_296417-296389|NZ_CP040625.1_807897-807869|NZ_CP040625.1_1196333-1196305|NZ_CP040625.1_2626391-2626363	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|35aa|up_7|NZ_CP040625.1_830341_830446_+,NA|36aa|up_5|NZ_CP040625.1_831878_831986_+,NA	NA|191aa|up_9|NZ_CP040625.1_826782_827355_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP040625.1_827768_830300_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP040625.1_830341_830446_+	NA	NA|370aa|up_6|NZ_CP040625.1_830614_831725_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP040625.1_831878_831986_+	NA	NA|280aa|up_4|NZ_CP040625.1_832133_832973_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP040625.1_833146_833797_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP040625.1_833793_834030_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP040625.1_834298_836284_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP040625.1_836291_839138_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP040625.1_839744_840677_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP040625.1_840682_841522_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP040625.1_841529_842015_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP040625.1_842022_843462_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP040625.1_843528_844464_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP040625.1_845343_846255_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP040625.1_846251_847247_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP040625.1_847356_848301_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP040625.1_848873_849461_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP040625.1_849703_850606_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	5	844826-844911	5	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	3	844856-844881|844856-844881|844856-844881	NZ_CP040625.1_296282-296257|NZ_CP040625.1_807929-807904|NZ_CP040625.1_976905-976880	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|280aa|up_9|NZ_CP040625.1_832133_832973_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP040625.1_833146_833797_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP040625.1_833793_834030_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP040625.1_834298_836284_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP040625.1_836291_839138_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP040625.1_839744_840677_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP040625.1_840682_841522_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP040625.1_841529_842015_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP040625.1_842022_843462_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP040625.1_843528_844464_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP040625.1_845343_846255_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP040625.1_846251_847247_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP040625.1_847356_848301_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP040625.1_848873_849461_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP040625.1_849703_850606_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|391aa|down_5|NZ_CP040625.1_851079_852252_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|210aa|down_6|NZ_CP040625.1_852640_853270_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|NZ_CP040625.1_853912_854926_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP040625.1_854978_855989_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP040625.1_856127_857318_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	6	911415-911496	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	911439-911472|911439-911472	NZ_CP040625.1_1409946-1409913|NZ_CP040625.1_1501761-1501794	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|126aa|up_3|NZ_CP040625.1_907448_907826_+,NA	NA|180aa|up_9|NZ_CP040625.1_901519_902059_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NZ_CP040625.1_902208_902529_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NZ_CP040625.1_902672_903029_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NZ_CP040625.1_903186_903567_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|362aa|up_5|NZ_CP040625.1_904467_905553_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|up_4|NZ_CP040625.1_905549_907442_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|up_3|NZ_CP040625.1_907448_907826_+	NA	NA|261aa|up_2|NZ_CP040625.1_907976_908759_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|up_1|NZ_CP040625.1_908884_909616_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|up_0|NZ_CP040625.1_910124_910787_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|129aa|down_0|NZ_CP040625.1_912052_912439_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP040625.1_912431_912728_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP040625.1_912977_914003_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP040625.1_913995_914691_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP040625.1_914708_915530_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP040625.1_915673_916894_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP040625.1_916981_917710_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP040625.1_917733_918462_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|245aa|down_8|NZ_CP040625.1_918636_919371_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_9|NZ_CP040625.1_919520_919733_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	