The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP041691	Bacillus amyloliquefaciens strain ZJU1 chromosome, complete genome	4064151	657209	667100	4064151		Synechococcus_phage(50.0%)	9	NA	NA
WP_014417100.1|657209_658502_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	27.3	4.5e-19
WP_014417101.1|658577_659297_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3G7P8	Synechococcus_phage	44.3	1.7e-47
WP_014417102.1|659296_659551_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	M4QPE7	Synechococcus_phage	33.3	4.7e-05
WP_014417103.1|659547_660231_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_014417104.1|660214_662443_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.7	4.2e-158
WP_014417105.1|662418_663849_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	6.2e-54
WP_014417106.1|663940_664981_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.1	1.8e-63
WP_007408902.1|664977_665565_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.8	1.3e-26
WP_014417107.1|665561_667100_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	50.5	3.3e-77
>prophage 2
NZ_CP041691	Bacillus amyloliquefaciens strain ZJU1 chromosome, complete genome	4064151	1124141	1207046	4064151	integrase,coat,tRNA	Bacillus_phage(47.62%)	110	1144036:1144051	1183283:1183298
WP_014417415.1|1124141_1125134_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_014417416.1|1125877_1127512_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014417417.1|1127618_1128554_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_007409113.1|1128557_1129475_+	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA	NA
WP_003155039.1|1129487_1130564_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.9	1.7e-16
WP_014417419.1|1130556_1131474_+	oligopeptide ABC transporter ATP-binding protein OppF	NA	M1HP82	Acanthocystis_turfacea_Chlorella_virus	24.6	1.5e-05
WP_014417420.1|1131580_1132777_+	putative glycoside hydrolase	NA	NA	NA	NA	NA
WP_007409110.1|1132885_1133464_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003155034.1|1133642_1134038_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_014417421.1|1134094_1134751_-	TerC family protein	NA	W8EBD0	Pseudomonas_phage	41.9	2.2e-30
WP_003155032.1|1135026_1135683_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_014417422.1|1135834_1136995_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_003155028.1|1137222_1139052_+	oligoendopeptidase F	NA	NA	NA	NA	NA
WP_003155026.1|1139089_1139257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003155024.1|1139543_1140446_-	DsbA family protein	NA	NA	NA	NA	NA
WP_014417424.1|1140442_1140841_-	thiol management oxidoreductase	NA	NA	NA	NA	NA
WP_014721000.1|1141069_1141756_-	lytic transglycosylase domain-containing protein	NA	A0A1P8CWQ1	Bacillus_phage	70.3	2.3e-38
WP_014417426.1|1141760_1142333_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_012117290.1|1142457_1142823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003155019.1|1142850_1143486_+	GTP diphosphokinase	NA	NA	NA	NA	NA
WP_003155018.1|1143503_1144304_+	NAD kinase	NA	NA	NA	NA	NA
1144036:1144051	attL	CGATTCAGCTTGCGGA	NA	NA	NA	NA
WP_014417427.1|1144318_1145212_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	29.3	1.4e-06
WP_007409101.1|1145244_1145994_-	bis(5'-nucleosyl)-tetraphosphatase PrpE	NA	A0A1V0SJW2	Klosneuvirus	26.4	9.9e-11
WP_014417428.1|1146221_1148066_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_015417218.1|1148315_1149023_+	thiaminase II	NA	NA	NA	NA	NA
WP_014721002.1|1149000_1149618_+	thiazole tautomerase TenI	NA	NA	NA	NA	NA
WP_014417430.1|1149601_1150711_+	glycine oxidase ThiO	NA	NA	NA	NA	NA
WP_007409096.1|1150707_1150911_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_007610655.1|1150907_1151678_+	thiazole synthase	NA	NA	NA	NA	NA
WP_014417431.1|1151674_1152685_+	thiazole biosynthesis adenylyltransferase ThiF	NA	NA	NA	NA	NA
