assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007197595.1_ASM719759v1	NZ_CP041620	Shigella flexneri strain C32 chromosome, complete genome	1	332115-332238	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	NA,NA|30aa|down_7|NZ_CP041620.1_341135_341225_+	NA|471aa|up_9|NZ_CP041620.1_321567_322980_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP041620.1_323536_323746_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP041620.1_324201_324828_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP041620.1_324848_326951_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP041620.1_326963_327602_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP041620.1_327665_328334_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP041620.1_328330_329116_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP041620.1_329119_329932_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP041620.1_329943_331548_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP041620.1_331673_331979_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP041620.1_332553_333810_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP041620.1_333850_335224_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP041620.1_335438_336080_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP041620.1_336119_337268_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP041620.1_337558_338770_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP041620.1_338882_339815_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP041620.1_339811_340837_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP041620.1_341135_341225_+	NA	NA|390aa|down_8|NZ_CP041620.1_341390_342560_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP041620.1_342705_343287_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_007197595.1_ASM719759v1	NZ_CP041620	Shigella flexneri strain C32 chromosome, complete genome	2	1161225-1161375	2,1	CRISPRCasFinder,PILER-CR	no		DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACTCA	28,31	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	NA,NA	NA|431aa|up_9|NZ_CP041620.1_1146346_1147639_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP041620.1_1147729_1149073_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP041620.1_1149083_1149695_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_CP041620.1_1149853_1153843_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP041620.1_1153977_1154472_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP041620.1_1155015_1155981_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP041620.1_1156103_1157870_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP041620.1_1157870_1159592_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP041620.1_1159633_1160338_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP041620.1_1160622_1160841_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP041620.1_1161584_1163861_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP041620.1_1163891_1164212_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP041620.1_1164534_1164759_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP041620.1_1164831_1166778_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP041620.1_1166774_1167890_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|553aa|down_5|NZ_CP041620.1_1168992_1170651_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_6|NZ_CP041620.1_1171076_1171772_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_7|NZ_CP041620.1_1172092_1172992_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|NZ_CP041620.1_1173135_1174788_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|NZ_CP041620.1_1174799_1175768_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
GCF_007197595.1_ASM719759v1	NZ_CP041620	Shigella flexneri strain C32 chromosome, complete genome	3	2048766-2048898	2	PILER-CR	no		DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	NA,NA	NA|105aa|up_9|NZ_CP041620.1_2040137_2040452_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP041620.1_2040454_2040688_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP041620.1_2040773_2041253_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP041620.1_2041444_2043307_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP041620.1_2043299_2043830_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP041620.1_2043937_2045269_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP041620.1_2045327_2045615_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP041620.1_2045611_2046898_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP041620.1_2046948_2047890_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP041620.1_2047904_2048675_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP041620.1_2049147_2050662_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP041620.1_2050692_2051835_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP041620.1_2051952_2053170_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP041620.1_2053242_2054796_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP041620.1_2054904_2055690_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP041620.1_2055695_2056286_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP041620.1_2056404_2056800_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP041620.1_2057060_2060279_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP041620.1_2060296_2061445_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP041620.1_2061900_2062722_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_007197595.1_ASM719759v1	NZ_CP041620	Shigella flexneri strain C32 chromosome, complete genome	4	2268727-2268876	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	NA,NA|597aa|down_6|NZ_CP041620.1_2275973_2277764_-	NA|340aa|up_9|NZ_CP041620.1_2256917_2257937_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP041620.1_2257940_2258504_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP041620.1_2258720_2259752_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP041620.1_2259775_2260540_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP041620.1_2260604_2261924_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP041620.1_2261990_2262989_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP041620.1_2263066_2264569_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP041620.1_2264729_2265812_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP041620.1_2265811_2266912_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP041620.1_2267178_2268690_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP041620.1_2269043_2269487_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP041620.1_2269486_2272342_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP041620.1_2272397_2273594_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP041620.1_2273786_2274290_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP041620.1_2274335_2274752_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP041620.1_2274913_2275918_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|597aa|down_6|NZ_CP041620.1_2275973_2277764_-	NA	NA|151aa|down_7|NZ_CP041620.1_2277886_2278339_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP041620.1_2278483_2279077_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP041620.1_2279147_2279861_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_007197595.1_ASM719759v1	NZ_CP041620	Shigella flexneri strain C32 chromosome, complete genome	5	4636531-4636648	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas14j,RT,WYL,csa3	NA,NA	NA|74aa|up_9|NZ_CP041620.1_4625768_4625990_-	PRK09956, PRK09956, ISNCY family transposase	NA|304aa|up_8|NZ_CP041620.1_4626002_4626914_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP041620.1_4627106_4628297_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP041620.1_4628293_4629553_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP041620.1_4629542_4631171_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP041620.1_4631443_4632802_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP041620.1_4632806_4633883_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP041620.1_4634345_4634996_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP041620.1_4635049_4635304_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP041620.1_4635303_4636434_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP041620.1_4636667_4638953_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP041620.1_4639648_4643401_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP041620.1_4643528_4644251_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP041620.1_4644397_4647025_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP041620.1_4647173_4648862_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP041620.1_4648858_4649482_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1505aa|down_6|NZ_CP041620.1_4649505_4654020_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP041620.1_4654020_4655670_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP041620.1_4655674_4656451_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP041620.1_4656524_4657709_-	PRK05790, PRK05790, putative acyltransferase; Provisional