7	1111853-1111940	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|40aa|up_0|NZ_CP040625.1_1111729_1111849_+,NA|45aa|down_0|NZ_CP040625.1_1111949_1112084_-,NA|432aa|down_1|NZ_CP040625.1_1112235_1113531_+,NA|68aa|down_2|NZ_CP040625.1_1113551_1113755_-	NA|730aa|up_9|NZ_CP040625.1_1100307_1102497_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP040625.1_1102475_1103960_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP040625.1_1103952_1104981_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP040625.1_1104983_1105550_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP040625.1_1105564_1107043_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP040625.1_1107064_1108312_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP040625.1_1108576_1109383_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP040625.1_1109375_1110776_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP040625.1_1110790_1111366_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP040625.1_1111729_1111849_+	NA	NA|45aa|down_0|NZ_CP040625.1_1111949_1112084_-	NA	NA|432aa|down_1|NZ_CP040625.1_1112235_1113531_+	NA	NA|68aa|down_2|NZ_CP040625.1_1113551_1113755_-	NA	NA|391aa|down_3|NZ_CP040625.1_1113955_1115128_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|NZ_CP040625.1_1115181_1115724_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|NZ_CP040625.1_1115877_1116144_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|NZ_CP040625.1_1116146_1117865_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|NZ_CP040625.1_1118101_1118335_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|NZ_CP040625.1_1118532_1119894_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|NZ_CP040625.1_1119890_1120910_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	8	1196367-1196452	8	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	3	1196397-1196422|1196397-1196422|1196397-1196422	NZ_CP040625.1_296257-296282|NZ_CP040625.1_807904-807929|NZ_CP040625.1_807960-807985	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|169aa|up_8|NZ_CP040625.1_1190062_1190569_+,NA|62aa|up_5|NZ_CP040625.1_1192650_1192836_-,NA|83aa|up_4|NZ_CP040625.1_1193045_1193294_-,NA|78aa|up_3|NZ_CP040625.1_1193457_1193691_-,NA|49aa|up_1|NZ_CP040625.1_1195799_1195946_+,NA|75aa|up_0|NZ_CP040625.1_1195902_1196127_+,NA|76aa|down_6|NZ_CP040625.1_1203426_1203654_+	NA|134aa|up_9|NZ_CP040625.1_1188989_1189391_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|NZ_CP040625.1_1190062_1190569_+	NA	NA|166aa|up_7|NZ_CP040625.1_1190827_1191325_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|NZ_CP040625.1_1191478_1191829_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|NZ_CP040625.1_1192650_1192836_-	NA	NA|83aa|up_4|NZ_CP040625.1_1193045_1193294_-	NA	NA|78aa|up_3|NZ_CP040625.1_1193457_1193691_-	NA	NA|320aa|up_2|NZ_CP040625.1_1194167_1195127_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP040625.1_1195799_1195946_+	NA	NA|75aa|up_0|NZ_CP040625.1_1195902_1196127_+	NA	NA|239aa|down_0|NZ_CP040625.1_1196627_1197344_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP040625.1_1197451_1198177_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP040625.1_1198271_1198997_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP040625.1_1199434_1200436_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP040625.1_1200458_1201391_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|NZ_CP040625.1_1201613_1203119_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP040625.1_1203426_1203654_+	NA	NA|316aa|down_7|NZ_CP040625.1_1203958_1204906_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP040625.1_1205154_1205343_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP040625.1_1206254_1206389_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	9	2309261-2309411	9	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|NZ_CP040625.1_2304132_2304363_-,NA|364aa|up_0|NZ_CP040625.1_2308151_2309243_+,NA|35aa|down_0|NZ_CP040625.1_2309742_2309847_-,NA|31aa|down_2|NZ_CP040625.1_2311958_2312051_+	NA|237aa|up_9|NZ_CP040625.1_2299742_2300453_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP040625.1_2300573_2301017_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP040625.1_2301216_2301630_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP040625.1_2302087_2303461_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP040625.1_2304132_2304363_-	NA	NA|313aa|up_4|NZ_CP040625.1_2304393_2305332_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP040625.1_2305766_2306432_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP040625.1_2306583_2306904_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP040625.1_2306905_2307886_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP040625.1_2308151_2309243_+	