WP_014417432.1|1152707_1153520_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003155001.1|1153650_1154427_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_014721003.1|1154518_1155133_+|coat	spore coat protein	coat	NA	NA	NA	NA
WP_003154997.1|1155191_1155635_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_003154995.1|1155780_1156263_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_014417434.1|1156413_1156914_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_014417435.1|1157006_1157321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014417436.1|1157358_1157745_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_014417437.1|1157915_1158272_+	DUF1360 domain-containing protein	NA	NA	NA	NA	NA
WP_014417438.1|1158558_1158756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007610678.1|1158847_1159009_+	YjcZ family sporulation protein	NA	NA	NA	NA	NA
WP_003154986.1|1159175_1159430_+	stage VI sporulation protein F	NA	NA	NA	NA	NA
WP_014417439.1|1159498_1161784_-	ATP-dependent helicase	NA	A0A068EQC7	Bacillus_phage	33.3	2.4e-84
WP_014417440.1|1161904_1162159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014417441.1|1162227_1162977_+	subclass B1 metallo-beta-lactamase	NA	NA	NA	NA	NA
WP_014417442.1|1163018_1163741_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014417443.1|1163733_1164471_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	34.1	2.0e-27
WP_007409078.1|1164471_1164705_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014417444.1|1164863_1165295_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003154969.1|1165300_1165816_-	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_014417445.1|1165841_1166564_-	esterase family protein	NA	NA	NA	NA	NA
WP_014417446.1|1166933_1168055_+	methionine biosynthesis PLP-dependent protein	NA	NA	NA	NA	NA
WP_014417447.1|1168047_1169223_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_143854232.1|1169594_1170641_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	24.3	1.0e-05
WP_104678840.1|1170825_1171278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_140957617.1|1171274_1171724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854233.1|1171739_1172159_+	helix-turn-helix domain-containing protein	NA	A0A2H4IZR0	uncultured_Caudovirales_phage	61.1	8.5e-36
WP_143854234.1|1172545_1172869_+	hypothetical protein	NA	A0A0S2MUA3	Bacillus_phage	38.9	1.5e-08
WP_143854235.1|1173009_1173513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854236.1|1173512_1173728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854237.1|1173724_1174090_+	hypothetical protein	NA	R4JGJ3	Bacillus_phage	39.2	4.4e-12
WP_143854238.1|1174086_1174455_+	hypothetical protein	NA	A0A2H4J134	uncultured_Caudovirales_phage	41.4	8.0e-22
WP_143854239.1|1174673_1175858_+	hypothetical protein	NA	R4JEY6	Bacillus_phage	42.2	1.7e-65
WP_143854240.1|1175854_1176034_+	hypothetical protein	NA	A0A1P8CX65	Bacillus_phage	68.8	2.8e-12
WP_143854241.1|1176026_1176806_+	DNA replication protein	NA	A0A0N7GFF0	Paenibacillus_phage	54.4	5.4e-76
WP_143854242.1|1176802_1177312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854243.1|1177308_1178724_+	DNA helicase	NA	A0A2H4IZL9	uncultured_Caudovirales_phage	50.8	3.5e-126
WP_143854244.1|1178858_1179854_+	toprim domain-containing protein	NA	A0A2H4J6E6	uncultured_Caudovirales_phage	46.1	6.0e-72
WP_076982979.1|1179870_1180116_-	helix-turn-helix transcriptional regulator	NA	O64102	Bacillus_phage	41.2	2.8e-07
WP_029974735.1|1180169_1180379_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_029974733.1|1180492_1181719_+	hypothetical protein	NA	I7J4K0	Bacillus_phage	30.8	5.0e-44
WP_029974731.1|1181977_1182613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172618043.1|1182757_1182919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854245.1|1183011_1183482_+	hypothetical protein	NA	NA	NA	NA	NA
1183283:1183298	attR	CGATTCAGCTTGCGGA	NA	NA	NA	NA
WP_029974726.1|1183719_1184475_+	hypothetical protein	NA	A0A0N9SJW5	Paenibacillus_phage	51.1	3.0e-55
WP_143854246.1|1184509_1184944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854247.1|1184940_1185903_+	hypothetical protein	NA	A0A142F1R1	Bacillus_phage	34.0	9.7e-35
WP_172618044.1|1186068_1186224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854288.1|1186279_1189066_+	hypothetical protein	NA	A0A0N9S7Z3	Paenibacillus_phage	37.0	2.1e-90
WP_143854248.1|1189066_1189363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854249.1|1189359_1190421_+	hypothetical protein	NA	A0A0N9SHN6	Paenibacillus_phage	52.7	1.0e-77
WP_095284362.1|1190420_1190675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106503117.1|1190671_1191205_+	crossover junction endodeoxyribonuclease RuvC	NA	A0A2H4IZL3	uncultured_Caudovirales_phage	42.9	4.7e-31
WP_106503116.1|1191205_1191403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025851622.1|1191403_1191655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106503115.1|1191654_1192017_+	hypothetical protein	NA	A0A140HLL8	Bacillus_phage	35.2	2.8e-11
WP_158698605.1|1192123_1192261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854250.1|1192257_1192443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157829258.1|1192486_1192642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094247767.1|1192635_1193034_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	54.4	8.1e-28
WP_094247768.1|1192979_1193504_+	hypothetical protein	NA	A0A2K9VD13	Lactobacillus_phage	47.9	1.0e-22
WP_143854251.1|1193500_1195606_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	R4JDX9	Bacillus_phage	78.5	0.0e+00
WP_143854252.1|1195841_1196825_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	80.5	7.1e-150
WP_172618045.1|1196935_1197094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854253.1|1197090_1197642_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	D2XR49	Bacillus_phage	55.8	1.9e-43
WP_143854255.1|1197863_1198667_+	FAD-dependent thymidylate synthase	NA	A0A142F1S2	Bacillus_phage	62.2	3.7e-80
WP_155759828.1|1198670_1198844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854256.1|1198872_1199439_+	hypothetical protein	NA	A0A142F1S8	Bacillus_phage	60.0	1.8e-25
WP_101293960.1|1199638_1200658_+	hypothetical protein	NA	A0A1P8CWY7	Bacillus_phage	40.8	1.0e-18
WP_143854257.1|1200654_1201230_+	dephospho-CoA kinase	NA	U5PRK9	Bacillus_phage	43.9	1.7e-34
WP_101293958.1|1201212_1201605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101293957.1|1201721_1202900_+	N-6 DNA methylase	NA	A0A0N9ST12	Paenibacillus_phage	65.1	4.4e-146
WP_143854258.1|1202933_1203317_+	DUF134 domain-containing protein	NA	A0A0N9RZI0	Paenibacillus_phage	45.8	3.5e-20
WP_143854259.1|1203316_1203805_+	hypothetical protein	NA	A0A0N7GFF4	Paenibacillus_phage	47.0	1.1e-18
WP_143854260.1|1203892_1204693_+	hypothetical protein	NA	A0A0N9S810	Paenibacillus_phage	55.0	2.4e-71
WP_172618046.1|1204821_1204983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143854261.1|1205022_1205835_-	ATP-dependent DNA ligase	NA	O64130	Bacillus_phage	61.0	1.7e-96
WP_025851583.1|1205927_1206284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082998394.1|1206298_1206478_-	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	79.7	6.6e-22
WP_143854262.1|1206608_1207046_-	hypothetical protein	NA	A0A2H4J8A0	uncultured_Caudovirales_phage	70.9	6.1e-53
>prophage 3
NZ_CP041691	Bacillus amyloliquefaciens strain ZJU1 chromosome, complete genome	4064151	1210963	1239551	4064151	terminase,plate,tail,integrase,portal,holin,capsid,protease	Bacillus_phage(33.33%)	33	1205148:1205162	1231562:1231576
1205148:1205162	attL	GCTCCGAATGAAATC	NA	NA	NA	NA
WP_143854267.1|1210963_1211512_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4J6I5	uncultured_Caudovirales_phage	51.6	3.7e-39
WP_033575279.1|1211594_1213349_+|terminase	phage terminase large subunit	terminase	A0A2H4J484	uncultured_Caudovirales_phage	71.6	3.4e-251
WP_095284285.1|1213365_1213797_+	hypothetical protein	NA	A0A2H4J6Z8	uncultured_Caudovirales_phage	50.4	6.5e-31