NA	NA|35aa|down_0|NZ_CP040625.1_2309742_2309847_-	NA	NA|379aa|down_1|NZ_CP040625.1_2310533_2311670_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP040625.1_2311958_2312051_+	NA	NA|286aa|down_3|NZ_CP040625.1_2312755_2313613_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP040625.1_2313680_2314463_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP040625.1_2314695_2316501_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP040625.1_2317181_2318720_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP040625.1_2318754_2320887_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP040625.1_2320898_2321333_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP040625.1_2321332_2322439_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	10	2434758-2434951	1	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	16	2434781-2434813|2434781-2434813|2434781-2434813|2434781-2434813|2434781-2434813|2434781-2434813|2434837-2434872|2434837-2434872|2434837-2434872|2434837-2434872|2434837-2434872|2434896-2434928|2434896-2434928|2434896-2434928|2434896-2434928|2434896-2434928	NZ_CP040625.1_844892-844924|NZ_CP040625.1_1501807-1501839|NZ_CP040625.1_2071585-2071617|NZ_CP040625.1_2707442-2707474|NZ_CP040625.1_1196386-1196354|NZ_CP040625.1_1409900-1409868|NZ_CP040625.1_1196333-1196298|NZ_CP040625.1_1870888-1870853|NZ_CP040625.1_296417-296382|NZ_CP040625.1_1682198-1682233|NZ_CP040625.1_2082299-2082334|NZ_CP040625.1_844892-844924|NZ_CP040625.1_2071585-2071617|NZ_CP040625.1_2707442-2707474|NZ_CP040625.1_1196386-1196354|NZ_CP040625.1_1409900-1409868	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP040625.1_2425285_2425450_+,NA|106aa|up_8|NZ_CP040625.1_2425694_2426012_+,NA|84aa|up_5|NZ_CP040625.1_2431136_2431388_+,NA|57aa|up_0|NZ_CP040625.1_2434527_2434698_+,NA	NA|55aa|up_9|NZ_CP040625.1_2425285_2425450_+	NA	NA|106aa|up_8|NZ_CP040625.1_2425694_2426012_+	NA	NA|1056aa|up_7|NZ_CP040625.1_2426198_2429366_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP040625.1_2429482_2430748_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP040625.1_2431136_2431388_+	NA	NA|255aa|up_4|NZ_CP040625.1_2431379_2432144_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP040625.1_2432305_2432746_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP040625.1_2432738_2433950_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP040625.1_2434051_2434402_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP040625.1_2434527_2434698_+	NA	NA|341aa|down_0|NZ_CP040625.1_2435092_2436115_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP040625.1_2436134_2436734_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP040625.1_2436740_2436974_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP040625.1_2436979_2437426_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP040625.1_2437439_2437925_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP040625.1_2437921_2439181_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP040625.1_2439243_2439738_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP040625.1_2439739_2440246_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP040625.1_2440276_2441281_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP040625.1_2441450_2442056_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_007410625.1_ASM741062v1	NZ_CP040625	Staphylococcus aureus strain JKD6004-DR chromosome, complete genome	11	2931508-2931591	10	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	4	2931534-2931565|2931534-2931565|2931534-2931565|2931534-2931565	NZ_CP040625.1_844992-845023|NZ_CP040625.1_845050-845081|NZ_CP040625.1_1121813-1121844|NZ_CP040625.1_1501851-1501882	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|64aa|up_7|NZ_CP040625.1_2925459_2925651_+,NA|166aa|up_6|NZ_CP040625.1_2926737_2927235_-,NA	NA|253aa|up_9|NZ_CP040625.1_2922739_2923498_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_8|NZ_CP040625.1_2923487_2925368_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_7|NZ_CP040625.1_2925459_2925651_+	NA	NA|166aa|up_6|NZ_CP040625.1_2926737_2927235_-	NA	NA|250aa|up_5|NZ_CP040625.1_2927236_2927986_-	pfam15526, Ntox21, Novel toxin 21	NA|268aa|up_4|NZ_CP040625.1_2928004_2928808_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|67aa|up_3|NZ_CP040625.1_2929291_2929492_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP040625.1_2929618_2930188_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP040625.1_2930440_2930836_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP040625.1_2930903_2931257_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP040625.1_2931809_2932649_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP040625.1_2932691_2933411_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP040625.1_2933410_2935288_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP040625.1_2935354_2936734_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP040625.1_2936877_2937231_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP040625.1_2937350_2937488_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