WP_143854268.1|1213799_1215431_+|portal	phage portal protein	portal	A0A2H4J180	uncultured_Caudovirales_phage	57.2	4.8e-167
WP_143854269.1|1215430_1216255_+|capsid	minor capsid protein	capsid	A0A0N9SJR1	Paenibacillus_phage	52.4	4.5e-73
WP_143854270.1|1216345_1217017_+|protease	Clp protease ClpB	protease	A0A2H4IZP8	uncultured_Caudovirales_phage	44.5	2.3e-14
WP_033575283.1|1217028_1218132_+	DUF5309 family protein	NA	A0A2I7S650	Vibrio_phage	27.3	2.2e-30
WP_143854289.1|1218258_1218438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046341201.1|1218440_1218659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854271.1|1218672_1219059_+	hypothetical protein	NA	A0A0N9SGG4	Paenibacillus_phage	39.0	1.0e-19
WP_164970947.1|1219059_1219395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104678877.1|1219391_1219799_+	hypothetical protein	NA	A0A0N9SJT1	Paenibacillus_phage	53.7	1.8e-30
WP_033575287.1|1219805_1220195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029973260.1|1220219_1220774_+	hypothetical protein	NA	A0A0N9SHI3	Paenibacillus_phage	58.4	4.0e-49
WP_045208617.1|1220831_1221203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143854272.1|1221535_1224337_+|tail	phage tail tape measure protein	tail	A0A0N9SJR9	Paenibacillus_phage	38.0	1.2e-96
WP_143854273.1|1224340_1225765_+|tail	phage tail family protein	tail	A0A2H4JBY6	uncultured_Caudovirales_phage	43.2	2.6e-60
WP_143854274.1|1225776_1227177_+|tail	phage tail protein	tail	A0A0U4JID8	Exiguobacterium_phage	30.1	1.4e-34
WP_143854275.1|1227191_1229756_+	peptidase G2	NA	D6R401	Bacillus_phage	74.1	0.0e+00
WP_157829255.1|1229768_1231352_+|plate	BppU family phage baseplate upper protein	plate	M4ZRP1	Bacillus_phage	52.3	6.7e-57
WP_033575347.1|1231366_1231636_+	hypothetical protein	NA	NA	NA	NA	NA
1231562:1231576	attR	GCTCCGAATGAAATC	NA	NA	NA	NA
WP_095284268.1|1231636_1231825_+	XkdX family protein	NA	NA	NA	NA	NA
WP_013351581.1|1231828_1232038_+	hypothetical protein	NA	A0A290GDY2	Caldibacillus_phage	45.1	2.6e-09
WP_106503106.1|1232114_1233026_+	N-acetylmuramoyl-L-alanine amidase	NA	Q9ZXD7	Bacillus_phage	91.1	8.6e-158
WP_013351583.1|1233047_1233305_+|holin	holin	holin	A0A0U4JE55	Bacillus_phage	57.6	5.0e-23
WP_104679019.1|1233397_1233958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104679018.1|1233973_1234309_-	YolD-like family protein	NA	O64030	Bacillus_phage	34.7	2.6e-11
WP_029973246.1|1234354_1234567_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_143854276.1|1234726_1235512_+	helix-turn-helix domain-containing protein	NA	A0A288WFX2	Bacillus_phage	29.8	4.8e-16
WP_014417474.1|1235953_1236310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014417475.1|1236675_1236975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014417478.1|1237368_1237761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014417479.1|1237772_1239551_-	ribonuclease YeeF family protein	NA	A0A1P8CWI7	Bacillus_phage	53.6	1.7e-109
>prophage 4
NZ_CP041691	Bacillus amyloliquefaciens strain ZJU1 chromosome, complete genome	4064151	1283048	1295065	4064151	terminase,portal,holin	uncultured_Caudovirales_phage(40.0%)	22	NA	NA
WP_087920760.1|1283048_1284185_+	S9 family peptidase	NA	A0A1P8CWN8	Bacillus_phage	47.9	1.3e-94
WP_003154881.1|1284174_1284309_+	PhrA family phosphatase inhibitor	NA	NA	NA	NA	NA
WP_014417515.1|1284451_1285405_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A218KC88	Bacillus_phage	69.3	1.1e-62
WP_007610770.1|1285442_1285820_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	41.4	1.5e-15
WP_014417516.1|1285929_1286535_+	poly-gamma-glutamate hydrolase family protein	NA	A0A0Y0AJU6	Bacillus_phage	48.3	1.0e-42
WP_014721040.1|1286524_1286671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014417517.1|1286657_1287248_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	51.7	3.0e-39
WP_003154871.1|1287396_1287735_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	45.8	8.4e-18
WP_014417518.1|1287925_1288105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014417519.1|1288094_1288922_+|portal	phage portal protein	portal	S6BFM4	Thermus_phage	50.0	5.8e-20
WP_014417520.1|1288821_1289622_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	45.3	3.0e-58
WP_014417521.1|1289621_1289798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014417522.1|1289886_1290228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003154859.1|1290217_1290421_+	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	48.5	5.4e-12
WP_012117362.1|1290527_1291040_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0K2CNQ1	Brevibacillus_phage	44.6	2.9e-22
WP_014417523.1|1291152_1291812_+|terminase	terminase	terminase	A0A1B1P867	Bacillus_phage	33.3	3.4e-07
WP_014417525.1|1292189_1292561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007610833.1|1292565_1292763_+	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	61.8	7.3e-14
WP_014417526.1|1292819_1293581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003154815.1|1293632_1293896_+	hemolysin XhlA family protein	NA	A0A2H4JD40	uncultured_Caudovirales_phage	63.1	8.8e-23
WP_003154813.1|1293909_1294173_+|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	65.5	2.3e-23
WP_007407257.1|1294186_1295065_+	N-acetylmuramoyl-L-alanine amidase	NA	Q9ZXD7	Bacillus_phage	60.5	3.7e-81
>prophage 5
NZ_CP041691	Bacillus amyloliquefaciens strain ZJU1 chromosome, complete genome	4064151	1849555	1855769	4064151		Bacillus_phage(50.0%)	6	NA	NA
WP_014417834.1|1849555_1849948_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	G3MBF1	Bacillus_virus	59.1	5.0e-30
WP_007611605.1|1849907_1852010_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	U5PY35	Bacillus_phage	85.7	0.0e+00
WP_012117608.1|1852027_1853017_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	83.0	1.1e-155
WP_014417835.1|1853065_1853686_+	hypothetical protein	NA	A0A127AYS1	Bacillus_phage	48.4	5.4e-47
WP_007410370.1|1853735_1854494_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	50.4	1.1e-52
WP_014721211.1|1854800_1855769_+	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	40.9	8.0e-53
>prophage 6
NZ_CP041691	Bacillus amyloliquefaciens strain ZJU1 chromosome, complete genome	4064151	2188475	2239336	4064151	head,terminase,plate,tail,portal,holin,integrase,coat,capsid,protease	Bacillus_phage(42.11%)	62	2205179:2205197	2244921:2244939
WP_158319026.1|2188475_2189909_-	glycosyltransferase	NA	A0A1V0SGA9	Hokovirus	30.0	9.1e-05
WP_014418180.1|2190350_2190947_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_040221738.1|2191155_2191683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014418181.1|2191877_2193041_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1P8CWN6	Bacillus_phage	49.1	1.2e-68
WP_040221739.1|2193086_2193509_-|holin	phage holin family protein	holin	D6R405	Bacillus_phage	87.2	3.6e-58
WP_014418183.1|2193558_2193744_-	XkdX family protein	NA	Q9ZXD9	Bacillus_phage	72.1	5.8e-21
WP_040221740.1|2193743_2194106_-	hypothetical protein	NA	Q9ZXE0	Bacillus_phage	56.3	4.6e-30
WP_014418184.1|2194102_2195926_-|plate	phage baseplate upper protein	plate	D6R402	Bacillus_phage	35.7	1.1e-79
WP_014418185.1|2195940_2198505_-	peptidase G2	NA	D6R401	Bacillus_phage	79.8	0.0e+00
WP_014418186.1|2198558_2200262_-|tail	phage tail protein	tail	D6R400	Bacillus_phage	57.6	2.3e-180
WP_014418187.1|2200276_2201116_-|tail	phage tail family protein	tail	D6R3Z9	Bacillus_phage	58.3	1.2e-92
WP_014418188.1|2201109_2205597_-|tail	phage tail tape measure protein	tail	A0A1Q1PVX7	Staphylococcus_phage	32.4	7.9e-63
2205179:2205197	attL	TTTTTAAAAACAGAAAAAA	NA	NA	NA	NA
WP_014418189.1|2205794_2206172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014418190.1|2206237_2206846_-|tail	tail protein	tail	A0A2H4J8F3	uncultured_Caudovirales_phage	35.5	3.7e-24
WP_014418191.1|2206860_2207244_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_014418192.1|2207240_2207639_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_014418193.1|2207635_2207953_-|head	phage head closure protein	head	A0A2H4JCB1	uncultured_Caudovirales_phage	38.2	3.4e-13
WP_014418194.1|2207942_2208245_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0S2GLH6	Bacillus_phage	45.2	3.6e-12
WP_014418195.1|2208262_2208742_-	collagen-like protein	NA	D6R3Z0	Bacillus_phage	60.8	1.6e-09
WP_014418196.1|2208764_2210057_-|capsid	phage major capsid protein	capsid	A0A0A7RTL2	Clostridium_phage	48.7	1.8e-92
WP_014418197.1|2210095_2210722_-|head,protease	HK97 family phage prohead protease	head,protease	Q9ZXF7	Bacillus_phage	77.7	2.5e-84
WP_014418198.1|2210684_2211965_-|portal	phage portal protein	portal	D6R3Y6	Bacillus_phage	62.8	2.1e-154
WP_014418199.1|2211969_2212140_-	hypothetical protein	NA	Q9ZXF9	Bacillus_phage	61.8	7.9e-09
WP_014418200.1|2212153_2213863_-|terminase	terminase large subunit	terminase	A0A0S2GLF0	Bacillus_phage	63.0	6.4e-207
WP_014418201.1|2213859_2214375_-|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	42.3	7.0e-32
WP_032863623.1|2214600_2214966_-	HNH endonuclease	NA	A0A1U7Q1S7	Geobacillus_virus	54.2	2.3e-29
WP_032863621.1|2215272_2215992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032863619.1|2216014_2216827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032863616.1|2217016_2217229_-	helix-turn-helix domain-containing protein	NA	A0A1Z1LZP5	Bacillus_phage	43.9	3.8e-08
WP_169800257.1|2217481_2217631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032863614.1|2217769_2217982_-	helix-turn-helix domain-containing protein	NA	A0A1Z1LZP5	Bacillus_phage	52.9	1.6e-11
WP_014304494.1|2218280_2218418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032863612.1|2218522_2219038_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1L2JY33	Aeribacillus_phage	43.2	1.6e-28
WP_025852602.1|2219057_2219243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025852606.1|2219490_2220156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025852608.1|2220318_2220576_-	hypothetical protein	NA	A0A2H4JA61	uncultured_Caudovirales_phage	40.5	2.5e-06
WP_025852610.1|2220611_2220815_-	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	70.3	2.8e-21
WP_162918043.1|2220912_2221077_-	hypothetical protein	NA	A0A2H4J4N7	uncultured_Caudovirales_phage	66.0	6.7e-13
WP_040221743.1|2221127_2221556_-	RusA family crossover junction endodeoxyribonuclease	NA	S6B1L9	Thermus_phage	65.7	1.7e-44
WP_141233183.1|2221791_2222739_-	ATP-binding protein	NA	A6XMI1	Bacillus_virus	50.2	1.9e-54
WP_032859408.1|2222623_2223325_-	DnaD domain protein	NA	NA	NA	NA	NA
WP_082029678.1|2223522_2224260_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	A0A2P1JU03	Anoxybacillus_phage	42.4	4.8e-42
WP_025852621.1|2224279_2225200_-	hypothetical protein	NA	A0A0A7S0A9	Clostridium_phage	64.0	4.5e-90
WP_032859263.1|2225196_2225385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014721404.1|2225486_2225684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014418217.1|2225680_2225938_-	hypothetical protein	NA	A0A2H4J4M9	uncultured_Caudovirales_phage	39.8	1.1e-09
WP_014418218.1|2225934_2226507_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J884	uncultured_Caudovirales_phage	56.9	4.7e-61
WP_014418219.1|2226564_2227293_-	Rha family transcriptional regulator	NA	A0A2H4J4N4	uncultured_Caudovirales_phage	68.7	6.1e-90
WP_032863594.1|2227289_2227604_-	hypothetical protein	NA	A0A2H4JDL0	uncultured_Caudovirales_phage	49.3	1.9e-11
WP_025852635.1|2227616_2227835_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014418220.1|2227988_2228366_+	helix-turn-helix domain-containing protein	NA	A0A0A7RTK4	Clostridium_phage	45.3	1.1e-10
WP_014418221.1|2228737_2229934_+|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	43.9	2.5e-80
WP_014418222.1|2229977_2231282_-	purine permease	NA	NA	NA	NA	NA
WP_014418223.1|2231278_2231863_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_014418224.1|2232195_2233698_-	carboxypeptidase M32	NA	NA	NA	NA	NA
WP_014721409.1|2233809_2235729_-	ATP-dependent DNA helicase	NA	A0A2P1N0K5	Streptomyces_phage	21.8	1.8e-11
WP_014418226.1|2235832_2236024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003153548.1|2236190_2236343_+	YpzG family protein	NA	NA	NA	NA	NA
WP_014418227.1|2236383_2237550_-	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_003153541.1|2238083_2238383_-	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_014418228.1|2238462_2239011_-	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_003153539.1|2239099_2239336_-|coat	spore coat protein	coat	NA	NA	NA	NA
2244921:2244939	attR	TTTTTAAAAACAGAAAAAA	NA	NA	NA	NA
>prophage 7
NZ_CP041691	Bacillus amyloliquefaciens strain ZJU1 chromosome, complete genome	4064151	2330918	2337171	4064151		Staphylococcus_phage(66.67%)	9	NA	NA
WP_007409428.1|2330918_2331512_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.6	2.6e-14
WP_014418279.1|2331501_2332257_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.7	1.7e-10
WP_003153376.1|2332464_2332554_+	YjcZ family sporulation protein	NA	NA	NA	NA	NA
WP_014418280.1|2332641_2333163_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_003153373.1|2333228_2333603_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA	NA
WP_003153372.1|2333719_2334184_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	59.3	1.2e-43
WP_014418281.1|2334216_2335413_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	54.7	2.1e-116
WP_007409425.1|2335427_2336075_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	44.3	1.5e-39
WP_014418282.1|2336055_2337171_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	36.6	4.4e-55
>prophage 8
NZ_CP041691	Bacillus amyloliquefaciens strain ZJU1 chromosome, complete genome	4064151	2696432	2756324	4064151	protease,coat,tRNA	uncultured_Mediterranean_phage(25.0%)	59	NA	NA
WP_007408194.1|2696432_2696876_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_003152716.1|2696888_2699093_-	GTP diphosphokinase	NA	A0A2I2L310	Orpheovirus	34.8	1.5e-09
WP_003152714.1|2699250_2699763_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.2	5.5e-29
WP_014418527.1|2699768_2702129_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	34.8	8.1e-91
WP_014418528.1|2702184_2702511_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_014418529.1|2702574_2703072_-	cation:proton antiporter regulatory subunit	NA	NA	NA	NA	NA
WP_014418530.1|2703203_2705423_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	32.5	1.2e-27
WP_014418531.1|2705459_2705756_-	post-transcriptional regulator	NA	NA	NA	NA	NA
WP_014418532.1|2705871_2707428_+	stage V sporulation protein B	NA	NA	NA	NA	NA
WP_014418533.1|2707435_2708092_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_003152697.1|2708259_2708646_+	TIGR04086 family membrane protein	NA	NA	NA	NA	NA
WP_007408187.1|2708697_2708958_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	46.9	1.9e-06
WP_014305500.1|2708988_2710134_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.8	8.1e-89
WP_003152692.1|2710161_2711190_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003152687.1|2711215_2711416_-	DUF2905 domain-containing protein	NA	NA	NA	NA	NA
WP_003152685.1|2711408_2712413_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	30.0	4.0e-07
WP_003152683.1|2712423_2713029_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_014418534.1|2713163_2713673_-	BofC C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_014721606.1|2714055_2714649_-	YhcN/YlaJ family sporulation lipoprotein	NA	NA	NA	NA	NA
WP_014418537.1|2714796_2715987_-|coat	SafA/ExsA family spore coat assembly protein	coat	NA	NA	NA	NA
WP_014418538.1|2716113_2717217_-	quinolinate synthase NadA	NA	NA	NA	NA	NA
WP_014721607.1|2717218_2718067_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA	NA
WP_014418540.1|2718048_2719614_-	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_007408177.1|2719720_2720872_+	IscS subfamily cysteine desulfurase	NA	A0A141ZJV0	Faustovirus	29.9	4.6e-31
WP_014418541.1|2720868_2721411_+	transcription repressor NadR	NA	NA	NA	NA	NA
WP_014418542.1|2721436_2722294_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_007408173.1|2722307_2722751_-	transcriptional regulator ThrR	NA	NA	NA	NA	NA
WP_007408172.1|2722804_2724091_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_014418543.1|2724122_2724701_-	Spo0B domain-containing protein	NA	NA	NA	NA	NA
WP_003152662.1|2725018_2725303_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_012118103.1|2725315_2725657_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_003152660.1|2725659_2725968_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_014418544.1|2726113_2726980_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_014418545.1|2726972_2727776_-	M23 family metallopeptidase	NA	NA	NA	NA	NA
WP_003152655.1|2727903_2728707_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003152653.1|2728709_2729390_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_007408167.1|2729443_2729962_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_007408166.1|2729958_2730822_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003152647.1|2730852_2731866_-	rod shape-determining protein MreB	NA	NA	NA	NA	NA
WP_007408165.1|2731957_2732653_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_012118105.1|2732684_2733254_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_014418547.1|2733394_2734396_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_014418548.1|2734522_2735275_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_014418549.1|2735414_2736707_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_014418550.1|2736765_2739408_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.3	2.8e-161
WP_003152639.1|2739860_2740052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014418551.1|2740066_2741089_-|coat	spore coat protein YsxE	coat	NA	NA	NA	NA
WP_032863550.1|2741122_2743048_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014418553.1|2743180_2744470_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_015240312.1|2744498_2745473_-	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_014418554.1|2745478_2746258_-	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
WP_012118114.1|2746247_2747189_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_007408154.1|2747223_2748054_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_003152628.1|2748061_2749429_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_014418555.1|2749622_2750114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003152626.1|2750146_2750734_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_014418556.1|2750730_2753055_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	44.2	1.0e-183
WP_014418557.1|2753253_2754912_-|protease	ATP-dependent protease LonB	protease	A0A167RA83	Powai_lake_megavirus	32.7	1.9e-14
WP_007408149.1|2755061_2756324_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	65.3	4.2e-147
>prophage 9
NZ_CP041691	Bacillus amyloliquefaciens strain ZJU1 chromosome, complete genome	4064151	3740256	3748034	4064151		Bacillus_phage(33.33%)	9	NA	NA
WP_014419157.1|3740256_3741192_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	28.9	9.8e-24
WP_014419158.1|3741193_3741892_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.8	3.2e-35
WP_014419159.1|3742083_3742950_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_014419160.1|3742970_3743675_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_025649399.1|3743740_3744667_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	45.9	1.1e-43
WP_003150986.1|3745025_3745481_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	NA	NA	NA	NA
WP_014419162.1|3745477_3746326_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.3	5.4e-37
WP_014419163.1|3746346_3747294_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	42.6	1.3e-68
WP_014419164.1|3747296_3748034_-	NTP transferase domain-containing protein	NA	G3MA50	Bacillus_virus	42.7	5.0e-47
